Rh5AG179400

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
20209741 .. 20212895
3155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG179400.1

Sequence Viewer

Length: 1224 bp
ATGTTGTTCGAGACGAGAGCGTGGCTGGTCTTCTTCGTGGCAGTGATCATCTCCCTGCGAATCTCCTTCAACATTCCGAGAACCGGCGAATCCAACAGGAAGCCCTCTCTCTCTTCCTCCGACGAACCACTACTCGTCTCTTTCGTTTCTCTCGCTTCTGGCGACGGCGGCCTAGACGACTTCTTCTCCGAGACGACGGCGACGGACTTGACGTCACAGACTCTCGAGTACGACTTCTACCGGAACACGTGTCCTCAGGCCGAGGGGCTCGTGAGGTCGAAGATGGCTTGGATTTACGGCCAGCACAGGAACGCCTCGGCTCAGTTGCTTCGTCTCTTTTTCCATGACTGCTTCATTGAGGGGTGTGATGCTTCCGTGCTCTTGGATGACAGCAATGGGAATACAAACCATGCCATAGAGAAGCAGGCTATACCCAATAAGTCCTTGAAGGGCTTTGATAAAATTGATCAGATCAAGGAGATGCTTGAAAATGAATGTCCGGGGGTGGTATCTTGTGCCGACATACTTACTCTCGCCACCAGAGATGCCATTGTTCTGGCTGGTGGCCCCTTCTATCCAATTTTGACTGGAAGAAGAGACAGTACCCGCTCATTCTTTAATGAGGCAATGATGGGGATTCCAAGGCCAGATGACAACATCAATCAGACATTGCATCAGTTCTCGCTGAGAGGTTTTGATGAGAGAGAAACAGTTGCTCTTCTAGGAGGGCACAACATTGGAAAGATAGGATGTGAGTTCATTATGTCACGCATCAACAACTTCAAGGGCACAGGGCAGCCAGACCCAACTATTCCTCCTGAATTTCTCAGGGAGATGAAACTGAATTGCGAAGATGATAATAATGAGTCAACTAGTATTGCTGCTGCTGCATCTCCTTTGGTATCAAGGGGTCTGAGTGAGAGGTTTACCACAGATGGGATGTCATACTATCAACAACTGTCTTCATCGGTATCATCAGGGGCTGGTTTTGACAGTCACTATTACCAGAGCTTGTTGAGGGGAAGAGGACTCCTCTTTGCTGATCAGCAATTAATGGCTAATAAAAGGACTGCTCGATTGGTCGCAGCATATGCTTCAGATGATGGATCAGCCTTTCAAATGGACTTTGCCCGGGCAATGATGAAGATGTCAGATCTTAATGTTCTCACTGGATCCCAAGGTCAAGTCCGTTTTGACTGTTCTCTCCCCACCCACAGTTCCTAA

Protein Analysis

407

Amino Acids

44.94

Weight (kDa)

5.12

Isoelectric Point (pI)

47.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 91 - 367 3.4e-71 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 215
AccBSI CCGCTC 1 cut(s) 609
AciI CCGC 2 cut(s) 168, 607
AclWI GGATC 3 cut(s) 1114, 1167, 1180
AcoI YGGCCR 1 cut(s) 298
AcsI RAATTY 1 cut(s) 821
AcuI CTGAAG 1 cut(s) 1080
AcvI CACGTG 1 cut(s) 249
AcyI GRCGYC 1 cut(s) 212
AfaI GTAC 2 cut(s) 230, 604
AfiI CCNNNNNNNGG 2 cut(s) 83, 936
AflIII ACRYGT 2 cut(s) 246, 248
AgsI TTSAA 5 cut(s) 70, 448, 488, 784, 1118
AhdI GACNNNNNGTC 1 cut(s) 211
AhlI ACTAGT 1 cut(s) 872
AluBI AGCT 1 cut(s) 1011
AluI AGCT 1 cut(s) 1011
Alw21I GWGCWC 1 cut(s) 381
Alw26I GTCTC 5 cut(s) 5, 142, 185, 338, 591
AlwI GGATC 3 cut(s) 1114, 1167, 1180
AlwNI CAGNNNCTG 1 cut(s) 983
Ama87I CYCGRG 2 cut(s) 224, 1131
AoxI GGCC 5 cut(s) 169, 258, 298, 565, 644
ApeKI GCWGC 5 cut(s) 796, 881, 884, 887, 1085
ApoI RAATTY 1 cut(s) 821
AseI ATTAAT 1 cut(s) 1052
AspS9I GGNCC 1 cut(s) 566
AsuC2I CCSGG 3 cut(s) 501, 1132, 1133
AvaI CYCGRG 2 cut(s) 224, 1131
AxyI CCTNAGG 1 cut(s) 255
BaeGI GKGCMC 2 cut(s) 732, 791
BamHI GGATCC 1 cut(s) 1172
BanII GRGCYC 1 cut(s) 270
BarI GAAGNNNNNNTAC 2 cut(s) 586, 618
BauI CACGAG 1 cut(s) 269
BbrPI CACGTG 1 cut(s) 249
BbsI GAAGAC 2 cut(s) 22, 954
Bbv12I GWGCWC 1 cut(s) 381
BbvI GCAGC 5 cut(s) 808, 868, 871, 874, 1097
BccI CCATC 4 cut(s) 277, 625, 929, 1097
BceAI ACGGC 3 cut(s) 181, 213, 313
BclI TGATCA 3 cut(s) 45, 466, 1042
BcnI CCSGG 3 cut(s) 501, 1132, 1133
BcoDI GTCTC 5 cut(s) 5, 142, 185, 338, 591
BcuI ACTAGT 1 cut(s) 872
BfaI CTAG 3 cut(s) 173, 722, 873
BglII AGATCT 1 cut(s) 1153
BisI GCNGC 6 cut(s) 169, 797, 882, 885, 888, 1086
BlsI GCNGC 6 cut(s) 170, 798, 883, 886, 889, 1087
Bme1390I CCNGG 3 cut(s) 501, 1132, 1133
BmeRI GACNNNNNGTC 1 cut(s) 211
BmeT110I CYCGRG 2 cut(s) 224, 1131
BmgT120I GGNCC 1 cut(s) 566
BmiI GGNNCC 2 cut(s) 568, 1174
BmrFI CCNGG 3 cut(s) 501, 1132, 1133
BmsI GCATC 6 cut(s) 358, 471, 535, 682, 780, 899
BpiI GAAGAC 2 cut(s) 22, 954
BplI GAGNNNNNCTC 2 cut(s) 1017, 1049
BpuMI CCSGG 3 cut(s) 501, 1132, 1133
BsaAI YACGTR 1 cut(s) 249
BsaHI GRCGYC 1 cut(s) 212
BsaJI CCNNGG 6 cut(s) 261, 315, 500, 641, 1131, 1177
BsaWI WCCGGW 1 cut(s) 240
BsaXI ACNNNNNCTCC 4 cut(s) 170, 200, 799, 829
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 936
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 2 cut(s) 592, 1174
Bse21I CCTNAGG 1 cut(s) 255
Bse3DI GCAATG 4 cut(s) 400, 633, 668, 1143
BseDI CCNNGG 6 cut(s) 261, 315, 500, 641, 1131, 1177
BseGI GGATG 3 cut(s) 391, 755, 945
BseLI CCNNNNNNNGG 2 cut(s) 83, 936
BseMI GCAATG 4 cut(s) 400, 633, 668, 1143
BseMII CTCAG 5 cut(s) 269, 335, 677, 841, 905
BseNI ACTGG 2 cut(s) 592, 1174
BseRI GAGGAG 1 cut(s) 1022
BseSI GKGCMC 2 cut(s) 732, 791
BseXI GCAGC 5 cut(s) 808, 868, 871, 874, 1097
BshFI GGCC 5 cut(s) 171, 260, 300, 567, 646
BsiHKAI GWGCWC 1 cut(s) 381
BsiHKCI CYCGRG 2 cut(s) 224, 1131
BsiSI CCGG 4 cut(s) 84, 241, 500, 1132
BslI CCNNNNNNNGG 2 cut(s) 83, 936
BsmAI GTCTC 5 cut(s) 5, 142, 185, 338, 591
BsmBI CGTCTC 4 cut(s) 5, 142, 185, 338
BsnI GGCC 5 cut(s) 171, 260, 300, 567, 646
BsoBI CYCGRG 2 cut(s) 224, 1131
Bsp1286I GDGCHC 4 cut(s) 270, 381, 732, 791
Bsp143I GATC 7 cut(s) 45, 466, 471, 1042, 1106, 1153, 1172
BspACI CCGC 2 cut(s) 168, 607
BspANI GGCC 5 cut(s) 171, 260, 300, 567, 646
BspCNI CTCAG 5 cut(s) 268, 334, 678, 840, 906
BspLI GGNNCC 2 cut(s) 568, 1174
BspPI GGATC 3 cut(s) 1114, 1167, 1180
BspQI GCTCTTC 1 cut(s) 723
BsrBI CCGCTC 1 cut(s) 609
BsrDI GCAATG 4 cut(s) 400, 633, 668, 1143
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 2 cut(s) 592, 1174
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 6 cut(s) 261, 315, 500, 641, 1131, 1177
BssMI GATC 7 cut(s) 45, 466, 471, 1042, 1106, 1153, 1172
BssNI GRCGYC 1 cut(s) 212
BssSI CACGAG 1 cut(s) 269
BssT1I CCWWGG 2 cut(s) 641, 1177
Bst2BI CACGAG 1 cut(s) 269
Bst4CI ACNGT 6 cut(s) 602, 712, 960, 995, 1199, 1217
Bst6I CTCTTC 4 cut(s) 118, 589, 723, 1018
BstACI GRCGYC 1 cut(s) 212
BstAPI GCANNNNNTGC 1 cut(s) 1091
BstBAI YACGTR 1 cut(s) 249
BstC8I GCNNGC 2 cut(s) 302, 426
BstDEI CTNAG 5 cut(s) 255, 321, 686, 827, 914
BstF5I GGATG 3 cut(s) 391, 755, 945
BstKTI GATC 7 cut(s) 48, 469, 474, 1045, 1109, 1156, 1175
BstMAI GTCTC 5 cut(s) 5, 142, 185, 338, 591
BstMBI GATC 7 cut(s) 45, 466, 471, 1042, 1106, 1153, 1172
BstMWI GCNNNNNNNGC 3 cut(s) 168, 887, 1091
BstSCI CCNGG 3 cut(s) 499, 1130, 1131
BstSLI GKGCMC 2 cut(s) 732, 791
BstV1I GCAGC 5 cut(s) 808, 868, 871, 874, 1097
BstV2I GAAGAC 2 cut(s) 22, 954
BstX2I RGATCY 2 cut(s) 1153, 1172
BstXI CCANNNNNNTGG 1 cut(s) 556
BstYI RGATCY 2 cut(s) 1153, 1172
Bsu36I CCTNAGG 1 cut(s) 255
BsuRI GGCC 5 cut(s) 171, 260, 300, 567, 646
BtsCI GGATG 3 cut(s) 391, 755, 945
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 2 cut(s) 48, 1167
Cac8I GCNNGC 2 cut(s) 302, 426
CaiI CAGNNNCTG 1 cut(s) 983
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 566
Cfr9I CCCGGG 1 cut(s) 1131
Csp6I GTAC 2 cut(s) 229, 603
CviAII CATG 2 cut(s) 344, 410
CviQI GTAC 2 cut(s) 229, 603
DdeI CTNAG 5 cut(s) 255, 321, 686, 827, 914
DpnI GATC 7 cut(s) 47, 468, 473, 1044, 1108, 1155, 1174
DpnII GATC 7 cut(s) 45, 466, 471, 1042, 1106, 1153, 1172
DriI GACNNNNNGTC 1 cut(s) 211
EaeI YGGCCR 1 cut(s) 298
Eam1104I CTCTTC 4 cut(s) 118, 589, 723, 1018
Eam1105I GACNNNNNGTC 1 cut(s) 211
EarI CTCTTC 4 cut(s) 118, 589, 723, 1018
Eco130I CCWWGG 2 cut(s) 641, 1177
Eco24I GRGCYC 1 cut(s) 270
Eco57I CTGAAG 1 cut(s) 1080
Eco72I CACGTG 1 cut(s) 249
Eco81I CCTNAGG 1 cut(s) 255
Eco88I CYCGRG 2 cut(s) 224, 1131
EcoT14I CCWWGG 2 cut(s) 641, 1177
EcoT38I GRGCYC 1 cut(s) 270
ErhI CCWWGG 2 cut(s) 641, 1177
Esp3I CGTCTC 4 cut(s) 5, 142, 185, 338
FaeI CATG 2 cut(s) 347, 413
FaiI YATR 9 cut(s) 345, 411, 416, 431, 524, 764, 946, 1090, 1092
FatI CATG 2 cut(s) 343, 409
FauI CCCGC 1 cut(s) 614
FauNDI CATATG 1 cut(s) 1090
FbaI TGATCA 3 cut(s) 45, 466, 1042
Fnu4HI GCNGC 6 cut(s) 169, 797, 882, 885, 888, 1086
FokI GGATG 3 cut(s) 398, 762, 952
FriOI GRGCYC 1 cut(s) 270
Fsp4HI GCNGC 6 cut(s) 169, 797, 882, 885, 888, 1086
FspBI CTAG 3 cut(s) 173, 722, 873
GluI GCNGC 6 cut(s) 169, 797, 882, 885, 888, 1086
HaeIII GGCC 5 cut(s) 171, 260, 300, 567, 646
HapII CCGG 4 cut(s) 84, 241, 500, 1132
Hin1I GRCGYC 1 cut(s) 212
Hin1II CATG 2 cut(s) 347, 413
HincII GTYRAC 1 cut(s) 870
HindII GTYRAC 1 cut(s) 870
HinfI GANTC 6 cut(s) 60, 89, 220, 637, 866, 1029
HpaII CCGG 4 cut(s) 84, 241, 500, 1132
Hpy166II GTNNAC 2 cut(s) 870, 927
Hpy188I TCNGA 8 cut(s) 78, 121, 190, 471, 666, 915, 1099, 1153
Hpy188III TCNNGA 4 cut(s) 10, 224, 271, 818
Hpy8I GTNNAC 2 cut(s) 870, 927
Hpy99I CGWCG 4 cut(s) 125, 167, 199, 205
HpyAV CCTTC 3 cut(s) 76, 442, 580
HpyCH4III ACNGT 6 cut(s) 602, 712, 960, 995, 1199, 1217
HpyCH4IV ACGT 2 cut(s) 212, 248
HpyCH4V TGCA 2 cut(s) 673, 890
HpyF10VI GCNNNNNNNGC 3 cut(s) 168, 887, 1091
HpyF3I CTNAG 5 cut(s) 255, 321, 686, 827, 914
HpySE526I ACGT 2 cut(s) 212, 248
Hsp92I GRCGYC 1 cut(s) 212
Hsp92II CATG 2 cut(s) 347, 413
Ksp22I TGATCA 3 cut(s) 45, 466, 1042
Kzo9I GATC 7 cut(s) 45, 466, 471, 1042, 1106, 1153, 1172
LguI GCTCTTC 1 cut(s) 723
Lsp1109I GCAGC 5 cut(s) 808, 868, 871, 874, 1097
LweI GCATC 6 cut(s) 358, 471, 535, 682, 780, 899
MaeI CTAG 3 cut(s) 173, 722, 873
MaeII ACGT 2 cut(s) 212, 248
MaeIII GTNAC 3 cut(s) 213, 765, 995
MalI GATC 7 cut(s) 47, 468, 473, 1044, 1108, 1155, 1174
MbiI CCGCTC 1 cut(s) 609
MboI GATC 7 cut(s) 45, 466, 471, 1042, 1106, 1153, 1172
MflI RGATCY 2 cut(s) 1153, 1172
MhlI GDGCHC 4 cut(s) 270, 381, 732, 791
MluCI AATT 5 cut(s) 462, 579, 821, 844, 1049
MlyI GAGTC 3 cut(s) 214, 875, 1023
MmeI TCCRAC 2 cut(s) 117, 144
MseI TTAA 3 cut(s) 618, 1052, 1158
MspI CCGG 4 cut(s) 84, 241, 500, 1132
MspR9I CCNGG 3 cut(s) 501, 1132, 1133
MwoI GCNNNNNNNGC 3 cut(s) 168, 887, 1091
NciI CCSGG 3 cut(s) 501, 1132, 1133
NdeI CATATG 1 cut(s) 1090
NdeII GATC 7 cut(s) 45, 466, 471, 1042, 1106, 1153, 1172
NlaIII CATG 2 cut(s) 347, 413
NlaIV GGNNCC 2 cut(s) 568, 1174
NmeAIII GCCGAG 2 cut(s) 286, 296
NmuCI GTSAC 3 cut(s) 213, 765, 995
PaeR7I CTCGAG 1 cut(s) 224
PciSI GCTCTTC 1 cut(s) 723
PcsI WCGNNNNNNNCGW 3 cut(s) 141, 159, 209
PfeI GAWTC 3 cut(s) 60, 89, 637
PkrI GCNGC 6 cut(s) 170, 798, 883, 886, 889, 1087
PleI GAGTC 3 cut(s) 214, 874, 1023
PmaCI CACGTG 1 cut(s) 249
PmlI CACGTG 1 cut(s) 249
PpsI GAGTC 3 cut(s) 214, 874, 1023
Ppu21I YACGTR 1 cut(s) 249
PshBI ATTAAT 1 cut(s) 1052
PspCI CACGTG 1 cut(s) 249
PspN4I GGNNCC 2 cut(s) 568, 1174
PspPI GGNCC 1 cut(s) 566
PstNI CAGNNNCTG 1 cut(s) 983
PsuI RGATCY 2 cut(s) 1153, 1172
RsaI GTAC 2 cut(s) 230, 604
RsaNI GTAC 2 cut(s) 229, 603
SapI GCTCTTC 1 cut(s) 723
SaqAI TTAA 3 cut(s) 618, 1052, 1158
SatI GCNGC 6 cut(s) 169, 797, 882, 885, 888, 1086
Sau3AI GATC 7 cut(s) 45, 466, 471, 1042, 1106, 1153, 1172
Sau96I GGNCC 1 cut(s) 566
SchI GAGTC 3 cut(s) 214, 875, 1023
ScrFI CCNGG 3 cut(s) 501, 1132, 1133
SduI GDGCHC 4 cut(s) 270, 381, 732, 791
SetI ASST 7 cut(s) 215, 251, 278, 694, 926, 1013, 1183
SfaNI GCATC 6 cut(s) 358, 471, 535, 682, 780, 899
Sfr274I CTCGAG 1 cut(s) 224
SlaI CTCGAG 1 cut(s) 224
SmaI CCCGGG 1 cut(s) 1133
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
SpeI ACTAGT 1 cut(s) 872
SrfI GCCCGGGC 1 cut(s) 1133
Sse9I AATT 5 cut(s) 462, 579, 821, 844, 1049
SsiI CCGC 2 cut(s) 168, 607
SspMI CTAG 3 cut(s) 173, 722, 873
StyD4I CCNGG 3 cut(s) 499, 1130, 1131
StyI CCWWGG 2 cut(s) 641, 1177
TaaI ACNGT 6 cut(s) 602, 712, 960, 995, 1199, 1217
TaiI ACGT 2 cut(s) 215, 251
TaqI TCGA 4 cut(s) 9, 225, 278, 1075
TasI AATT 5 cut(s) 462, 579, 821, 844, 1049
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 3 cut(s) 60, 89, 637
Tru1I TTAA 3 cut(s) 618, 1052, 1158
Tru9I TTAA 3 cut(s) 618, 1052, 1158
TscAI CASTG 2 cut(s) 48, 1174
TseFI GTSAC 3 cut(s) 213, 765, 995
TseI GCWGC 5 cut(s) 796, 881, 884, 887, 1085
Tsp45I GTSAC 3 cut(s) 213, 765, 995
TspDTI ATGAA 6 cut(s) 343, 507, 748, 851, 954, 1157
TspGWI ACGGA 3 cut(s) 218, 364, 1178
TspMI CCCGGG 1 cut(s) 1131
TspRI CASTG 2 cut(s) 48, 1174
VspI ATTAAT 1 cut(s) 1052
XapI RAATTY 1 cut(s) 821
XhoI CTCGAG 1 cut(s) 224
XmaI CCCGGG 1 cut(s) 1131
XspI CTAG 3 cut(s) 173, 722, 873
ZraI GACGTC 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.