Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001933

Physical Location & Seq

Genomic Coordinates Reverse (-)

19067090 .. 19067488

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1172300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGATCCCGGCAGGCCAAGGCAGCATAATCAACACTGCTAGTGTTTGTTCTGCCATTGGCGGATGTGCTCCACATGCCTACACAAGTTCGAAGCACGGTGTAGTGGGGCTAATGAAAAATGTGGCCGTGGAGCTTGGACAATACGGTATTCGTGTAAATTGCGTGTCGCCATACGTAGTTGCAACGCCGTTGGCGAAGGACTTCTTAAATCTTGATGACGATGAAGTACGTGGAGTTTATTCCAACCTTAAAGGTAAGGTTCTTGGGCCAGAAGATGTTGCTGGGGCTGCTCTTTACTTGGGTAGTGATGAGTCAAAGTATGTTAGTGGGCATAATCTTTTGGTGGATGGAGGTTTTAGTATTCTGAACCCAGGGTTTTGCATGTTTGAGAAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

133

Amino Acids

13.73

Weight (kDa)

5.46

Isoelectric Point (pI)

17.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	1 - 67	7.4e-17	short chain dehydrogenase
adh_short_C2	PF13561	5 - 120	1.7e-30	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23771 FvH4_3g25650 FvH4_3g25660
malus_domestica	MD11G1171900.v1.1 MD11G1172300.v1.1 MD12G1032600.v1.1
prunus_persica	Prupe.6G138400_v2.0.a1 Prupe.6G138600_v2.0.a1 Prupe.6G138700_v2.0.a1 Prupe.6G138800_v2.0.a1
pyrus_communis	pycom11g14280 pycom11g14340 pycom11g14350 pycom11g14410
rosa_chinensis	RchiOBHm_Chr5g0047121 RchiOBHm_Chr5g0047151
rosa_laevigata	RLG00000034467 RLG00000034469 RLG00000034471 RLG00000034472 RLG00000034473
rosa_multiflora	Rmu_co8232047.1_g000001 Rmu_co8263687.1_g000001 Rmu_sc0001565.1_g000029 Rmu_sc0003154.1_g000029 Rmu_sc0005145.1_g000014 Rmu_sc0019535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034260 Rroxscaffold_1G00034290 Rroxscaffold_1G00034310
rosa_rugosa	Rorug05G0234100 Rorug05G0234200 Rorug05G0234400 Rorug05G0234500 Rorug05G0234700
rosa_samantha	Rh5AG313100 Rh5AG313200 Rh5BG322100 Rh5CG348500 Rh5CG348600 Rh5CG348700 Rh5CG348900 Rh5CG349100 Rh5DG333100 Rh5DG333200
rosa_wichuraiana	Rw5G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	60
AcoI	YGGCCR	1 cut(s)	123
AfaI	GTAC	1 cut(s)	228
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
Alw21I	GWGCWC	1 cut(s)	70
AoxI	GGCC	3 cut(s)	13, 123, 266
ApeKI	GCWGC	2 cut(s)	21, 287
Asp700I	GAANNNNTTC	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	266
AsuC2I	CCSGG	1 cut(s)	8
AsuII	TTCGAA	1 cut(s)	89
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	33, 274
BccI	CCATC	1 cut(s)	341
BceAI	ACGGC	2 cut(s)	110, 172
BciT130I	CCWGG	1 cut(s)	372
BcnI	CCSGG	1 cut(s)	8
BfaI	CTAG	1 cut(s)	39
BisI	GCNGC	2 cut(s)	22, 288
BlsI	GCNGC	2 cut(s)	23, 289
Bme1390I	CCNGG	2 cut(s)	8, 372
BmgT120I	GGNCC	1 cut(s)	266
BmrFI	CCNGG	2 cut(s)	8, 372
Bpu14I	TTCGAA	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	8
BsaAI	YACGTR	2 cut(s)	175, 230
BsaJI	CCNNGG	4 cut(s)	16, 126, 370, 371
BseBI	CCWGG	1 cut(s)	372
BseDI	CCNNGG	4 cut(s)	16, 126, 370, 371
BseGI	GGATG	2 cut(s)	68, 352
BseXI	GCAGC	2 cut(s)	33, 274
BseYI	CCCAGC	1 cut(s)	281
BshFI	GGCC	3 cut(s)	15, 125, 268
BsiHKAI	GWGCWC	1 cut(s)	70
BsiSI	CCGG	1 cut(s)	8
BsnI	GGCC	3 cut(s)	15, 125, 268
Bsp119I	TTCGAA	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	1 cut(s)	60
BspANI	GGCC	3 cut(s)	15, 125, 268
BspT104I	TTCGAA	1 cut(s)	89
BssECI	CCNNGG	4 cut(s)	16, 126, 370, 371
BssMI	GATC	1 cut(s)	3
BssT1I	CCWWGG	1 cut(s)	16
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	2 cut(s)	98, 146
BstBAI	YACGTR	2 cut(s)	175, 230
BstBI	TTCGAA	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	13
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	2 cut(s)	68, 352
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 74, 287
BstNI	CCWGG	1 cut(s)	372
BstNSI	RCATGY	2 cut(s)	77, 385
BstSCI	CCNGG	2 cut(s)	6, 370
BstSNI	TACGTA	1 cut(s)	175
BstV1I	GCAGC	2 cut(s)	33, 274
BsuRI	GGCC	3 cut(s)	15, 125, 268
BtgI	CCRYGG	1 cut(s)	126
BtsCI	GGATG	2 cut(s)	68, 352
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	266
Csp6I	GTAC	1 cut(s)	227
CviAII	CATG	2 cut(s)	74, 382
CviJI	RGCY	6 cut(s)	15, 109, 125, 133, 268, 287
CviKI_1	RGCY	6 cut(s)	15, 109, 125, 133, 268, 287
CviQI	GTAC	1 cut(s)	227
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
EaeI	YGGCCR	1 cut(s)	123
EciI	GGCGGA	1 cut(s)	75
Eco105I	TACGTA	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	16
EcoRII	CCWGG	1 cut(s)	370
EcoT14I	CCWWGG	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	2 cut(s)	77, 385
FaiI	YATR	6 cut(s)	26, 75, 172, 321, 333, 383
FalI	AAGNNNNNCTT	2 cut(s)	188, 220
FatI	CATG	2 cut(s)	73, 381
Fnu4HI	GCNGC	2 cut(s)	22, 288
FokI	GGATG	2 cut(s)	75, 359
Fsp4HI	GCNGC	2 cut(s)	22, 288
FspBI	CTAG	1 cut(s)	39
GluI	GCNGC	2 cut(s)	22, 288
GsaI	CCCAGC	1 cut(s)	285
HaeIII	GGCC	3 cut(s)	15, 125, 268
HapII	CCGG	1 cut(s)	8
Hin1II	CATG	2 cut(s)	77, 385
HinfI	GANTC	1 cut(s)	311
HpaII	CCGG	1 cut(s)	8
Hpy188I	TCNGA	1 cut(s)	366
Hpy188III	TCNNGA	2 cut(s)	212, 396
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	2 cut(s)	98, 146
HpyCH4IV	ACGT	2 cut(s)	174, 229
HpyCH4V	TGCA	2 cut(s)	182, 381
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 74, 287
HpySE526I	ACGT	2 cut(s)	174, 229
Hsp92II	CATG	2 cut(s)	77, 385
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	2 cut(s)	73, 130
LpnPI	CCDG	5 cut(s)	21, 267, 282, 357, 384
Lsp1109I	GCAGC	2 cut(s)	33, 274
MaeI	CTAG	1 cut(s)	39
MaeII	ACGT	2 cut(s)	174, 229
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	1 cut(s)	284
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	1 cut(s)	157
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	1 cut(s)	344
MroXI	GAANNNNTTC	1 cut(s)	200
MseI	TTAA	2 cut(s)	206, 249
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	2 cut(s)	8, 372
MvaI	CCWGG	1 cut(s)	372
MwoI	GCNNNNNNNGC	3 cut(s)	21, 74, 287
NciI	CCSGG	1 cut(s)	8
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	2 cut(s)	77, 385
NspI	RCATGY	2 cut(s)	77, 385
NspV	TTCGAA	1 cut(s)	89
PasI	CCCWGGG	1 cut(s)	371
PcsI	WCGNNNNNNNCGW	1 cut(s)	191
PdmI	GAANNNNTTC	1 cut(s)	200
PkrI	GCNGC	2 cut(s)	23, 289
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
Ppu21I	YACGTR	2 cut(s)	175, 230
Psp6I	CCWGG	1 cut(s)	370
PspFI	CCCAGC	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	370
PspPI	GGNCC	1 cut(s)	266
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
SaqAI	TTAA	2 cut(s)	206, 249
SatI	GCNGC	2 cut(s)	22, 288
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	266
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	2 cut(s)	8, 372
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	7 cut(s)	135, 177, 232, 249, 256, 261, 355
SfuI	TTCGAA	1 cut(s)	89
SnaBI	TACGTA	1 cut(s)	175
Sse9I	AATT	1 cut(s)	157
SsiI	CCGC	1 cut(s)	60
SspMI	CTAG	1 cut(s)	39
StyD4I	CCNGG	2 cut(s)	6, 370
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	2 cut(s)	98, 146
TaiI	ACGT	2 cut(s)	177, 232
TaqI	TCGA	1 cut(s)	89
TasI	AATT	1 cut(s)	157
Tru1I	TTAA	2 cut(s)	206, 249
Tru9I	TTAA	2 cut(s)	206, 249
TscAI	CASTG	1 cut(s)	40
TseI	GCWGC	2 cut(s)	21, 287
TspDTI	ATGAA	2 cut(s)	128, 237
TspRI	CASTG	1 cut(s)	40
XceI	RCATGY	2 cut(s)	77, 385
XmnI	GAANNNNTTC	1 cut(s)	200
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.