FvH4_3g23771

short-chain dehydrogenase reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001933
Physical Location & Seq
Forward (+)
16845948 .. 16846205
258 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g23771.t1

Sequence Viewer

Length: 258 bp
ATGAGGTCGGCGAGTATCCAGCTCGGCGCGTATGGGATACGAGTTAACTGCGTGTCGCCGGGGCCTGTTGATACACCATTGCTGAACTCGTTGCTTGCCTACAAGGATGTGGAGGACATAACCAAGTTTACGGCGTCAGCTGAGCAAGAGATGATGTCGCCGGAGCATGTGGCTAAAGCAGTCGTGTTCTTGGCTTCTGAGGACTCTCAGTTTGTAACCGGTCACAATCTAGTGGTAGACGGCGGGCGGAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

86

Amino Acids

9.08

Weight (kDa)

5.13

Isoelectric Point (pI)

40.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 1 - 82 3.6e-22 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 237
AccII CGCG 1 cut(s) 29
AciI CCGC 2 cut(s) 243, 247
AcyI GRCGYC 1 cut(s) 134
AgeI ACCGGT 1 cut(s) 218
AluBI AGCT 3 cut(s) 22, 140, 254
AluI AGCT 3 cut(s) 22, 140, 254
AoxI GGCC 1 cut(s) 62
ArsI GACNNNNNNTTYG 2 cut(s) 194, 226
AsiGI ACCGGT 1 cut(s) 218
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 62
AsuC2I CCSGG 1 cut(s) 60
BceAI ACGGC 2 cut(s) 147, 256
BcgI CGANNNNNNTGC 2 cut(s) 30, 64
BciVI GTATCC 2 cut(s) 26, 30
BcnI CCSGG 1 cut(s) 60
BfaI CTAG 1 cut(s) 230
BfuI GTATCC 2 cut(s) 26, 30
BlpI GCTNAGC 1 cut(s) 141
Bme1390I CCNGG 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 1 cut(s) 60
Bpu1102I GCTNAGC 1 cut(s) 141
BpuMI CCSGG 1 cut(s) 60
BsaHI GRCGYC 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 59
BsaWI WCCGGW 1 cut(s) 218
Bse118I RCCGGY 1 cut(s) 218
Bse3DI GCAATG 1 cut(s) 77
BseDI CCNNGG 1 cut(s) 59
BseGI GGATG 1 cut(s) 112
BseMI GCAATG 1 cut(s) 77
BseMII CTCAG 3 cut(s) 132, 189, 221
Bsh1236I CGCG 1 cut(s) 29
BshFI GGCC 1 cut(s) 64
BshTI ACCGGT 1 cut(s) 218
BsiSI CCGG 3 cut(s) 59, 161, 219
BsnI GGCC 1 cut(s) 64
Bsp1720I GCTNAGC 1 cut(s) 141
BspACI CCGC 2 cut(s) 243, 247
BspANI GGCC 1 cut(s) 64
BspCNI CTCAG 3 cut(s) 133, 190, 220
BspFNI CGCG 1 cut(s) 29
BspLI GGNNCC 1 cut(s) 63
BsrDI GCAATG 1 cut(s) 77
BsrFI RCCGGY 1 cut(s) 218
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 1 cut(s) 59
BssNI GRCGYC 1 cut(s) 134
BstACI GRCGYC 1 cut(s) 134
BstC8I GCNNGC 2 cut(s) 96, 245
BstDEI CTNAG 3 cut(s) 141, 198, 207
BstF5I GGATG 1 cut(s) 112
BstFNI CGCG 1 cut(s) 29
BstHHI GCGC 1 cut(s) 29
BstNSI RCATGY 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 58
BstUI CGCG 1 cut(s) 29
BsuI GTATCC 2 cut(s) 26, 30
BsuRI GGCC 1 cut(s) 64
BtsCI GGATG 1 cut(s) 112
Cac8I GCNNGC 2 cut(s) 96, 245
CfoI GCGC 1 cut(s) 29
Cfr10I RCCGGY 1 cut(s) 218
Cfr13I GGNCC 1 cut(s) 62
CseI GACGC 1 cut(s) 123
CspAI ACCGGT 1 cut(s) 218
CviAII CATG 1 cut(s) 167
CviJI RGCY 6 cut(s) 22, 64, 140, 173, 194, 254
CviKI_1 RGCY 6 cut(s) 22, 64, 140, 173, 194, 254
DdeI CTNAG 3 cut(s) 141, 198, 207
EcoO109I RGGNCCY 1 cut(s) 62
FaeI CATG 1 cut(s) 170
FaiI YATR 3 cut(s) 33, 119, 168
FatI CATG 1 cut(s) 166
FauI CCCGC 1 cut(s) 236
FblI GTMKAC 1 cut(s) 237
FokI GGATG 1 cut(s) 119
FspBI CTAG 1 cut(s) 230
GlaI GCGC 1 cut(s) 28
HaeIII GGCC 1 cut(s) 64
HapII CCGG 3 cut(s) 59, 161, 219
HgaI GACGC 1 cut(s) 123
HhaI GCGC 1 cut(s) 29
Hin1I GRCGYC 1 cut(s) 134
Hin1II CATG 1 cut(s) 170
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HindIII AAGCTT 1 cut(s) 252
HinfI GANTC 1 cut(s) 203
HpaI GTTAAC 1 cut(s) 46
HpaII CCGG 3 cut(s) 59, 161, 219
Hpy166II GTNNAC 3 cut(s) 46, 129, 238
Hpy188I TCNGA 1 cut(s) 199
Hpy8I GTNNAC 3 cut(s) 46, 129, 238
HpyF3I CTNAG 3 cut(s) 141, 198, 207
Hsp92I GRCGYC 1 cut(s) 134
Hsp92II CATG 1 cut(s) 170
HspAI GCGC 1 cut(s) 27
KspAI GTTAAC 1 cut(s) 46
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 5 cut(s) 32, 72, 78, 174, 232
MaeI CTAG 1 cut(s) 230
MaeIII GTNAC 2 cut(s) 214, 221
MlyI GAGTC 1 cut(s) 197
MnlI CCTC 2 cut(s) 106, 193
MseI TTAA 1 cut(s) 45
MspA1I CMGCKG 1 cut(s) 140
MspI CCGG 3 cut(s) 59, 161, 219
MspR9I CCNGG 1 cut(s) 60
MvnI CGCG 1 cut(s) 29
NciI CCSGG 1 cut(s) 60
NlaIII CATG 1 cut(s) 170
NlaIV GGNNCC 1 cut(s) 63
NmuCI GTSAC 1 cut(s) 221
NspI RCATGY 1 cut(s) 170
PinAI ACCGGT 1 cut(s) 218
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 1 cut(s) 62
PvuII CAGCTG 1 cut(s) 140
SaqAI TTAA 1 cut(s) 45
Sau96I GGNCC 1 cut(s) 62
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 1 cut(s) 60
SetI ASST 4 cut(s) 8, 24, 142, 256
SsiI CCGC 2 cut(s) 243, 247
SspMI CTAG 1 cut(s) 230
StyD4I CCNGG 1 cut(s) 58
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TseFI GTSAC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 221
XceI RCATGY 1 cut(s) 170
XmiI GTMKAC 1 cut(s) 237
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.