Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001933

Physical Location & Seq

Genomic Coordinates Forward (+)

11267047 .. 11269044

Gene Structure 1998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G138700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGAGCATGGGAAGTTTCTCATTACTTGCTGCTGCTGCAAGAAGGCTTGAAGGTAAAGTGGCCCTAATCACTGGTGGAGCGAGCGGCATAGGAGAGTCCACTGCAAGACTCTTCTCAAAACATGGAGCTAGAGTTGTGATTGCAGATGTGCAAGACGGCTTGGCTGAATCTGTTTGCAGAGATCTAAGCTCTTCGTCCATCTCATTTGTCCATTGCGATGTAACGAAAGAAGAAGATGTGGAAAACGCTGTCAAAACAGCCACAAGAAAATATGGAAAGCTTGACATCATGTTCAACAATGCAGGCACAGGTGGCGTAGCAAAACCTAACATCCTTGACAATGACAAGGCAGAATTTGAGCAAGTGATTAGGGTAAATCTGATTGGTGCGTTTTTGGGGATCAAACATGCAGCTCGCGTTATGATCCCAGCTGGCCAAGGGAGCATAATTAACACTGCTAGTGTGTGTTCCACCATCGGGGGCGGCTCATCACATGCATACACAAGTTCAAAGCATGGTATAGTAGGGTTGATGAGAAATACAGCAGTGGAGCTCGGACAACACGGTATTCGTGTGAATTGTGTGTCGCCGTATATAGTTGCCACACCGTTGGCAAAGAACTTCTTTAAGCTTGATGATAATGGAGTTCATGGTGCTTATTCCAACCTTAAAGGTGGGGTTCTCAAGGTAGAAGACATTGCTGAAGCTGCTCTTTACTTGGGTAGTGATGAGTCTAAGTATGTTAGTGGGCATAATCTTTTGGTCGATGGAGGCTTCACCATTGTAAACCCAAGGTTTTGCATGTTTGAACAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

273

Amino Acids

28.6

Weight (kDa)

7.08

Isoelectric Point (pI)

20.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23771 FvH4_3g25650 FvH4_3g25660
malus_domestica	MD11G1171900.v1.1 MD11G1172300.v1.1 MD12G1032600.v1.1
prunus_persica	Prupe.6G138400_v2.0.a1 Prupe.6G138600_v2.0.a1 Prupe.6G138700_v2.0.a1 Prupe.6G138800_v2.0.a1
pyrus_communis	pycom11g14280 pycom11g14340 pycom11g14350 pycom11g14410
rosa_chinensis	RchiOBHm_Chr5g0047121 RchiOBHm_Chr5g0047151
rosa_laevigata	RLG00000034467 RLG00000034469 RLG00000034471 RLG00000034472 RLG00000034473
rosa_multiflora	Rmu_co8232047.1_g000001 Rmu_co8263687.1_g000001 Rmu_sc0001565.1_g000029 Rmu_sc0003154.1_g000029 Rmu_sc0005145.1_g000014 Rmu_sc0019535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034260 Rroxscaffold_1G00034290 Rroxscaffold_1G00034310
rosa_rugosa	Rorug05G0234100 Rorug05G0234200 Rorug05G0234400 Rorug05G0234500 Rorug05G0234700
rosa_samantha	Rh5AG313100 Rh5AG313200 Rh5BG322100 Rh5CG348500 Rh5CG348600 Rh5CG348700 Rh5CG348900 Rh5CG349100 Rh5DG333100 Rh5DG333200
rosa_wichuraiana	Rw5G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	84
AccII	CGCG	1 cut(s)	417
AciI	CCGC	2 cut(s)	84, 483
AclWI	GGATC	2 cut(s)	407, 418
AcoI	YGGCCR	1 cut(s)	433
AcsI	RAATTY	1 cut(s)	353
AcuI	CTGAAG	1 cut(s)	723
AfiI	CCNNNNNNNGG	1 cut(s)	477
AgsI	TTSAA	4 cut(s)	50, 295, 510, 809
AluBI	AGCT	8 cut(s)	128, 189, 280, 413, 431, 553, 631, 707
AluI	AGCT	8 cut(s)	128, 189, 280, 413, 431, 553, 631, 707
Alw21I	GWGCWC	1 cut(s)	555
AlwI	GGATC	2 cut(s)	407, 418
AoxI	GGCC	2 cut(s)	60, 433
ApeKI	GCWGC	5 cut(s)	29, 32, 35, 410, 707
ApoI	RAATTY	1 cut(s)	353
AspS9I	GGNCC	1 cut(s)	61
AsuHPI	GGTGA	1 cut(s)	769
BalI	TGGCCA	1 cut(s)	435
BanII	GRGCYC	1 cut(s)	555
BbsI	GAAGAC	1 cut(s)	699
Bbv12I	GWGCWC	1 cut(s)	555
BbvI	GCAGC	5 cut(s)	16, 19, 22, 422, 694
BccI	CCATC	3 cut(s)	206, 482, 761
BceAI	ACGGC	2 cut(s)	172, 574
BfaI	CTAG	2 cut(s)	129, 459
BglII	AGATCT	1 cut(s)	181
BisI	GCNGC	7 cut(s)	30, 33, 36, 85, 411, 484, 708
BlsI	GCNGC	7 cut(s)	31, 34, 37, 86, 412, 485, 709
BmgT120I	GGNCC	1 cut(s)	61
BpiI	GAAGAC	1 cut(s)	699
BpuEI	CTTGAG	1 cut(s)	668
BsaJI	CCNNGG	2 cut(s)	436, 791
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bsc4I	CCNNNNNNNGG	1 cut(s)	477
Bse1I	ACTGG	1 cut(s)	76
Bse3DI	GCAATG	2 cut(s)	211, 696
BseDI	CCNNGG	2 cut(s)	436, 791
BseGI	GGATG	1 cut(s)	330
BseLI	CCNNNNNNNGG	1 cut(s)	477
BseMI	GCAATG	2 cut(s)	211, 696
BseNI	ACTGG	1 cut(s)	76
BseXI	GCAGC	5 cut(s)	16, 19, 22, 422, 694
BseYI	CCCAGC	1 cut(s)	427
Bsh1236I	CGCG	1 cut(s)	417
BshFI	GGCC	2 cut(s)	62, 435
BsiHKAI	GWGCWC	1 cut(s)	555
BslI	CCNNNNNNNGG	1 cut(s)	477
BsnI	GGCC	2 cut(s)	62, 435
Bsp1286I	GDGCHC	1 cut(s)	555
Bsp143I	GATC	3 cut(s)	181, 399, 423
BspACI	CCGC	2 cut(s)	84, 483
BspANI	GGCC	2 cut(s)	62, 435
BspFNI	CGCG	1 cut(s)	417
BspPI	GGATC	2 cut(s)	407, 418
BspQI	GCTCTTC	1 cut(s)	196
BsrBI	CCGCTC	1 cut(s)	84
BsrDI	GCAATG	2 cut(s)	211, 696
BsrI	ACTGG	1 cut(s)	76
BssECI	CCNNGG	2 cut(s)	436, 791
BssMI	GATC	3 cut(s)	181, 399, 423
BssT1I	CCWWGG	2 cut(s)	436, 791
Bst4CI	ACNGT	2 cut(s)	566, 609
Bst6I	CTCTTC	2 cut(s)	116, 196
BstC8I	GCNNGC	4 cut(s)	82, 304, 415, 433
BstDEI	CTNAG	2 cut(s)	185, 735
BstF5I	GGATG	1 cut(s)	330
BstFNI	CGCG	1 cut(s)	417
BstKTI	GATC	3 cut(s)	184, 402, 426
BstMBI	GATC	3 cut(s)	181, 399, 423
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 312, 441, 707
BstNSI	RCATGY	3 cut(s)	410, 497, 805
BstUI	CGCG	1 cut(s)	417
BstV1I	GCAGC	5 cut(s)	16, 19, 22, 422, 694
BstV2I	GAAGAC	1 cut(s)	699
BstX2I	RGATCY	1 cut(s)	181
BstXI	CCANNNNNNTGG	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	181
BsuRI	GGCC	2 cut(s)	62, 435
BtgZI	GCGATG	1 cut(s)	231
BtsCI	GGATG	1 cut(s)	330
BtsI	GCAGTG	3 cut(s)	99, 453, 552
BtsIMutI	CAGTG	4 cut(s)	69, 99, 453, 552
Cac8I	GCNNGC	4 cut(s)	82, 304, 415, 433
Cfr13I	GGNCC	1 cut(s)	61
CviAII	CATG	8 cut(s)	7, 122, 289, 407, 494, 515, 650, 802
DdeI	CTNAG	2 cut(s)	185, 735
DpnI	GATC	3 cut(s)	183, 401, 425
DpnII	GATC	3 cut(s)	181, 399, 423
EaeI	YGGCCR	1 cut(s)	433
Eam1104I	CTCTTC	2 cut(s)	116, 196
EarI	CTCTTC	2 cut(s)	116, 196
Ecl136II	GAGCTC	1 cut(s)	553
Eco130I	CCWWGG	2 cut(s)	436, 791
Eco24I	GRGCYC	1 cut(s)	555
Eco53kI	GAGCTC	1 cut(s)	553
Eco57I	CTGAAG	1 cut(s)	723
EcoICRI	GAGCTC	1 cut(s)	553
EcoT14I	CCWWGG	2 cut(s)	436, 791
EcoT22I	ATGCAT	1 cut(s)	499
EcoT38I	GRGCYC	1 cut(s)	555
ErhI	CCWWGG	2 cut(s)	436, 791
FaeI	CATG	8 cut(s)	10, 125, 292, 410, 497, 518, 653, 805
FalI	AAGNNNNNCTT	4 cut(s)	608, 640, 696, 728
FatI	CATG	8 cut(s)	6, 121, 288, 406, 493, 514, 649, 801
Fnu4HI	GCNGC	7 cut(s)	30, 33, 36, 85, 411, 484, 708
FokI	GGATG	1 cut(s)	317
FriOI	GRGCYC	1 cut(s)	555
Fsp4HI	GCNGC	7 cut(s)	30, 33, 36, 85, 411, 484, 708
FspBI	CTAG	2 cut(s)	129, 459
GluI	GCNGC	7 cut(s)	30, 33, 36, 85, 411, 484, 708
GsaI	CCCAGC	1 cut(s)	431
HaeIII	GGCC	2 cut(s)	62, 435
Hin1II	CATG	8 cut(s)	10, 125, 292, 410, 497, 518, 653, 805
HindIII	AAGCTT	2 cut(s)	278, 629
HinfI	GANTC	4 cut(s)	95, 108, 167, 731
HphI	GGTGA	1 cut(s)	769
Hpy166II	GTNNAC	2 cut(s)	99, 787
Hpy188I	TCNGA	2 cut(s)	381, 557
Hpy188III	TCNNGA	1 cut(s)	816
Hpy8I	GTNNAC	2 cut(s)	99, 787
HpyAV	CCTTC	2 cut(s)	36, 44
HpyCH4III	ACNGT	2 cut(s)	566, 609
HpyCH4V	TGCA	9 cut(s)	38, 104, 143, 151, 177, 302, 410, 497, 801
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 312, 441, 707
HpyF3I	CTNAG	2 cut(s)	185, 735
Hsp92II	CATG	8 cut(s)	10, 125, 292, 410, 497, 518, 653, 805
Kzo9I	GATC	3 cut(s)	181, 399, 423
LguI	GCTCTTC	1 cut(s)	196
LmnI	GCTCC	4 cut(s)	77, 125, 441, 550
LpnPI	CCDG	5 cut(s)	57, 288, 294, 417, 441
Lsp1109I	GCAGC	5 cut(s)	16, 19, 22, 422, 694
MaeI	CTAG	2 cut(s)	129, 459
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	3 cut(s)	183, 401, 425
MbiI	CCGCTC	1 cut(s)	84
MboI	GATC	3 cut(s)	181, 399, 423
MboII	GAAGA	5 cut(s)	103, 183, 242, 245, 704
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	555
MlsI	TGGCCA	1 cut(s)	435
MluCI	AATT	3 cut(s)	353, 447, 577
MluNI	TGGCCA	1 cut(s)	435
MlyI	GAGTC	3 cut(s)	102, 104, 740
MmeI	TCCRAC	1 cut(s)	687
MnlI	CCTC	1 cut(s)	764
Mox20I	TGGCCA	1 cut(s)	435
Mph1103I	ATGCAT	1 cut(s)	499
MscI	TGGCCA	1 cut(s)	435
MseI	TTAA	3 cut(s)	450, 627, 669
MslI	CAYNNNNRTG	1 cut(s)	216
Msp20I	TGGCCA	1 cut(s)	435
MspA1I	CMGCKG	1 cut(s)	431
MvnI	CGCG	1 cut(s)	417
MwoI	GCNNNNNNNGC	4 cut(s)	35, 312, 441, 707
NdeII	GATC	3 cut(s)	181, 399, 423
NlaIII	CATG	8 cut(s)	10, 125, 292, 410, 497, 518, 653, 805
NsiI	ATGCAT	1 cut(s)	499
NspI	RCATGY	3 cut(s)	410, 497, 805
PciSI	GCTCTTC	1 cut(s)	196
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	7 cut(s)	31, 34, 37, 86, 412, 485, 709
PleI	GAGTC	3 cut(s)	102, 103, 739
PpsI	GAGTC	3 cut(s)	102, 103, 739
Psp124BI	GAGCTC	1 cut(s)	555
PspFI	CCCAGC	1 cut(s)	427
PspPI	GGNCC	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	181
PvuII	CAGCTG	1 cut(s)	431
RseI	CAYNNNNRTG	1 cut(s)	216
SacI	GAGCTC	1 cut(s)	555
SapI	GCTCTTC	1 cut(s)	196
SaqAI	TTAA	3 cut(s)	450, 627, 669
SatI	GCNGC	7 cut(s)	30, 33, 36, 85, 411, 484, 708
Sau3AI	GATC	3 cut(s)	181, 399, 423
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	3 cut(s)	102, 104, 740
SduI	GDGCHC	1 cut(s)	555
SmiMI	CAYNNNNRTG	1 cut(s)	216
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
Sse9I	AATT	3 cut(s)	353, 447, 577
SsiI	CCGC	2 cut(s)	84, 483
SspMI	CTAG	2 cut(s)	129, 459
SstI	GAGCTC	1 cut(s)	555
StyI	CCWWGG	2 cut(s)	436, 791
TaaI	ACNGT	2 cut(s)	566, 609
TaqI	TCGA	1 cut(s)	765
TasI	AATT	3 cut(s)	353, 447, 577
TauI	GCSGC	2 cut(s)	87, 486
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	3 cut(s)	450, 627, 669
Tru9I	TTAA	3 cut(s)	450, 627, 669
TscAI	CASTG	4 cut(s)	76, 106, 460, 552
TseI	GCWGC	5 cut(s)	29, 32, 35, 410, 707
TspDTI	ATGAA	1 cut(s)	638
TspRI	CASTG	4 cut(s)	76, 106, 460, 552
XapI	RAATTY	1 cut(s)	353
XceI	RCATGY	3 cut(s)	410, 497, 805
XspI	CTAG	2 cut(s)	129, 459
Zsp2I	ATGCAT	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.