Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001933

Physical Location & Seq

Genomic Coordinates Reverse (-)

24476891 .. 24482706

Gene Structure 5816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0234100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1620 bp

ATGACGGATTCGAACTGGAGCTCAGATATGCAATCTCAGATCCCGGAGGTCGAAGTCGCCAGAAGAGGACTTTGGTCTGTAAGGCTGTTCTTTGGTGGAAGATATGGGGGCGAAGATTTGGGATTTGAGAAGGTCCGAGGACCAGTTGGGACTGTTAGTGAAGGAGAGAATTCCACCAAGGAAAATGGGAAACTGGAAGAAGGGTCAGGCCATAATGAGCCCATAAAATTTGGATCACATGGTGATGAAACGGCTAAAAAGGAAGGGAATGGGGTTGCAGTACAAAACTTCCCTCAAGATGCAGTTGATGAGTGGCCTGCCCCTAAGCAGATCCATTCTTTTTATTTCGTCAGCAACCGGACATATGATGATCCAAAAAAAATTGCGGATGAGAAATTTAAGGAGATTGAGCCTCTGCAGAAGGATCTCAAAAAGCTCCGCACTGCAGATCATGCTGGTCGCAATGGTGGTTTGTGCTCATCTGAGGAAGAGCTTGATGCTCGGATCAAAGGCTTGCAGTATATCATACAACATGAGAGCATTCCATTGTCTGAGGAGAAGAAAATCCTTAAAGAGATCAAACAACTTGAAAACACACGTGGAGAAGTCATTGCTAATGCTGCTGTACGAGCCAAGATTCAGGAATCAGTGGTTCATATGGACAAAGAGGCCCTTCAAGACCTGGTTAAACTTATAGGTGGTGATTTGGATGGAGTAAGGAAAGAGCAACAAGCAGTTGGGTCCAAAATTCAGCAACTTGATGATGCAATTAAGGCCGTAGATAAGCAAATTTCATCAATATGGGATGAGCTGAAGATTGTAACTGATAAGAGGGATCAAGCACAACAGAGCATTTTTACATTTAGGCAGCAGCTTGATCAGCAAAATGCCTCCTTTTACCTAAGCCGTAATATCTTGAACAAAGCAAGAGGTTTGGCTATCAAGAATGATGTTAAAGCACTTGAAGAGCTTACTCATGCAGATTGGAATAGTAAAAAGGATTTTAGGGATGAATATGAGAAAAGAATTTTGTTGTCTCTGGATGGTCGGCAATTGAGTAGGGATGGACGAATAAGAAACCCAGATGAAAAGCCATTGGTGGTTCATGAAGTGTCCACACCCATAGTAGTAGAGTCGGCAACAAAAGCTAATACAAAACAAGTCAAGGAAGATGGCAGATCTGCTCCATTAGATAGTTTGCCTGTGCAGAAGGTTCAGAAAGAAGCCAAAAGTAAAGCAGTGCCTCCAAAATCTACTGTAGACGAAGACAAGGAGATATATGGGCTTGAGAAGCCGAAACAGGACAGTAAAGAGCGTGAAAAGAAGGCAAAGAAGAAGGCTACATCGGCAACTGAGAGCAATCCTGATGAGGCAACGGAACCAATTGCTGAATTTGCAGAACCAGAAAAGGTAAATGAAAATGTTGAAGTTCCGGTCCCTGCTAAGGAGAAGGTGCAAAAGGATAAAACTATCAGGAATAGGGGTCGTCCAAGAGGTCCAGACTCACTTCCGAAAGCTATCCTGAAGCGGAAGAAGAGTAATAATTATTGGGTACGGGCAGCTCCTGCAGCTTGGTTAGTTGTGGTGTTTCTAGCACTCGGTTACTACTATCTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

539

Amino Acids

60.65

Weight (kDa)

7.67

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23771 FvH4_3g25650 FvH4_3g25660
malus_domestica	MD11G1171900.v1.1 MD11G1172300.v1.1 MD12G1032600.v1.1
prunus_persica	Prupe.6G138400_v2.0.a1 Prupe.6G138600_v2.0.a1 Prupe.6G138700_v2.0.a1 Prupe.6G138800_v2.0.a1
pyrus_communis	pycom11g14280 pycom11g14340 pycom11g14350 pycom11g14410
rosa_chinensis	RchiOBHm_Chr5g0047121 RchiOBHm_Chr5g0047151
rosa_laevigata	RLG00000034467 RLG00000034469 RLG00000034471 RLG00000034472 RLG00000034473
rosa_multiflora	Rmu_co8232047.1_g000001 Rmu_co8263687.1_g000001 Rmu_sc0001565.1_g000029 Rmu_sc0003154.1_g000029 Rmu_sc0005145.1_g000014 Rmu_sc0019535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034260 Rroxscaffold_1G00034290 Rroxscaffold_1G00034310
rosa_rugosa	Rorug05G0234100 Rorug05G0234200 Rorug05G0234400 Rorug05G0234500 Rorug05G0234700
rosa_samantha	Rh5AG313100 Rh5AG313200 Rh5BG322100 Rh5CG348500 Rh5CG348600 Rh5CG348700 Rh5CG348900 Rh5CG349100 Rh5DG333100 Rh5DG333200
rosa_wichuraiana	Rw5G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1260
AciI	CCGC	3 cut(s)	386, 439, 1528
AclWI	GGATC	7 cut(s)	34, 241, 325, 365, 432, 512, 843
AcsI	RAATTY	7 cut(s)	169, 227, 395, 747, 789, 1026, 1391
AcuI	CTGAAG	2 cut(s)	833, 1544
AcvI	CACGTG	1 cut(s)	599
AdeI	CACNNNGTG	1 cut(s)	242
AfaI	GTAC	3 cut(s)	282, 627, 1554
AfiI	CCNNNNNNNGG	1 cut(s)	1444
AflIII	ACRYGT	1 cut(s)	596
AgsI	TTSAA	5 cut(s)	590, 677, 919, 965, 1427
AjnI	CCWGG	1 cut(s)	681
AjuI	GAANNNNNNNTTGG	2 cut(s)	55, 87
Alw21I	GWGCWC	2 cut(s)	23, 479
Alw26I	GTCTC	1 cut(s)	1041
AlwI	GGATC	7 cut(s)	34, 241, 325, 365, 432, 512, 843
AlwNI	CAGNNNCTG	1 cut(s)	1565
AoxI	GGCC	4 cut(s)	208, 314, 669, 774
ApeKI	GCWGC	5 cut(s)	620, 868, 871, 1559, 1568
ApoI	RAATTY	7 cut(s)	169, 227, 395, 747, 789, 1026, 1391
AspS9I	GGNCC	6 cut(s)	133, 140, 670, 741, 1435, 1496
AsuC2I	CCSGG	1 cut(s)	44
AsuHPI	GGTGA	2 cut(s)	254, 713
AsuII	TTCGAA	1 cut(s)	11
AvaII	GGWCC	5 cut(s)	133, 140, 741, 1435, 1496
BanII	GRGCYC	2 cut(s)	23, 222
BbrPI	CACGTG	1 cut(s)	599
BbsI	GAAGAC	1 cut(s)	1272
Bbv12I	GWGCWC	2 cut(s)	23, 479
BbvI	GCAGC	5 cut(s)	607, 880, 883, 1571, 1580
BccI	CCATC	4 cut(s)	704, 1037, 1058, 1166
BceAI	ACGGC	3 cut(s)	267, 761, 891
BciT130I	CCWGG	1 cut(s)	683
BclI	TGATCA	1 cut(s)	877
BcnI	CCSGG	1 cut(s)	44
BcoDI	GTCTC	1 cut(s)	1041
BfaI	CTAG	1 cut(s)	1592
BfmI	CTRYAG	4 cut(s)	416, 444, 1257, 1566
BglII	AGATCT	1 cut(s)	1178
BisI	GCNGC	5 cut(s)	621, 869, 872, 1560, 1569
BlsI	GCNGC	5 cut(s)	622, 870, 873, 1561, 1570
Bme1390I	CCNGG	2 cut(s)	44, 683
Bme18I	GGWCC	5 cut(s)	133, 140, 741, 1435, 1496
BmgT120I	GGNCC	6 cut(s)	133, 140, 670, 741, 1435, 1496
BmiI	GGNNCC	3 cut(s)	742, 1380, 1437
BmrFI	CCNGG	2 cut(s)	44, 683
BmsI	GCATC	3 cut(s)	289, 487, 754
BoxI	GACNNNNGTC	1 cut(s)	73
BpiI	GAAGAC	1 cut(s)	1272
BpmI	CTGGAG	1 cut(s)	37
Bpu10I	CCTNAGC	3 cut(s)	324, 902, 1443
Bpu14I	TTCGAA	1 cut(s)	11
BpuEI	CTTGAG	2 cut(s)	279, 1307
BpuMI	CCSGG	1 cut(s)	44
BsaAI	YACGTR	1 cut(s)	599
BsaJI	CCNNGG	2 cut(s)	136, 177
BsaWI	WCCGGW	2 cut(s)	357, 1432
Bsc4I	CCNNNNNNNGG	1 cut(s)	1444
Bse1I	ACTGG	3 cut(s)	20, 143, 198
Bse3DI	GCAATG	2 cut(s)	469, 609
BseBI	CCWGG	1 cut(s)	683
BseDI	CCNNGG	2 cut(s)	136, 177
BseGI	GGATG	6 cut(s)	394, 715, 811, 1015, 1048, 1069
BseLI	CCNNNNNNNGG	1 cut(s)	1444
BseMI	GCAATG	2 cut(s)	469, 609
BseMII	CTCAG	5 cut(s)	36, 50, 474, 543, 1344
BseNI	ACTGG	3 cut(s)	20, 143, 198
BseRI	GAGGAG	1 cut(s)	569
BseXI	GCAGC	5 cut(s)	607, 880, 883, 1571, 1580
BsgI	GTGCAG	1 cut(s)	1226
BshFI	GGCC	4 cut(s)	210, 316, 671, 776
BsiHKAI	GWGCWC	2 cut(s)	23, 479
BsiSI	CCGG	3 cut(s)	44, 358, 1433
BslFI	GGGAC	2 cut(s)	163, 1421
BslI	CCNNNNNNNGG	1 cut(s)	1444
BsmAI	GTCTC	1 cut(s)	1041
BsmFI	GGGAC	2 cut(s)	163, 1421
BsmI	GAATGC	1 cut(s)	540
BsnI	GGCC	4 cut(s)	210, 316, 671, 776
Bsp119I	TTCGAA	1 cut(s)	11
Bsp1286I	GDGCHC	3 cut(s)	23, 222, 479
BspACI	CCGC	3 cut(s)	386, 439, 1528
BspANI	GGCC	4 cut(s)	210, 316, 671, 776
BspCNI	CTCAG	5 cut(s)	35, 49, 475, 544, 1345
BspHI	TCATGA	1 cut(s)	1105
BspLI	GGNNCC	3 cut(s)	742, 1380, 1437
BspMAI	CTGCAG	3 cut(s)	420, 448, 1570
BspPI	GGATC	7 cut(s)	34, 241, 325, 365, 432, 512, 843
BspQI	GCTCTTC	2 cut(s)	483, 960
BspT104I	TTCGAA	1 cut(s)	11
BsrDI	GCAATG	2 cut(s)	469, 609
BsrI	ACTGG	3 cut(s)	20, 143, 198
BssECI	CCNNGG	2 cut(s)	136, 177
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	683
Bst4CI	ACNGT	3 cut(s)	154, 1258, 1307
Bst6I	CTCTTC	4 cut(s)	58, 483, 960, 1529
BstAPI	GCANNNNNTGC	2 cut(s)	452, 1565
BstBAI	YACGTR	1 cut(s)	599
BstBI	TTCGAA	1 cut(s)	11
BstC8I	GCNNGC	2 cut(s)	318, 515
BstDEI	CTNAG	8 cut(s)	22, 36, 324, 483, 552, 902, 1353, 1443
BstF5I	GGATG	6 cut(s)	394, 715, 811, 1015, 1048, 1069
BstMAI	GTCTC	1 cut(s)	1041
BstNI	CCWGG	1 cut(s)	683
BstPAI	GACNNNNGTC	1 cut(s)	73
BstSCI	CCNGG	2 cut(s)	42, 681
BstSFI	CTRYAG	4 cut(s)	416, 444, 1257, 1566
BstV1I	GCAGC	5 cut(s)	607, 880, 883, 1571, 1580
BstV2I	GAAGAC	1 cut(s)	1272
BstX2I	RGATCY	4 cut(s)	39, 330, 424, 1178
BstYI	RGATCY	4 cut(s)	39, 330, 424, 1178
BsuRI	GGCC	4 cut(s)	210, 316, 671, 776
BtsCI	GGATG	6 cut(s)	394, 715, 811, 1015, 1048, 1069
BtsI	GCAGTG	2 cut(s)	441, 1245
BtsIMutI	CAGTG	3 cut(s)	441, 654, 1245
Cac8I	GCNNGC	2 cut(s)	318, 515
CaiI	CAGNNNCTG	1 cut(s)	1565
CciI	TCATGA	1 cut(s)	1105
Cfr13I	GGNCC	6 cut(s)	133, 140, 670, 741, 1435, 1496
CsiI	ACCWGGT	1 cut(s)	681
Csp6I	GTAC	3 cut(s)	281, 626, 1553
CviAII	CATG	5 cut(s)	239, 452, 533, 977, 1106
CviQI	GTAC	3 cut(s)	281, 626, 1553
DdeI	CTNAG	8 cut(s)	22, 36, 324, 483, 552, 902, 1353, 1443
DraIII	CACNNNGTG	1 cut(s)	242
Eam1104I	CTCTTC	4 cut(s)	58, 483, 960, 1529
EarI	CTCTTC	4 cut(s)	58, 483, 960, 1529
Ecl136II	GAGCTC	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	177
Eco24I	GRGCYC	2 cut(s)	23, 222
Eco47I	GGWCC	5 cut(s)	133, 140, 741, 1435, 1496
Eco53kI	GAGCTC	1 cut(s)	21
Eco57I	CTGAAG	2 cut(s)	833, 1544
Eco72I	CACGTG	1 cut(s)	599
EcoICRI	GAGCTC	1 cut(s)	21
EcoO109I	RGGNCCY	1 cut(s)	670
EcoRI	GAATTC	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	681
EcoT14I	CCWWGG	1 cut(s)	177
EcoT38I	GRGCYC	2 cut(s)	23, 222
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	5 cut(s)	242, 455, 536, 980, 1109
FalI	AAGNNNNNCTT	2 cut(s)	657, 689
FaqI	GGGAC	2 cut(s)	163, 1421
FatI	CATG	5 cut(s)	238, 451, 532, 976, 1105
FauNDI	CATATG	2 cut(s)	364, 657
FbaI	TGATCA	1 cut(s)	877
FblI	GTMKAC	1 cut(s)	1260
Fnu4HI	GCNGC	5 cut(s)	621, 869, 872, 1560, 1569
FokI	GGATG	6 cut(s)	401, 722, 818, 1022, 1055, 1076
FriOI	GRGCYC	2 cut(s)	23, 222
Fsp4HI	GCNGC	5 cut(s)	621, 869, 872, 1560, 1569
FspBI	CTAG	1 cut(s)	1592
GluI	GCNGC	5 cut(s)	621, 869, 872, 1560, 1569
GsuI	CTGGAG	1 cut(s)	37
HaeIII	GGCC	4 cut(s)	210, 316, 671, 776
HapII	CCGG	3 cut(s)	44, 358, 1433
Hin1II	CATG	5 cut(s)	242, 455, 536, 980, 1109
HinfI	GANTC	5 cut(s)	8, 637, 644, 1133, 1502
HpaII	CCGG	3 cut(s)	44, 358, 1433
HphI	GGTGA	2 cut(s)	254, 713
Hpy166II	GTNNAC	2 cut(s)	1116, 1261
Hpy188I	TCNGA	9 cut(s)	25, 39, 137, 484, 504, 553, 1218, 1512, 1619
Hpy8I	GTNNAC	2 cut(s)	1116, 1261
HpyCH4III	ACNGT	3 cut(s)	154, 1258, 1307
HpyCH4IV	ACGT	1 cut(s)	598
HpyF3I	CTNAG	8 cut(s)	22, 36, 324, 483, 552, 902, 1353, 1443
HpySE526I	ACGT	1 cut(s)	598
Hsp92II	CATG	5 cut(s)	242, 455, 536, 980, 1109
Ksp22I	TGATCA	1 cut(s)	877
LguI	GCTCTTC	2 cut(s)	483, 960
LmnI	GCTCC	4 cut(s)	18, 441, 1189, 1567
Lsp1109I	GCAGC	5 cut(s)	607, 880, 883, 1571, 1580
LweI	GCATC	3 cut(s)	289, 487, 754
MabI	ACCWGGT	1 cut(s)	681
MaeI	CTAG	1 cut(s)	1592
MaeII	ACGT	1 cut(s)	598
MaeIII	GTNAC	2 cut(s)	820, 1601
MfeI	CAATTG	2 cut(s)	1052, 1383
MflI	RGATCY	4 cut(s)	39, 330, 424, 1178
MhlI	GDGCHC	3 cut(s)	23, 222, 479
MlyI	GAGTC	2 cut(s)	1142, 1496
MseI	TTAA	5 cut(s)	399, 570, 687, 771, 954
MslI	CAYNNNNRTG	2 cut(s)	243, 799
MspI	CCGG	3 cut(s)	44, 358, 1433
MspR9I	CCNGG	2 cut(s)	44, 683
MunI	CAATTG	2 cut(s)	1052, 1383
Mva1269I	GAATGC	1 cut(s)	540
MvaI	CCWGG	1 cut(s)	683
NciI	CCSGG	1 cut(s)	44
NdeI	CATATG	2 cut(s)	364, 657
NlaIII	CATG	5 cut(s)	242, 455, 536, 980, 1109
NlaIV	GGNNCC	3 cut(s)	742, 1380, 1437
NspV	TTCGAA	1 cut(s)	11
PagI	TCATGA	1 cut(s)	1105
PciSI	GCTCTTC	2 cut(s)	483, 960
PctI	GAATGC	1 cut(s)	540
PfeI	GAWTC	3 cut(s)	8, 637, 644
PfoI	TCCNGGA	1 cut(s)	42
PkrI	GCNGC	5 cut(s)	622, 870, 873, 1561, 1570
PleI	GAGTC	2 cut(s)	1141, 1496
PmaCI	CACGTG	1 cut(s)	599
PmlI	CACGTG	1 cut(s)	599
PpsI	GAGTC	2 cut(s)	1141, 1496
Ppu21I	YACGTR	1 cut(s)	599
PshAI	GACNNNNGTC	1 cut(s)	73
Psp124BI	GAGCTC	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	681
PspCI	CACGTG	1 cut(s)	599
PspGI	CCWGG	1 cut(s)	681
PspN4I	GGNNCC	3 cut(s)	742, 1380, 1437
PspPI	GGNCC	6 cut(s)	133, 140, 670, 741, 1435, 1496
PstI	CTGCAG	3 cut(s)	420, 448, 1570
PstNI	CAGNNNCTG	1 cut(s)	1565
PsuI	RGATCY	4 cut(s)	39, 330, 424, 1178
RsaI	GTAC	3 cut(s)	282, 627, 1554
RsaNI	GTAC	3 cut(s)	281, 626, 1553
RseI	CAYNNNNRTG	2 cut(s)	243, 799
SacI	GAGCTC	1 cut(s)	23
SapI	GCTCTTC	2 cut(s)	483, 960
SaqAI	TTAA	5 cut(s)	399, 570, 687, 771, 954
SatI	GCNGC	5 cut(s)	621, 869, 872, 1560, 1569
Sau96I	GGNCC	6 cut(s)	133, 140, 670, 741, 1435, 1496
SchI	GAGTC	2 cut(s)	1142, 1496
ScrFI	CCNGG	2 cut(s)	44, 683
SduI	GDGCHC	3 cut(s)	23, 222, 479
SexAI	ACCWGGT	1 cut(s)	681
SfaNI	GCATC	3 cut(s)	289, 487, 754
SfcI	CTRYAG	4 cut(s)	416, 444, 1257, 1566
SfuI	TTCGAA	1 cut(s)	11
SinI	GGWCC	5 cut(s)	133, 140, 741, 1435, 1496
SmiMI	CAYNNNNRTG	2 cut(s)	243, 799
SmlI	CTYRAG	2 cut(s)	294, 1286
SmoI	CTYRAG	2 cut(s)	294, 1286
SsiI	CCGC	3 cut(s)	386, 439, 1528
SspMI	CTAG	1 cut(s)	1592
SstI	GAGCTC	1 cut(s)	23
StyD4I	CCNGG	2 cut(s)	42, 681
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	3 cut(s)	154, 1258, 1307
TaiI	ACGT	1 cut(s)	601
TaqI	TCGA	2 cut(s)	11, 51
TatI	WGTACW	1 cut(s)	280
TfiI	GAWTC	3 cut(s)	8, 637, 644
Tru1I	TTAA	5 cut(s)	399, 570, 687, 771, 954
Tru9I	TTAA	5 cut(s)	399, 570, 687, 771, 954
TscAI	CASTG	3 cut(s)	448, 654, 1245
TseI	GCWGC	5 cut(s)	620, 868, 871, 1559, 1568
TspDTI	ATGAA	8 cut(s)	261, 644, 783, 1026, 1094, 1101, 1122, 1431
TspGWI	ACGGA	2 cut(s)	20, 1391
TspRI	CASTG	3 cut(s)	448, 654, 1245
VpaK11BI	GGWCC	5 cut(s)	133, 140, 741, 1435, 1496
XapI	RAATTY	7 cut(s)	169, 227, 395, 747, 789, 1026, 1391
XmiI	GTMKAC	1 cut(s)	1260
XspI	CTAG	1 cut(s)	1592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.