RLG00000034469

KR domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001933
Physical Location & Seq
Forward (+)
43284505 .. 43285047
543 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034469

Sequence Viewer

Length: 318 bp
ATGGCGAGTTTCCCGTTACTCTTGGCTACTGTAAAAAGGCTTGAAAGTAAGGTAGCAATGATCACCAGTGGATCCAGTGGCATCGGAGAATCCACCGCCAGATTCTTCTCCAAACACGGAAATGAAAAAGAGGTTAAAAACGCAGTGAACACAGCCACCGCCAAGTATGGAAAGCTACACATCATGTTCAACAACGCCAGTATCAACGACATGGACAAGCCAAACATTCTCAACAACAATAAGGCCGATTTAGAGGATCAAGCACGCGGCTCGGGTGATGATGAGAGCTCGAAAAGGGACTATTATCAACACGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

106

Amino Acids

11.5

Weight (kDa)

7.99

Isoelectric Point (pI)

31.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 267
AciI CCGC 3 cut(s) 96, 159, 267
AclWI GGATC 3 cut(s) 66, 79, 264
AgsI TTSAA 2 cut(s) 44, 190
AluBI AGCT 2 cut(s) 175, 288
AluI AGCT 2 cut(s) 175, 288
Alw21I GWGCWC 1 cut(s) 290
AlwI GGATC 3 cut(s) 66, 79, 264
Ama87I CYCGRG 1 cut(s) 271
AoxI GGCC 1 cut(s) 243
AsuHPI GGTGA 2 cut(s) 55, 287
AvaI CYCGRG 1 cut(s) 271
BaeI ACNNNNGTAYC 2 cut(s) 184, 217
BamHI GGATCC 1 cut(s) 71
BanII GRGCYC 1 cut(s) 290
Bbv12I GWGCWC 1 cut(s) 290
BcgI CGANNNNNNTGC 2 cut(s) 252, 286
BclI TGATCA 1 cut(s) 60
BfaI CTAG 1 cut(s) 316
BisI GCNGC 1 cut(s) 268
BlsI GCNGC 1 cut(s) 269
BmeT110I CYCGRG 1 cut(s) 271
BmiI GGNNCC 1 cut(s) 73
BmsI GCATC 1 cut(s) 90
Bse1I ACTGG 3 cut(s) 66, 75, 198
Bse3DI GCAATG 1 cut(s) 63
BseMI GCAATG 1 cut(s) 63
BseNI ACTGG 3 cut(s) 66, 75, 198
Bsh1236I CGCG 1 cut(s) 267
BshFI GGCC 1 cut(s) 245
BsiHKAI GWGCWC 1 cut(s) 290
BsiHKCI CYCGRG 1 cut(s) 271
BslFI GGGAC 1 cut(s) 311
BsmFI GGGAC 1 cut(s) 311
BsnI GGCC 1 cut(s) 245
BsoBI CYCGRG 1 cut(s) 271
Bsp1286I GDGCHC 1 cut(s) 290
Bsp143I GATC 3 cut(s) 60, 71, 256
BspACI CCGC 3 cut(s) 96, 159, 267
BspANI GGCC 1 cut(s) 245
BspFNI CGCG 1 cut(s) 267
BspLI GGNNCC 1 cut(s) 73
BspPI GGATC 3 cut(s) 66, 79, 264
BsrDI GCAATG 1 cut(s) 63
BsrI ACTGG 3 cut(s) 66, 75, 198
BssMI GATC 3 cut(s) 60, 71, 256
Bst4CI ACNGT 1 cut(s) 31
BstC8I GCNNGC 1 cut(s) 265
BstFNI CGCG 1 cut(s) 267
BstKTI GATC 3 cut(s) 63, 74, 259
BstMBI GATC 3 cut(s) 60, 71, 256
BstUI CGCG 1 cut(s) 267
BstX2I RGATCY 1 cut(s) 71
BstYI RGATCY 1 cut(s) 71
BsuRI GGCC 1 cut(s) 245
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 3 cut(s) 73, 82, 150
Cac8I GCNNGC 1 cut(s) 265
CviAII CATG 2 cut(s) 184, 211
CviJI RGCY 9 cut(s) 26, 40, 155, 175, 220, 245, 270, 288, 315
CviKI_1 RGCY 9 cut(s) 26, 40, 155, 175, 220, 245, 270, 288, 315
DpnI GATC 3 cut(s) 62, 73, 258
DpnII GATC 3 cut(s) 60, 71, 256
Ecl136II GAGCTC 1 cut(s) 288
Eco24I GRGCYC 1 cut(s) 290
Eco53kI GAGCTC 1 cut(s) 288
Eco88I CYCGRG 1 cut(s) 271
EcoICRI GAGCTC 1 cut(s) 288
EcoT38I GRGCYC 1 cut(s) 290
FaeI CATG 2 cut(s) 187, 214
FaiI YATR 3 cut(s) 168, 185, 212
FaqI GGGAC 1 cut(s) 311
FatI CATG 2 cut(s) 183, 210
FbaI TGATCA 1 cut(s) 60
Fnu4HI GCNGC 1 cut(s) 268
FriOI GRGCYC 1 cut(s) 290
Fsp4HI GCNGC 1 cut(s) 268
FspBI CTAG 1 cut(s) 316
GluI GCNGC 1 cut(s) 268
HaeIII GGCC 1 cut(s) 245
Hin1II CATG 2 cut(s) 187, 214
HinfI GANTC 2 cut(s) 89, 102
HphI GGTGA 2 cut(s) 55, 287
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 86
Hpy8I GTNNAC 1 cut(s) 148
HpyCH4III ACNGT 1 cut(s) 31
Hsp92II CATG 2 cut(s) 187, 214
Ksp22I TGATCA 1 cut(s) 60
Kzo9I GATC 3 cut(s) 60, 71, 256
LpnPI CCDG 4 cut(s) 79, 88, 112, 211
LweI GCATC 1 cut(s) 90
MaeI CTAG 1 cut(s) 316
MaeIII GTNAC 1 cut(s) 15
MalI GATC 3 cut(s) 62, 73, 258
MboI GATC 3 cut(s) 60, 71, 256
MboII GAAGA 1 cut(s) 97
MflI RGATCY 1 cut(s) 71
MhlI GDGCHC 1 cut(s) 290
MnlI CCTC 2 cut(s) 124, 247
MseI TTAA 1 cut(s) 135
MslI CAYNNNNRTG 1 cut(s) 120
MvnI CGCG 1 cut(s) 267
NdeII GATC 3 cut(s) 60, 71, 256
NlaIII CATG 2 cut(s) 187, 214
NlaIV GGNNCC 1 cut(s) 73
PfeI GAWTC 2 cut(s) 89, 102
PkrI GCNGC 1 cut(s) 269
Psp124BI GAGCTC 1 cut(s) 290
PspN4I GGNNCC 1 cut(s) 73
PsuI RGATCY 1 cut(s) 71
RseI CAYNNNNRTG 1 cut(s) 120
SacI GAGCTC 1 cut(s) 290
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 1 cut(s) 268
Sau3AI GATC 3 cut(s) 60, 71, 256
SduI GDGCHC 1 cut(s) 290
SetI ASST 4 cut(s) 54, 135, 177, 290
SfaNI GCATC 1 cut(s) 90
SmiMI CAYNNNNRTG 1 cut(s) 120
SsiI CCGC 3 cut(s) 96, 159, 267
SspMI CTAG 1 cut(s) 316
SstI GAGCTC 1 cut(s) 290
TaaI ACNGT 1 cut(s) 31
TaqI TCGA 1 cut(s) 290
TauI GCSGC 1 cut(s) 270
TfiI GAWTC 2 cut(s) 89, 102
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 3 cut(s) 73, 82, 150
TspDTI ATGAA 1 cut(s) 138
TspGWI ACGGA 1 cut(s) 132
TspRI CASTG 3 cut(s) 73, 82, 150
XspI CTAG 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.