Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001933

Physical Location & Seq

Genomic Coordinates Reverse (-)

18542941 .. 18544516

Gene Structure 1576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g25650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTTCAACAACGCCGGCATCGCCGACGAGGCCAAGCCGAGCATCCTCGACAATGACAAGGCCGAGTTCGAGAAGGTCCTGAGAGTGAACCTGGTTGGTGTGTCGTTAGGGACAAAGCACGCGGCTCGAGTGATGATGGGAGCTCAAAGAAGGAACATTATCAACACTGCAAGCATTTGCTCAGTCGTAGGGGGCGGCGCCACGCATGCCTACACGAGTTCGAAGAATGGAGTGGTGGGGCTCACCAAAAACACCGCGGTGGAGCTCGGACAGAGCGACGGCCAAGGGCTGAAGGACGACGGGCGGCGAGAGCGACCGGCAAGAGCGACGGCCAAGGGCCAGTCTACGATGGGCAAAGGATTTGGGGCTTTGGGCGTGGCTGTGACTCCGCCCCTGATGGTGGCGACGCCGTTGACCAAGGACTTCTTTAAGCTGGAAGACGGGAGTATCCGTGAGGTGTACTCCAACCTCAAAGGGGCGGTGCTGACGGCGGAAGATGTGGCGGAGGCTGTACTTTACTTGGGGAGTGATGAGTCCAAGTATGTTAGTGGGCATAATCTGGTAGTAGACGGAGGCTATACTATTGTCAACCCATCCCGGGTTTTCAATGAGCGATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

207

Amino Acids

21.69

Weight (kDa)

8.63

Isoelectric Point (pI)

24.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short_C2	PF13561	1 - 91	1.1e-16	Enoyl-(Acyl carrier protein) reductase
adh_short	PF00106	1 - 91	9.7e-18	short chain dehydrogenase
adh_short_C2	PF13561	133 - 194	1.1e-09	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23771 FvH4_3g25650 FvH4_3g25660
malus_domestica	MD11G1171900.v1.1 MD11G1172300.v1.1 MD12G1032600.v1.1
prunus_persica	Prupe.6G138400_v2.0.a1 Prupe.6G138600_v2.0.a1 Prupe.6G138700_v2.0.a1 Prupe.6G138800_v2.0.a1
pyrus_communis	pycom11g14280 pycom11g14340 pycom11g14350 pycom11g14410
rosa_chinensis	RchiOBHm_Chr5g0047121 RchiOBHm_Chr5g0047151
rosa_laevigata	RLG00000034467 RLG00000034469 RLG00000034471 RLG00000034472 RLG00000034473
rosa_multiflora	Rmu_co8232047.1_g000001 Rmu_co8263687.1_g000001 Rmu_sc0001565.1_g000029 Rmu_sc0003154.1_g000029 Rmu_sc0005145.1_g000014 Rmu_sc0019535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034260 Rroxscaffold_1G00034290 Rroxscaffold_1G00034310
rosa_rugosa	Rorug05G0234100 Rorug05G0234200 Rorug05G0234400 Rorug05G0234500 Rorug05G0234700
rosa_samantha	Rh5AG313100 Rh5AG313200 Rh5BG322100 Rh5CG348500 Rh5CG348600 Rh5CG348700 Rh5CG348900 Rh5CG349100 Rh5DG333100 Rh5DG333200
rosa_wichuraiana	Rw5G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	197
AccI	GTMKAC	2 cut(s)	344, 567
AccII	CGCG	2 cut(s)	122, 257
AciI	CCGC	9 cut(s)	122, 195, 255, 257, 304, 389, 479, 491, 503
AcoI	YGGCCR	2 cut(s)	280, 330
AcuI	CTGAAG	1 cut(s)	311
AcyI	GRCGYC	2 cut(s)	198, 407
AfaI	GTAC	2 cut(s)	461, 513
AfiI	CCNNNNNNNGG	3 cut(s)	400, 475, 598
AgsI	TTSAA	2 cut(s)	7, 607
AjnI	CCWGG	1 cut(s)	90
AleI	CACNNNNGTG	1 cut(s)	257
AluBI	AGCT	3 cut(s)	143, 265, 433
AluI	AGCT	3 cut(s)	143, 265, 433
Alw21I	GWGCWC	2 cut(s)	145, 267
Ama87I	CYCGRG	2 cut(s)	126, 597
AoxI	GGCC	5 cut(s)	30, 60, 280, 330, 337
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	2 cut(s)	76, 337
AsuC2I	CCSGG	2 cut(s)	598, 599
AsuHPI	GGTGA	1 cut(s)	235
AsuII	TTCGAA	1 cut(s)	221
AvaI	CYCGRG	2 cut(s)	126, 597
AvaII	GGWCC	1 cut(s)	76
BaeI	ACNNNNGTAYC	2 cut(s)	430, 463
BanI	GGYRCC	1 cut(s)	197
BanII	GRGCYC	3 cut(s)	145, 243, 267
BauI	CACGAG	1 cut(s)	214
BbsI	GAAGAC	1 cut(s)	444
Bbv12I	GWGCWC	2 cut(s)	145, 267
BccI	CCATC	4 cut(s)	130, 343, 391, 601
BceAI	ACGGC	4 cut(s)	295, 345, 394, 504
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BciT130I	CCWGG	1 cut(s)	92
BciVI	GTATCC	1 cut(s)	458
BcnI	CCSGG	2 cut(s)	598, 599
BfoI	RGCGCY	1 cut(s)	201
BfuI	GTATCC	1 cut(s)	458
BglI	GCCNNNNNGGC	1 cut(s)	29
BisI	GCNGC	3 cut(s)	123, 196, 305
BlsI	GCNGC	3 cut(s)	124, 197, 306
Bme1390I	CCNGG	3 cut(s)	92, 598, 599
Bme18I	GGWCC	1 cut(s)	76
BmeT110I	CYCGRG	2 cut(s)	126, 597
BmgT120I	GGNCC	2 cut(s)	76, 337
BmiI	GGNNCC	1 cut(s)	199
BmrFI	CCNGG	3 cut(s)	92, 598, 599
BmsI	GCATC	2 cut(s)	27, 51
BpiI	GAAGAC	1 cut(s)	444
BplI	GAGNNNNNCTC	2 cut(s)	446, 478
Bpu14I	TTCGAA	1 cut(s)	221
BpuMI	CCSGG	2 cut(s)	598, 599
BsaHI	GRCGYC	2 cut(s)	198, 407
BsaJI	CCNNGG	5 cut(s)	255, 283, 333, 417, 597
BsaXI	ACNNNNNCTCC	2 cut(s)	436, 466
Bsc4I	CCNNNNNNNGG	3 cut(s)	400, 475, 598
Bse118I	RCCGGY	2 cut(s)	14, 316
Bse1I	ACTGG	1 cut(s)	340
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	5 cut(s)	255, 283, 333, 417, 597
BseGI	GGATG	2 cut(s)	42, 593
BseLI	CCNNNNNNNGG	3 cut(s)	400, 475, 598
BseMII	CTCAG	2 cut(s)	71, 195
BseNI	ACTGG	1 cut(s)	340
Bsh1236I	CGCG	2 cut(s)	122, 257
Bsh1285I	CGRYCG	1 cut(s)	317
BshFI	GGCC	5 cut(s)	32, 62, 282, 332, 339
BshNI	GGYRCC	1 cut(s)	197
BsiEI	CGRYCG	1 cut(s)	317
BsiHKAI	GWGCWC	2 cut(s)	145, 267
BsiHKCI	CYCGRG	2 cut(s)	126, 597
BsiSI	CCGG	3 cut(s)	15, 317, 598
BslFI	GGGAC	1 cut(s)	124
BslI	CCNNNNNNNGG	3 cut(s)	400, 475, 598
BsmFI	GGGAC	1 cut(s)	124
BsnI	GGCC	5 cut(s)	32, 62, 282, 332, 339
BsoBI	CYCGRG	2 cut(s)	126, 597
Bsp119I	TTCGAA	1 cut(s)	221
Bsp1286I	GDGCHC	3 cut(s)	145, 243, 267
Bsp143I	GATC	1 cut(s)	614
BspACI	CCGC	9 cut(s)	122, 195, 255, 257, 304, 389, 479, 491, 503
BspANI	GGCC	5 cut(s)	32, 62, 282, 332, 339
BspCNI	CTCAG	2 cut(s)	72, 194
BspFNI	CGCG	2 cut(s)	122, 257
BspLI	GGNNCC	1 cut(s)	199
BspT104I	TTCGAA	1 cut(s)	221
BspT107I	GGYRCC	1 cut(s)	197
BsrFI	RCCGGY	2 cut(s)	14, 316
BsrI	ACTGG	1 cut(s)	340
BssAI	RCCGGY	2 cut(s)	14, 316
BssECI	CCNNGG	5 cut(s)	255, 283, 333, 417, 597
BssMI	GATC	1 cut(s)	614
BssNI	GRCGYC	2 cut(s)	198, 407
BssSI	CACGAG	1 cut(s)	214
BssT1I	CCWWGG	3 cut(s)	283, 333, 417
Bst2BI	CACGAG	1 cut(s)	214
Bst2UI	CCWGG	1 cut(s)	92
BstACI	GRCGYC	2 cut(s)	198, 407
BstBI	TTCGAA	1 cut(s)	221
BstC8I	GCNNGC	4 cut(s)	16, 120, 172, 207
BstDEI	CTNAG	2 cut(s)	80, 181
BstDSI	CCRYGG	1 cut(s)	255
BstF5I	GGATG	2 cut(s)	42, 593
BstFNI	CGCG	2 cut(s)	122, 257
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	1 cut(s)	617
BstMBI	GATC	1 cut(s)	614
BstMCI	CGRYCG	1 cut(s)	317
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 29, 206, 310
BstNI	CCWGG	1 cut(s)	92
BstNSI	RCATGY	1 cut(s)	209
BstSCI	CCNGG	3 cut(s)	90, 596, 597
BstUI	CGCG	2 cut(s)	122, 257
BstV2I	GAAGAC	1 cut(s)	444
BsuI	GTATCC	1 cut(s)	458
BsuRI	GGCC	5 cut(s)	32, 62, 282, 332, 339
BtgI	CCRYGG	1 cut(s)	255
BtgZI	GCGATG	1 cut(s)	4
BtsCI	GGATG	2 cut(s)	42, 593
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	1 cut(s)	165
Cac8I	GCNNGC	4 cut(s)	16, 120, 172, 207
CfoI	GCGC	1 cut(s)	200
Cfr10I	RCCGGY	2 cut(s)	14, 316
Cfr13I	GGNCC	2 cut(s)	76, 337
Cfr42I	CCGCGG	1 cut(s)	258
Cfr9I	CCCGGG	1 cut(s)	597
CseI	GACGC	1 cut(s)	415
CsiI	ACCWGGT	1 cut(s)	90
Csp6I	GTAC	2 cut(s)	460, 512
CviAII	CATG	1 cut(s)	206
CviQI	GTAC	2 cut(s)	460, 512
DdeI	CTNAG	2 cut(s)	80, 181
DinI	GGCGCC	1 cut(s)	199
DpnI	GATC	1 cut(s)	616
DpnII	GATC	1 cut(s)	614
EaeI	YGGCCR	2 cut(s)	280, 330
EciI	GGCGGA	3 cut(s)	378, 506, 518
Ecl136II	GAGCTC	2 cut(s)	143, 265
Eco130I	CCWWGG	3 cut(s)	283, 333, 417
Eco24I	GRGCYC	3 cut(s)	145, 243, 267
Eco47I	GGWCC	1 cut(s)	76
Eco53kI	GAGCTC	2 cut(s)	143, 265
Eco57I	CTGAAG	1 cut(s)	311
Eco88I	CYCGRG	2 cut(s)	126, 597
EcoICRI	GAGCTC	2 cut(s)	143, 265
EcoO109I	RGGNCCY	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	90
EcoT14I	CCWWGG	3 cut(s)	283, 333, 417
EcoT38I	GRGCYC	3 cut(s)	145, 243, 267
EgeI	GGCGCC	1 cut(s)	199
EheI	GGCGCC	1 cut(s)	199
ErhI	CCWWGG	3 cut(s)	283, 333, 417
FaeI	CATG	1 cut(s)	209
FaiI	YATR	4 cut(s)	207, 543, 555, 579
FalI	AAGNNNNNCTT	2 cut(s)	410, 442
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	1 cut(s)	205
FblI	GTMKAC	2 cut(s)	344, 567
Fnu4HI	GCNGC	3 cut(s)	123, 196, 305
FokI	GGATG	2 cut(s)	29, 580
FriOI	GRGCYC	3 cut(s)	145, 243, 267
Fsp4HI	GCNGC	3 cut(s)	123, 196, 305
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	3 cut(s)	123, 196, 305
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	5 cut(s)	32, 62, 282, 332, 339
HapII	CCGG	3 cut(s)	15, 317, 598
HgaI	GACGC	1 cut(s)	415
HhaI	GCGC	1 cut(s)	200
Hin1I	GRCGYC	2 cut(s)	198, 407
Hin1II	CATG	1 cut(s)	209
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HincII	GTYRAC	2 cut(s)	414, 589
HindII	GTYRAC	2 cut(s)	414, 589
HinfI	GANTC	2 cut(s)	385, 533
HpaII	CCGG	3 cut(s)	15, 317, 598
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	6 cut(s)	88, 345, 414, 460, 568, 589
Hpy188I	TCNGA	1 cut(s)	269
Hpy188III	TCNNGA	2 cut(s)	70, 79
Hpy8I	GTNNAC	6 cut(s)	88, 345, 414, 460, 568, 589
Hpy99I	CGWCG	5 cut(s)	29, 281, 302, 331, 409
HpyAV	CCTTC	3 cut(s)	67, 144, 286
HpyCH4V	TGCA	1 cut(s)	170
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 29, 206, 310
HpyF3I	CTNAG	2 cut(s)	80, 181
Hsp92I	GRCGYC	2 cut(s)	198, 407
Hsp92II	CATG	1 cut(s)	209
HspAI	GCGC	1 cut(s)	198
KasI	GGCGCC	1 cut(s)	197
KroI	GCCGGC	1 cut(s)	14
KroNI	GCCGGC	1 cut(s)	16
KspI	CCGCGG	1 cut(s)	258
Kzo9I	GATC	1 cut(s)	614
LmnI	GCTCC	2 cut(s)	140, 262
LweI	GCATC	2 cut(s)	27, 51
MabI	ACCWGGT	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	1 cut(s)	616
MboI	GATC	1 cut(s)	614
MboII	GAAGA	3 cut(s)	235, 449, 506
MhlI	GDGCHC	3 cut(s)	145, 243, 267
Mly113I	GGCGCC	1 cut(s)	198
MlyI	GAGTC	2 cut(s)	379, 542
MmeI	TCCRAC	1 cut(s)	489
MnlI	CCTC	6 cut(s)	22, 56, 448, 479, 499, 566
MroNI	GCCGGC	1 cut(s)	14
MseI	TTAA	2 cut(s)	429, 619
MslI	CAYNNNNRTG	1 cut(s)	257
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	3 cut(s)	15, 317, 598
MspR9I	CCNGG	3 cut(s)	92, 598, 599
MvaI	CCWGG	1 cut(s)	92
MvnI	CGCG	2 cut(s)	122, 257
MwoI	GCNNNNNNNGC	4 cut(s)	20, 29, 206, 310
NaeI	GCCGGC	1 cut(s)	16
NarI	GGCGCC	1 cut(s)	198
NciI	CCSGG	2 cut(s)	598, 599
NdeII	GATC	1 cut(s)	614
NgoMIV	GCCGGC	1 cut(s)	14
NlaIII	CATG	1 cut(s)	209
NlaIV	GGNNCC	1 cut(s)	199
NmeAIII	GCCGAG	2 cut(s)	63, 88
NmuCI	GTSAC	1 cut(s)	382
NspI	RCATGY	1 cut(s)	209
NspV	TTCGAA	1 cut(s)	221
OliI	CACNNNNGTG	1 cut(s)	257
PaeI	GCATGC	1 cut(s)	209
PaeR7I	CTCGAG	1 cut(s)	126
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PdiI	GCCGGC	1 cut(s)	16
PkrI	GCNGC	3 cut(s)	124, 197, 306
PleI	GAGTC	2 cut(s)	379, 541
PluTI	GGCGCC	1 cut(s)	201
PpsI	GAGTC	2 cut(s)	379, 541
PpuMI	RGGWCCY	1 cut(s)	76
Psp124BI	GAGCTC	2 cut(s)	145, 267
Psp5II	RGGWCCY	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	199
PspPI	GGNCC	2 cut(s)	76, 337
PspPPI	RGGWCCY	1 cut(s)	76
PspXI	VCTCGAGB	1 cut(s)	126
RsaI	GTAC	2 cut(s)	461, 513
RsaNI	GTAC	2 cut(s)	460, 512
RseI	CAYNNNNRTG	1 cut(s)	257
SacI	GAGCTC	2 cut(s)	145, 267
SacII	CCGCGG	1 cut(s)	258
SaqAI	TTAA	2 cut(s)	429, 619
SatI	GCNGC	3 cut(s)	123, 196, 305
Sau3AI	GATC	1 cut(s)	614
Sau96I	GGNCC	2 cut(s)	76, 337
SchI	GAGTC	2 cut(s)	379, 542
ScrFI	CCNGG	3 cut(s)	92, 598, 599
SduI	GDGCHC	3 cut(s)	145, 243, 267
SetI	ASST	7 cut(s)	78, 93, 145, 267, 435, 459, 471
SexAI	ACCWGGT	1 cut(s)	90
SfaNI	GCATC	2 cut(s)	27, 51
SfoI	GGCGCC	1 cut(s)	199
Sfr274I	CTCGAG	1 cut(s)	126
Sfr303I	CCGCGG	1 cut(s)	258
SfuI	TTCGAA	1 cut(s)	221
SgrBI	CCGCGG	1 cut(s)	258
SinI	GGWCC	1 cut(s)	76
SlaI	CTCGAG	1 cut(s)	126
SmaI	CCCGGG	1 cut(s)	599
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	126
SmoI	CTYRAG	1 cut(s)	126
SphI	GCATGC	1 cut(s)	209
SsiI	CCGC	9 cut(s)	122, 195, 255, 257, 304, 389, 479, 491, 503
SspDI	GGCGCC	1 cut(s)	197
SstI	GAGCTC	2 cut(s)	145, 267
StyD4I	CCNGG	3 cut(s)	90, 596, 597
StyI	CCWWGG	3 cut(s)	283, 333, 417
TaqI	TCGA	4 cut(s)	48, 69, 127, 221
TatI	WGTACW	2 cut(s)	459, 511
TauI	GCSGC	3 cut(s)	125, 198, 307
Tru1I	TTAA	2 cut(s)	429, 619
Tru9I	TTAA	2 cut(s)	429, 619
TscAI	CASTG	1 cut(s)	172
TseFI	GTSAC	1 cut(s)	382
Tsp45I	GTSAC	1 cut(s)	382
TspGWI	ACGGA	2 cut(s)	440, 585
TspMI	CCCGGG	1 cut(s)	597
TspRI	CASTG	1 cut(s)	172
VpaK11BI	GGWCC	1 cut(s)	76
XceI	RCATGY	1 cut(s)	209
XhoI	CTCGAG	1 cut(s)	126
XmaI	CCCGGG	1 cut(s)	597
XmiI	GTMKAC	2 cut(s)	344, 567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.