Rmu_co8263687.1_g000001

KR domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8263687.1
OG0001933
Physical Location & Seq
Reverse (-)
1 .. 581
581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8263687.1_g000001.1.cds

Sequence Viewer

Length: 453 bp
atgagaaagggaaataaatctgaggtggcggctgagcttgaaggtaaggtagcagtgatcactggcggagccagtggcatcggattatccaccgctagactcttctccagacacggtgctaaagtcgtgatcgccgacgtgcaagatgacttgggccaatccgtttgtagagatctgaacccttcctccaccacgttcatccattgcaacgtgacgaacgaaaaagacgtcgaaaacgctgtgaacactgccaccgccaagtatggaaagctagacattatgtttaacaacgctggcttcagcgacttggccaagccgaacatcctcgacaacaacaaggccgatttcgaacaagtcctcggagtgaacctggttggtgtcttcttggggatcaagcacgcagctcgagtgatgatgggagttcgaaaagggactattatcaacacggctagc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

151

Amino Acids

15.96

Weight (kDa)

8.6

Isoelectric Point (pI)

15.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 231
AciI CCGC 4 cut(s) 29, 66, 93, 255
AclWI GGATC 1 cut(s) 398
AcoI YGGCCR 1 cut(s) 309
AcuI CTGAAG 1 cut(s) 283
AcyI GRCGYC 1 cut(s) 228
AgsI TTSAA 1 cut(s) 41
AjiI CACGTC 1 cut(s) 139
AjnI CCWGG 1 cut(s) 369
AloI GAACNNNNNNTCC 2 cut(s) 170, 202
AluBI AGCT 3 cut(s) 37, 271, 404
AluI AGCT 3 cut(s) 37, 271, 404
AlwI GGATC 1 cut(s) 398
Ama87I CYCGRG 1 cut(s) 405
AoxI GGCC 3 cut(s) 154, 309, 339
ApeKI GCWGC 1 cut(s) 401
ArsI GACNNNNNNTTYG 2 cut(s) 213, 245
AspS9I GGNCC 1 cut(s) 154
AsuII TTCGAA 2 cut(s) 348, 424
AsuNHI GCTAGC 1 cut(s) 449
AvaI CYCGRG 1 cut(s) 405
BalI TGGCCA 1 cut(s) 311
BbsI GAAGAC 1 cut(s) 373
BbvI GCAGC 1 cut(s) 413
BccI CCATC 1 cut(s) 409
BcgI CGANNNNNNTGC 2 cut(s) 386, 420
BciT130I CCWGG 1 cut(s) 371
BclI TGATCA 1 cut(s) 57
BfaI CTAG 3 cut(s) 96, 272, 450
BglII AGATCT 1 cut(s) 172
BisI GCNGC 2 cut(s) 30, 402
BlpI GCTNAGC 1 cut(s) 33
BlsI GCNGC 2 cut(s) 31, 403
Bme1390I CCNGG 1 cut(s) 371
BmeT110I CYCGRG 1 cut(s) 405
BmgBI CACGTC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 70
BmrFI CCNGG 1 cut(s) 371
BmsI GCATC 1 cut(s) 87
BmtI GCTAGC 1 cut(s) 453
BpiI GAAGAC 1 cut(s) 373
BpmI CTGGAG 1 cut(s) 91
Bpu1102I GCTNAGC 1 cut(s) 33
Bpu14I TTCGAA 2 cut(s) 348, 424
BsaHI GRCGYC 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 358
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bse1I ACTGG 2 cut(s) 67, 72
Bse3DI GCAATG 1 cut(s) 202
BseBI CCWGG 1 cut(s) 371
BseDI CCNNGG 1 cut(s) 358
BseGI GGATG 2 cut(s) 198, 321
BseMI GCAATG 1 cut(s) 202
BseMII CTCAG 2 cut(s) 12, 24
BseNI ACTGG 2 cut(s) 67, 72
BseXI GCAGC 1 cut(s) 413
BshFI GGCC 3 cut(s) 156, 311, 341
BsiHKCI CYCGRG 1 cut(s) 405
BslFI GGGAC 1 cut(s) 445
BsmFI GGGAC 1 cut(s) 445
BsnI GGCC 3 cut(s) 156, 311, 341
BsoBI CYCGRG 1 cut(s) 405
Bsp119I TTCGAA 2 cut(s) 348, 424
Bsp143I GATC 4 cut(s) 57, 129, 172, 390
Bsp1720I GCTNAGC 1 cut(s) 33
BspACI CCGC 4 cut(s) 29, 66, 93, 255
BspANI GGCC 3 cut(s) 156, 311, 341
BspCNI CTCAG 2 cut(s) 13, 25
BspLI GGNNCC 1 cut(s) 70
BspOI GCTAGC 1 cut(s) 453
BspPI GGATC 1 cut(s) 398
BspT104I TTCGAA 2 cut(s) 348, 424
BsrDI GCAATG 1 cut(s) 202
BsrI ACTGG 2 cut(s) 67, 72
BssECI CCNNGG 1 cut(s) 358
BssMI GATC 4 cut(s) 57, 129, 172, 390
BssNI GRCGYC 1 cut(s) 228
Bst2UI CCWGG 1 cut(s) 371
Bst4CI ACNGT 1 cut(s) 116
Bst6I CTCTTC 1 cut(s) 107
BstACI GRCGYC 1 cut(s) 228
BstBI TTCGAA 2 cut(s) 348, 424
BstC8I GCNNGC 3 cut(s) 295, 399, 451
BstDEI CTNAG 2 cut(s) 21, 33
BstF5I GGATG 2 cut(s) 198, 321
BstKTI GATC 4 cut(s) 60, 132, 175, 393
BstMBI GATC 4 cut(s) 57, 129, 172, 390
BstNI CCWGG 1 cut(s) 371
BstSCI CCNGG 1 cut(s) 369
BstV1I GCAGC 1 cut(s) 413
BstV2I GAAGAC 1 cut(s) 373
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BsuRI GGCC 3 cut(s) 156, 311, 341
BtrI CACGTC 1 cut(s) 139
BtsCI GGATG 2 cut(s) 198, 321
BtsI GCAGTG 2 cut(s) 60, 246
BtsIMutI CAGTG 4 cut(s) 60, 60, 79, 246
Cac8I GCNNGC 3 cut(s) 295, 399, 451
Cfr13I GGNCC 1 cut(s) 154
CsiI ACCWGGT 1 cut(s) 369
DdeI CTNAG 2 cut(s) 21, 33
DpnI GATC 4 cut(s) 59, 131, 174, 392
DpnII GATC 4 cut(s) 57, 129, 172, 390
EaeI YGGCCR 1 cut(s) 309
Eam1104I CTCTTC 1 cut(s) 107
EarI CTCTTC 1 cut(s) 107
EciI GGCGGA 1 cut(s) 81
Eco57I CTGAAG 1 cut(s) 283
Eco88I CYCGRG 1 cut(s) 405
EcoRII CCWGG 1 cut(s) 369
FaiI YATR 2 cut(s) 264, 281
FaqI GGGAC 1 cut(s) 445
FbaI TGATCA 1 cut(s) 57
Fnu4HI GCNGC 2 cut(s) 30, 402
FokI GGATG 2 cut(s) 185, 308
Fsp4HI GCNGC 2 cut(s) 30, 402
FspBI CTAG 3 cut(s) 96, 272, 450
GluI GCNGC 2 cut(s) 30, 402
GsuI CTGGAG 1 cut(s) 91
HaeIII GGCC 3 cut(s) 156, 311, 341
Hin1I GRCGYC 1 cut(s) 228
HinfI GANTC 1 cut(s) 99
Hpy166II GTNNAC 2 cut(s) 244, 367
Hpy188I TCNGA 4 cut(s) 22, 83, 177, 362
Hpy188III TCNNGA 2 cut(s) 108, 127
Hpy8I GTNNAC 2 cut(s) 244, 367
Hpy99I CGWCG 2 cut(s) 140, 233
HpyAV CCTTC 2 cut(s) 35, 192
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4IV ACGT 4 cut(s) 138, 194, 210, 228
HpyCH4V TGCA 2 cut(s) 142, 207
HpyF3I CTNAG 2 cut(s) 21, 33
HpySE526I ACGT 4 cut(s) 138, 194, 210, 228
Hsp92I GRCGYC 1 cut(s) 228
Ksp22I TGATCA 1 cut(s) 57
Kzo9I GATC 4 cut(s) 57, 129, 172, 390
LmnI GCTCC 1 cut(s) 68
LpnPI CCDG 6 cut(s) 48, 85, 121, 279, 356, 383
Lsp1109I GCAGC 1 cut(s) 413
LweI GCATC 1 cut(s) 87
MabI ACCWGGT 1 cut(s) 369
MaeI CTAG 3 cut(s) 96, 272, 450
MaeII ACGT 4 cut(s) 138, 194, 210, 228
MaeIII GTNAC 1 cut(s) 211
MalI GATC 4 cut(s) 59, 131, 174, 392
MboI GATC 4 cut(s) 57, 129, 172, 390
MboII GAAGA 2 cut(s) 94, 373
MflI RGATCY 1 cut(s) 172
MlsI TGGCCA 1 cut(s) 311
MluNI TGGCCA 1 cut(s) 311
MlyI GAGTC 1 cut(s) 93
MnlI CCTC 4 cut(s) 16, 196, 335, 368
Mox20I TGGCCA 1 cut(s) 311
MscI TGGCCA 1 cut(s) 311
MseI TTAA 1 cut(s) 285
Msp20I TGGCCA 1 cut(s) 311
MspR9I CCNGG 1 cut(s) 371
MvaI CCWGG 1 cut(s) 371
NdeII GATC 4 cut(s) 57, 129, 172, 390
NheI GCTAGC 1 cut(s) 449
NlaIV GGNNCC 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 211
NspV TTCGAA 2 cut(s) 348, 424
PaeR7I CTCGAG 1 cut(s) 405
PcsI WCGNNNNNNNCGW 3 cut(s) 132, 216, 225
PkrI GCNGC 2 cut(s) 31, 403
PleI GAGTC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 369
PspGI CCWGG 1 cut(s) 369
PspN4I GGNNCC 1 cut(s) 70
PspPI GGNCC 1 cut(s) 154
PspXI VCTCGAGB 1 cut(s) 405
PsuI RGATCY 1 cut(s) 172
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 2 cut(s) 30, 402
Sau3AI GATC 4 cut(s) 57, 129, 172, 390
Sau96I GGNCC 1 cut(s) 154
SchI GAGTC 1 cut(s) 93
ScrFI CCNGG 1 cut(s) 371
SexAI ACCWGGT 1 cut(s) 369
SfaNI GCATC 1 cut(s) 87
Sfr274I CTCGAG 1 cut(s) 405
SfuI TTCGAA 2 cut(s) 348, 424
SlaI CTCGAG 1 cut(s) 405
SmlI CTYRAG 1 cut(s) 405
SmoI CTYRAG 1 cut(s) 405
SsiI CCGC 4 cut(s) 29, 66, 93, 255
SspMI CTAG 3 cut(s) 96, 272, 450
StyD4I CCNGG 1 cut(s) 369
TaaI ACNGT 1 cut(s) 116
TaiI ACGT 4 cut(s) 141, 197, 213, 231
TaqI TCGA 5 cut(s) 231, 327, 348, 406, 424
TauI GCSGC 1 cut(s) 32
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 4 cut(s) 60, 67, 79, 253
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 1 cut(s) 401
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 1 cut(s) 187
TspGWI ACGGA 1 cut(s) 151
TspRI CASTG 4 cut(s) 60, 67, 79, 253
XhoI CTCGAG 1 cut(s) 405
XspI CTAG 3 cut(s) 96, 272, 450
ZraI GACGTC 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.