Rroxscaffold_2G00137360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001171
Physical Location & Seq
Forward (+)
75094694 .. 75095021
328 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00137360.1

Sequence Viewer

Length: 171 bp
ATGCATCTGAGGCACCAATCAGACCTACATTTGACAAGCTGTGGGGTGGCCATGACAGATCAAAGAAGGAGGATTGGGCAAGTACTCATGCATCCAATATTTGATTGGGAGCCCAGCCCAGGTCTCAGTTCCCTATTCCTTTTTGCTGATACGAATTTGCCTGTATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

56

Amino Acids

6.38

Weight (kDa)

6.37

Isoelectric Point (pI)

89.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 48
AcsI RAATTY 1 cut(s) 154
AfaI GTAC 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 119
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 1 cut(s) 39
AluI AGCT 1 cut(s) 39
Alw26I GTCTC 1 cut(s) 128
AoxI GGCC 1 cut(s) 48
ApoI RAATTY 1 cut(s) 154
BalI TGGCCA 1 cut(s) 50
BanI GGYRCC 1 cut(s) 12
BanII GRGCYC 1 cut(s) 114
BciT130I CCWGG 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 128
BmcAI AGTACT 1 cut(s) 84
Bme1390I CCNGG 1 cut(s) 120
BmiI GGNNCC 2 cut(s) 14, 111
BmrFI CCNGG 1 cut(s) 120
BmsI GCATC 2 cut(s) 13, 100
BsaI GGTCTC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 118
Bsc4I CCNNNNNNNGG 1 cut(s) 119
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMII CTCAG 1 cut(s) 139
BseYI CCCAGC 1 cut(s) 113
BshFI GGCC 1 cut(s) 50
BshNI GGYRCC 1 cut(s) 12
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 128
BsnI GGCC 1 cut(s) 50
Bso31I GGTCTC 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 1 cut(s) 58
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 1 cut(s) 138
BspLI GGNNCC 2 cut(s) 14, 111
BspT107I GGYRCC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 1 cut(s) 58
Bst2UI CCWGG 1 cut(s) 120
BstDEI CTNAG 2 cut(s) 8, 125
BstF5I GGATG 1 cut(s) 91
BstKTI GATC 1 cut(s) 61
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 1 cut(s) 58
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 118
BsuRI GGCC 1 cut(s) 50
BtsCI GGATG 1 cut(s) 91
Csp6I GTAC 1 cut(s) 83
CviAII CATG 2 cut(s) 52, 88
CviJI RGCY 4 cut(s) 39, 50, 112, 117
CviKI_1 RGCY 4 cut(s) 39, 50, 112, 117
CviQI GTAC 1 cut(s) 83
DdeI CTNAG 2 cut(s) 8, 125
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
EaeI YGGCCR 1 cut(s) 48
Eco24I GRGCYC 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 118
EcoT22I ATGCAT 2 cut(s) 6, 93
EcoT38I GRGCYC 1 cut(s) 114
FaeI CATG 2 cut(s) 55, 91
FaiI YATR 3 cut(s) 53, 89, 166
FatI CATG 2 cut(s) 51, 87
FokI GGATG 1 cut(s) 78
FriOI GRGCYC 1 cut(s) 114
GsaI CCCAGC 1 cut(s) 117
HaeIII GGCC 1 cut(s) 50
Hin1II CATG 2 cut(s) 55, 91
Hpy188I TCNGA 2 cut(s) 9, 22
HpyAV CCTTC 1 cut(s) 60
HpyCH4V TGCA 2 cut(s) 4, 91
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 2 cut(s) 8, 125
Hsp92II CATG 2 cut(s) 55, 91
Kzo9I GATC 1 cut(s) 58
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 3 cut(s) 105, 127, 132
LweI GCATC 2 cut(s) 13, 100
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MhlI GDGCHC 1 cut(s) 114
MlsI TGGCCA 1 cut(s) 50
MluCI AATT 1 cut(s) 154
MluNI TGGCCA 1 cut(s) 50
MnlI CCTC 2 cut(s) 3, 63
Mox20I TGGCCA 1 cut(s) 50
Mph1103I ATGCAT 2 cut(s) 6, 93
MscI TGGCCA 1 cut(s) 50
Msp20I TGGCCA 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 1 cut(s) 58
NlaIII CATG 2 cut(s) 55, 91
NlaIV GGNNCC 2 cut(s) 14, 111
NsiI ATGCAT 2 cut(s) 6, 93
Psp6I CCWGG 1 cut(s) 118
PspFI CCCAGC 1 cut(s) 113
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 2 cut(s) 14, 111
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
Sau3AI GATC 1 cut(s) 58
ScaI AGTACT 1 cut(s) 84
ScrFI CCNGG 1 cut(s) 120
SduI GDGCHC 1 cut(s) 114
SetI ASST 3 cut(s) 27, 41, 124
SfaNI GCATC 2 cut(s) 13, 100
SgeI CNNG 7 cut(s) 48, 64, 92, 100, 126, 131, 132
Sse9I AATT 1 cut(s) 154
SspI AATATT 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 118
TasI AATT 1 cut(s) 154
TatI WGTACW 1 cut(s) 82
XapI RAATTY 1 cut(s) 154
XcmI CCANNNNNNNNNTGG 1 cut(s) 102
ZrmI AGTACT 1 cut(s) 84
Zsp2I ATGCAT 2 cut(s) 6, 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.