Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001565.1

Orthogroup ID

OG0001933

Physical Location & Seq

Genomic Coordinates Reverse (-)

124286 .. 124630

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001565.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atgcttccagctccacatgcttatacaacatcgaaacatgccttaatcgggttggtgagatcggcttgcagtgagcttggtgcttatgggattcgagtgaactgcatttccccatttggtgttgcaacccctctttcgtgcaaggcttataacttggagccgaaagaggtcgaagccaatagtagtgtcattgcaaacttgaaggggactgtgttgaaggctaggcatatcgcagaggcagctatgtttcttgcttcagatgaatcctgttacgttagcggacacaacttggttgttgatggaggcttctcggtggttgatcacagtattccacccgccaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

114

Amino Acids

11.94

Weight (kDa)

6.49

Isoelectric Point (pI)

43.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23771 FvH4_3g25650 FvH4_3g25660
malus_domestica	MD11G1171900.v1.1 MD11G1172300.v1.1 MD12G1032600.v1.1
prunus_persica	Prupe.6G138400_v2.0.a1 Prupe.6G138600_v2.0.a1 Prupe.6G138700_v2.0.a1 Prupe.6G138800_v2.0.a1
pyrus_communis	pycom11g14280 pycom11g14340 pycom11g14350 pycom11g14410
rosa_chinensis	RchiOBHm_Chr5g0047121 RchiOBHm_Chr5g0047151
rosa_laevigata	RLG00000034467 RLG00000034469 RLG00000034471 RLG00000034472 RLG00000034473
rosa_multiflora	Rmu_co8232047.1_g000001 Rmu_co8263687.1_g000001 Rmu_sc0001565.1_g000029 Rmu_sc0003154.1_g000029 Rmu_sc0005145.1_g000014 Rmu_sc0019535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034260 Rroxscaffold_1G00034290 Rroxscaffold_1G00034310
rosa_rugosa	Rorug05G0234100 Rorug05G0234200 Rorug05G0234400 Rorug05G0234500 Rorug05G0234700
rosa_samantha	Rh5AG313100 Rh5AG313200 Rh5BG322100 Rh5CG348500 Rh5CG348600 Rh5CG348700 Rh5CG348900 Rh5CG349100 Rh5DG333100 Rh5DG333200
rosa_wichuraiana	Rw5G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	150
AciI	CCGC	2 cut(s)	279, 336
AcuI	CTGAAG	1 cut(s)	240
AfiI	CCNNNNNNNGG	1 cut(s)	48
AgsI	TTSAA	2 cut(s)	202, 217
AloI	GAACNNNNNNTCC	2 cut(s)	92, 124
AluBI	AGCT	3 cut(s)	11, 76, 242
AluI	AGCT	3 cut(s)	11, 76, 242
ApeKI	GCWGC	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	251
BccI	CCATC	1 cut(s)	293
BcgI	CGANNNNNNTGC	2 cut(s)	84, 118
BclI	TGATCA	1 cut(s)	319
BfaI	CTAG	1 cut(s)	222
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
BmiI	GGNNCC	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
Bse3DI	GCAATG	1 cut(s)	189
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseMI	GCAATG	1 cut(s)	189
BseXI	GCAGC	1 cut(s)	251
BslFI	GGGAC	1 cut(s)	220
BslI	CCNNNNNNNGG	1 cut(s)	48
BsmFI	GGGAC	1 cut(s)	220
Bsp143I	GATC	2 cut(s)	59, 319
BspACI	CCGC	2 cut(s)	279, 336
BspLI	GGNNCC	1 cut(s)	159
BsrDI	GCAATG	1 cut(s)	189
BssMI	GATC	2 cut(s)	59, 319
Bst4CI	ACNGT	2 cut(s)	211, 326
BstC8I	GCNNGC	1 cut(s)	67
BstKTI	GATC	2 cut(s)	62, 322
BstMBI	GATC	2 cut(s)	59, 319
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 239
BstNSI	RCATGY	2 cut(s)	20, 41
BstV1I	GCAGC	1 cut(s)	251
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	67
CviAII	CATG	2 cut(s)	17, 38
CviJI	RGCY	9 cut(s)	11, 65, 76, 146, 160, 176, 221, 242, 306
CviKI_1	RGCY	9 cut(s)	11, 65, 76, 146, 160, 176, 221, 242, 306
DpnI	GATC	2 cut(s)	61, 321
DpnII	GATC	2 cut(s)	59, 319
Eco57I	CTGAAG	1 cut(s)	240
FaeI	CATG	2 cut(s)	20, 41
FaiI	YATR	7 cut(s)	18, 24, 39, 87, 150, 228, 245
FaqI	GGGAC	1 cut(s)	220
FatI	CATG	2 cut(s)	16, 37
FauI	CCCGC	1 cut(s)	343
FbaI	TGATCA	1 cut(s)	319
Fnu4HI	GCNGC	1 cut(s)	240
Fsp4HI	GCNGC	1 cut(s)	240
FspBI	CTAG	1 cut(s)	222
GluI	GCNGC	1 cut(s)	240
Hin1II	CATG	2 cut(s)	20, 41
HinfI	GANTC	2 cut(s)	91, 263
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	1 cut(s)	259
Hpy8I	GTNNAC	1 cut(s)	100
HpyAV	CCTTC	2 cut(s)	196, 211
HpyCH4III	ACNGT	2 cut(s)	211, 326
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	5 cut(s)	69, 105, 125, 141, 194
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 239
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	2 cut(s)	20, 41
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	2 cut(s)	59, 319
LmnI	GCTCC	2 cut(s)	16, 157
LpnPI	CCDG	2 cut(s)	21, 280
Lsp1109I	GCAGC	1 cut(s)	251
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	2 cut(s)	61, 321
MboI	GATC	2 cut(s)	59, 319
MnlI	CCTC	4 cut(s)	141, 160, 229, 296
MseI	TTAA	1 cut(s)	44
MwoI	GCNNNNNNNGC	2 cut(s)	17, 239
NdeII	GATC	2 cut(s)	59, 319
NlaIII	CATG	2 cut(s)	20, 41
NlaIV	GGNNCC	1 cut(s)	159
NspI	RCATGY	2 cut(s)	20, 41
PfeI	GAWTC	2 cut(s)	91, 263
PkrI	GCNGC	1 cut(s)	241
PsiI	TTATAA	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	44
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	2 cut(s)	59, 319
SetI	ASST	5 cut(s)	13, 78, 171, 244, 276
SsiI	CCGC	2 cut(s)	279, 336
SspMI	CTAG	1 cut(s)	222
TaaI	ACNGT	2 cut(s)	211, 326
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	3 cut(s)	32, 94, 171
TfiI	GAWTC	2 cut(s)	91, 263
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TscAI	CASTG	1 cut(s)	76
TseI	GCWGC	1 cut(s)	239
TspDTI	ATGAA	1 cut(s)	276
TspRI	CASTG	1 cut(s)	76
XceI	RCATGY	2 cut(s)	20, 41
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.