Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001933

Physical Location & Seq

Genomic Coordinates Reverse (-)

24560796 .. 24565710

Gene Structure 4915 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0234400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGGTACGGTACTGTCAAGACCACATATATGGTATTGAGGAAGAGGACCCTAGTATATTTCTGCCCAGTCCGAACAACGCCGCCTTAAACGAGCAAGCTTTCGGGTTCGTGCTTAACCTCTTGTTGGAAACTTTAAGAGACAGAGCTACTTCTGGCGATTCTCGAAAAAAATATGCAGCAGGACATGCAGTTGCTCCGGGATACGAAACGATATATGCACTTGCGCAGTGCACTCCGGACATACACAAAGCCAATTGCAATTATTGCCTGAACGGTTGCATCTCTGCTGCTGTTCCACTATGTTGCAGTGGAAAGTCAGGAGCAAGAGTTCTTAAACCAAGTTGTAATATAAGGTTTGAGTTCGATCTTTTCTATAACTCTACAGCCGATTCAGAAGTAAATATTCCAGCTCCAGCTCCAGCTCCTGTTACTTTAACAACTCCAGTACTTCCACCTAAGCAAGGAAAGAAGAGTAACAGAAAAAGAAATATCATCATCATTTTGGTTGTGATTGCTTTTTTCAAGATGCTTCTCGGTGGCATATGCATTTTCTTTAGAGTCAAGAAACCAAGGGTAAAACTTGACGATGATATTTTTGGAGAAATTAGCCTCGTGGAATCGTTACAATATAACTTTGAAGATATAAGATCTGCAACAGATGACTTTTCTGATGAAAATAAGCTTGGACAAGGTGGATTTGGAGTTGCTTATAAGGGTAGGCTATATAACGGACGATATATAGCTGTGAAAAGACTATCTAAGAGTTTTCTCAGCAAGATGATCGTGAATTTCAAAATGAAGTCACGATTCTCGACTTCGAATTATCTGTTGGATGAAGAAATGAACCCCAAAATTGCAGATTTTGGTATGGCAAGGTTGTTTGTTATGGATCAAACTCAAGGAGATACAGGGACTATCGTTGGGACCTATGGATATATGGCACCCGAATATGCATTTCACAGGCGCCTTTATGTCAAATTGGATGTTTTTAGTTTTGGCGTGTTAGTTCTTGAGATAGTTAGCGGTAAGAAGATTGGTAGTTTCCGGAATGGTGAGGATGAAGAGAACCTTCTAAGCTACCCTTCTGCACTCCTCGAAGTTCAGCCCCTTAAGCTCCTCGTCAGACTCCTCCATCTCCGGCCACAATCCATTCCGGTCCCTGTCGTTCCCGCCCGAATCTCCCGGGTAAAGACTCCCGCCGGCCAAGAGCACGTACTCGGCTGGGGGTTTGAGTTCGCCGAGAGCGAGGTGGAGTCGGCCAGGAGCCCCGTGAAGACAGCGTTTTACGCGATTGTTGAAATGATTGAGAAATTGGATGTGAATAGTGATGGTTCTATAACTGCATTGGAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

451

Amino Acids

50.16

Weight (kDa)

7.52

Isoelectric Point (pI)

49.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	30 - 120	2.9e-10	Salt stress response/antifungal
PK_Tyr_Ser-Thr	PF07714	272 - 342	5.8e-12	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	273 - 353	8.2e-14	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23771 FvH4_3g25650 FvH4_3g25660
malus_domestica	MD11G1171900.v1.1 MD11G1172300.v1.1 MD12G1032600.v1.1
prunus_persica	Prupe.6G138400_v2.0.a1 Prupe.6G138600_v2.0.a1 Prupe.6G138700_v2.0.a1 Prupe.6G138800_v2.0.a1
pyrus_communis	pycom11g14280 pycom11g14340 pycom11g14350 pycom11g14410
rosa_chinensis	RchiOBHm_Chr5g0047121 RchiOBHm_Chr5g0047151
rosa_laevigata	RLG00000034467 RLG00000034469 RLG00000034471 RLG00000034472 RLG00000034473
rosa_multiflora	Rmu_co8232047.1_g000001 Rmu_co8263687.1_g000001 Rmu_sc0001565.1_g000029 Rmu_sc0003154.1_g000029 Rmu_sc0005145.1_g000014 Rmu_sc0019535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034260 Rroxscaffold_1G00034290 Rroxscaffold_1G00034310
rosa_rugosa	Rorug05G0234100 Rorug05G0234200 Rorug05G0234400 Rorug05G0234500 Rorug05G0234700
rosa_samantha	Rh5AG313100 Rh5AG313200 Rh5BG322100 Rh5CG348500 Rh5CG348600 Rh5CG348700 Rh5CG348900 Rh5CG349100 Rh5DG333100 Rh5DG333200
rosa_wichuraiana	Rw5G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	711
Acc16I	TGCGCA	1 cut(s)	225
AccB1I	GGYRCC	2 cut(s)	940, 963
AccII	CGCG	1 cut(s)	1289
AccIII	TCCGGA	2 cut(s)	235, 1044
AciI	CCGC	4 cut(s)	81, 1023, 1170, 1197
AclWI	GGATC	1 cut(s)	897
AcoI	YGGCCR	3 cut(s)	1139, 1201, 1257
AcsI	RAATTY	1 cut(s)	787
AcyI	GRCGYC	1 cut(s)	964
AfaI	GTAC	4 cut(s)	6, 11, 447, 1215
AfiI	CCNNNNNNNGG	2 cut(s)	124, 461
AflII	CTTAAG	1 cut(s)	1109
AgsI	TTSAA	4 cut(s)	523, 638, 793, 1298
AjnI	CCWGG	1 cut(s)	1259
AjuI	GAANNNNNNNTTGG	4 cut(s)	666, 698, 812, 844
AloI	GAACNNNNNNTCC	2 cut(s)	312, 344
AluBI	AGCT	9 cut(s)	98, 146, 410, 416, 422, 682, 743, 1077, 1114
AluI	AGCT	9 cut(s)	98, 146, 410, 416, 422, 682, 743, 1077, 1114
Alw21I	GWGCWC	2 cut(s)	233, 1212
Alw26I	GTCTC	1 cut(s)	132
Alw44I	GTGCAC	1 cut(s)	229
AlwI	GGATC	1 cut(s)	897
AlwNI	CAGNNNCTG	1 cut(s)	425
Ama87I	CYCGRG	1 cut(s)	1182
Aor13HI	TCCGGA	2 cut(s)	235, 1044
AoxI	GGCC	3 cut(s)	1139, 1201, 1257
ApaLI	GTGCAC	1 cut(s)	229
ApeKI	GCWGC	2 cut(s)	176, 287
ApoI	RAATTY	1 cut(s)	787
AspLEI	GCGC	2 cut(s)	226, 966
AspS9I	GGNCC	3 cut(s)	46, 924, 1156
AsuC2I	CCSGG	3 cut(s)	198, 1183, 1184
AsuHPI	GGTGA	1 cut(s)	1064
AsuII	TTCGAA	1 cut(s)	818
AvaI	CYCGRG	1 cut(s)	1182
AvaII	GGWCC	3 cut(s)	46, 924, 1156
BaeGI	GKGCMC	1 cut(s)	233
BanI	GGYRCC	2 cut(s)	940, 963
BanII	GRGCYC	1 cut(s)	1268
BauI	CACGAG	1 cut(s)	611
BbsI	GAAGAC	1 cut(s)	1280
Bbv12I	GWGCWC	2 cut(s)	233, 1212
BbvI	GCAGC	2 cut(s)	188, 274
BccI	CCATC	2 cut(s)	1140, 1322
BcgI	CGANNNNNNTGC	2 cut(s)	763, 797
BciT130I	CCWGG	1 cut(s)	1261
BciVI	GTATCC	1 cut(s)	194
BcnI	CCSGG	3 cut(s)	198, 1183, 1184
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	1 cut(s)	51
BfmI	CTRYAG	1 cut(s)	381
BfoI	RGCGCY	1 cut(s)	967
BfrI	CTTAAG	1 cut(s)	1109
BfuI	GTATCC	1 cut(s)	194
BglII	AGATCT	1 cut(s)	647
BisI	GCNGC	3 cut(s)	81, 177, 288
BlsI	GCNGC	3 cut(s)	82, 178, 289
BmcAI	AGTACT	1 cut(s)	447
Bme1390I	CCNGG	4 cut(s)	198, 1183, 1184, 1261
Bme18I	GGWCC	3 cut(s)	46, 924, 1156
BmeT110I	CYCGRG	1 cut(s)	1182
BmgT120I	GGNCC	3 cut(s)	46, 924, 1156
BmiI	GGNNCC	6 cut(s)	48, 925, 942, 965, 1158, 1265
BmrFI	CCNGG	4 cut(s)	198, 1183, 1184, 1261
BmrI	ACTGGG	1 cut(s)	60
BmsI	GCATC	2 cut(s)	288, 516
BmuI	ACTGGG	1 cut(s)	60
BpiI	GAAGAC	1 cut(s)	1280
BpmI	CTGGAG	3 cut(s)	396, 402, 426
Bpu10I	CCTNAGC	1 cut(s)	456
Bpu14I	TTCGAA	1 cut(s)	818
BpuEI	CTTGAG	2 cut(s)	882, 1031
BpuMI	CCSGG	3 cut(s)	198, 1183, 1184
BsaAI	YACGTR	1 cut(s)	1213
BsaHI	GRCGYC	1 cut(s)	964
BsaJI	CCNNGG	2 cut(s)	569, 1182
BsaWI	WCCGGW	3 cut(s)	235, 1044, 1153
BsaXI	ACNNNNNCTCC	2 cut(s)	312, 342
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 461
Bse118I	RCCGGY	1 cut(s)	1199
Bse1I	ACTGG	2 cut(s)	66, 443
BseAI	TCCGGA	2 cut(s)	235, 1044
BseBI	CCWGG	1 cut(s)	1261
BseDI	CCNNGG	2 cut(s)	569, 1182
BseGI	GGATG	4 cut(s)	838, 988, 1063, 1321
BseLI	CCNNNNNNNGG	2 cut(s)	124, 461
BseMII	CTCAG	1 cut(s)	784
BseNI	ACTGG	2 cut(s)	66, 443
BseRI	GAGGAG	3 cut(s)	1082, 1106, 1118
BseSI	GKGCMC	1 cut(s)	233
BseXI	GCAGC	2 cut(s)	188, 274
BseYI	CCCAGC	1 cut(s)	1221
BsgI	GTGCAG	1 cut(s)	1071
Bsh1236I	CGCG	1 cut(s)	1289
BshFI	GGCC	3 cut(s)	1141, 1203, 1259
BshNI	GGYRCC	2 cut(s)	940, 963
BsiHKAI	GWGCWC	2 cut(s)	233, 1212
BsiHKCI	CYCGRG	1 cut(s)	1182
BsiSI	CCGG	7 cut(s)	197, 236, 1045, 1138, 1154, 1183, 1200
BslFI	GGGAC	3 cut(s)	925, 937, 1142
BslI	CCNNNNNNNGG	2 cut(s)	124, 461
BsmAI	GTCTC	1 cut(s)	132
BsmFI	GGGAC	3 cut(s)	925, 937, 1142
BsnI	GGCC	3 cut(s)	1141, 1203, 1259
BsoBI	CYCGRG	1 cut(s)	1182
Bsp119I	TTCGAA	1 cut(s)	818
Bsp1286I	GDGCHC	3 cut(s)	233, 1212, 1268
Bsp13I	TCCGGA	2 cut(s)	235, 1044
Bsp143I	GATC	4 cut(s)	364, 647, 780, 889
BspACI	CCGC	4 cut(s)	81, 1023, 1170, 1197
BspANI	GGCC	3 cut(s)	1141, 1203, 1259
BspCNI	CTCAG	1 cut(s)	783
BspEI	TCCGGA	2 cut(s)	235, 1044
BspFNI	CGCG	1 cut(s)	1289
BspLI	GGNNCC	6 cut(s)	48, 925, 942, 965, 1158, 1265
BspPI	GGATC	1 cut(s)	897
BspT104I	TTCGAA	1 cut(s)	818
BspT107I	GGYRCC	2 cut(s)	940, 963
BspTI	CTTAAG	1 cut(s)	1109
BsrFI	RCCGGY	1 cut(s)	1199
BsrI	ACTGG	2 cut(s)	66, 443
BssAI	RCCGGY	1 cut(s)	1199
BssECI	CCNNGG	2 cut(s)	569, 1182
BssMI	GATC	4 cut(s)	364, 647, 780, 889
BssNI	GRCGYC	1 cut(s)	964
BssSI	CACGAG	1 cut(s)	611
BssT1I	CCWWGG	1 cut(s)	569
Bst2BI	CACGAG	1 cut(s)	611
Bst2UI	CCWGG	1 cut(s)	1261
Bst4CI	ACNGT	3 cut(s)	9, 14, 275
Bst6I	CTCTTC	3 cut(s)	36, 464, 1056
BstACI	GRCGYC	1 cut(s)	964
BstAFI	CTTAAG	1 cut(s)	1109
BstAPI	GCANNNNNTGC	2 cut(s)	185, 264
BstBAI	YACGTR	1 cut(s)	1213
BstBI	TTCGAA	1 cut(s)	818
BstC8I	GCNNGC	2 cut(s)	96, 1201
BstDEI	CTNAG	4 cut(s)	456, 759, 770, 1073
BstENI	CCTNNNNNAGG	1 cut(s)	459
BstF5I	GGATG	4 cut(s)	838, 988, 1063, 1321
BstFNI	CGCG	1 cut(s)	1289
BstH2I	RGCGCY	1 cut(s)	967
BstHHI	GCGC	2 cut(s)	226, 966
BstKTI	GATC	4 cut(s)	367, 650, 783, 892
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	4 cut(s)	364, 647, 780, 889
BstMWI	GCNNNNNNNGC	4 cut(s)	185, 264, 1111, 1286
BstNI	CCWGG	1 cut(s)	1261
BstNSI	RCATGY	1 cut(s)	188
BstSCI	CCNGG	4 cut(s)	196, 1181, 1182, 1259
BstSFI	CTRYAG	1 cut(s)	381
BstSLI	GKGCMC	1 cut(s)	233
BstUI	CGCG	1 cut(s)	1289
BstV1I	GCAGC	2 cut(s)	188, 274
BstV2I	GAAGAC	1 cut(s)	1280
BstX2I	RGATCY	1 cut(s)	647
BstXI	CCANNNNNNTGG	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	647
BsuI	GTATCC	1 cut(s)	194
BsuRI	GGCC	3 cut(s)	1141, 1203, 1259
BtsCI	GGATG	4 cut(s)	838, 988, 1063, 1321
BtsI	GCAGTG	2 cut(s)	233, 313
BtsIMutI	CAGTG	2 cut(s)	233, 313
Cac8I	GCNNGC	2 cut(s)	96, 1201
CaiI	CAGNNNCTG	1 cut(s)	425
CfoI	GCGC	2 cut(s)	226, 966
Cfr10I	RCCGGY	1 cut(s)	1199
Cfr13I	GGNCC	3 cut(s)	46, 924, 1156
Cfr9I	CCCGGG	1 cut(s)	1182
Csp6I	GTAC	4 cut(s)	5, 10, 446, 1214
CviAII	CATG	1 cut(s)	185
CviQI	GTAC	4 cut(s)	5, 10, 446, 1214
DdeI	CTNAG	4 cut(s)	456, 759, 770, 1073
DinI	GGCGCC	1 cut(s)	965
DpnI	GATC	4 cut(s)	366, 649, 782, 891
DpnII	GATC	4 cut(s)	364, 647, 780, 889
EaeI	YGGCCR	3 cut(s)	1139, 1201, 1257
Eam1104I	CTCTTC	3 cut(s)	36, 464, 1056
EarI	CTCTTC	3 cut(s)	36, 464, 1056
Eco130I	CCWWGG	1 cut(s)	569
Eco24I	GRGCYC	1 cut(s)	1268
Eco47I	GGWCC	3 cut(s)	46, 924, 1156
Eco88I	CYCGRG	1 cut(s)	1182
EcoNI	CCTNNNNNAGG	1 cut(s)	459
EcoO109I	RGGNCCY	2 cut(s)	46, 924
EcoRII	CCWGG	1 cut(s)	1259
EcoT14I	CCWWGG	1 cut(s)	569
EcoT22I	ATGCAT	2 cut(s)	548, 955
EcoT38I	GRGCYC	1 cut(s)	1268
EgeI	GGCGCC	1 cut(s)	965
EheI	GGCGCC	1 cut(s)	965
ErhI	CCWWGG	1 cut(s)	569
FaeI	CATG	1 cut(s)	188
FalI	AAGNNNNNCTT	4 cut(s)	1053, 1085, 1066, 1098
FaqI	GGGAC	3 cut(s)	925, 937, 1142
FatI	CATG	1 cut(s)	184
FauI	CCCGC	2 cut(s)	1177, 1204
FauNDI	CATATG	1 cut(s)	542
Fnu4HI	GCNGC	3 cut(s)	81, 177, 288
FokI	GGATG	4 cut(s)	845, 995, 1070, 1328
FriOI	GRGCYC	1 cut(s)	1268
Fsp4HI	GCNGC	3 cut(s)	81, 177, 288
FspBI	CTAG	1 cut(s)	51
FspI	TGCGCA	1 cut(s)	225
GlaI	GCGC	2 cut(s)	225, 965
GluI	GCNGC	3 cut(s)	81, 177, 288
GsaI	CCCAGC	1 cut(s)	1225
GsuI	CTGGAG	3 cut(s)	396, 402, 426
HaeII	RGCGCY	1 cut(s)	967
HaeIII	GGCC	3 cut(s)	1141, 1203, 1259
HapII	CCGG	7 cut(s)	197, 236, 1045, 1138, 1154, 1183, 1200
HhaI	GCGC	2 cut(s)	226, 966
Hin1I	GRCGYC	1 cut(s)	964
Hin1II	CATG	1 cut(s)	188
Hin6I	GCGC	2 cut(s)	224, 964
HinP1I	GCGC	2 cut(s)	224, 964
HindIII	AAGCTT	2 cut(s)	96, 680
HinfI	GANTC	9 cut(s)	158, 389, 558, 617, 807, 1125, 1176, 1192, 1253
HpaII	CCGG	7 cut(s)	197, 236, 1045, 1138, 1154, 1183, 1200
HphI	GGTGA	1 cut(s)	1064
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188I	TCNGA	4 cut(s)	72, 394, 670, 1124
Hpy8I	GTNNAC	1 cut(s)	231
HpyAV	CCTTC	2 cut(s)	1079, 1092
HpyCH4III	ACNGT	3 cut(s)	9, 14, 275
HpyCH4IV	ACGT	1 cut(s)	1212
HpyF10VI	GCNNNNNNNGC	4 cut(s)	185, 264, 1111, 1286
HpyF3I	CTNAG	4 cut(s)	456, 759, 770, 1073
HpySE526I	ACGT	1 cut(s)	1212
Hsp92I	GRCGYC	1 cut(s)	964
Hsp92II	CATG	1 cut(s)	188
HspAI	GCGC	2 cut(s)	224, 964
KasI	GGCGCC	1 cut(s)	963
Kpn2I	TCCGGA	2 cut(s)	235, 1044
KroI	GCCGGC	1 cut(s)	1199
KroNI	GCCGGC	1 cut(s)	1201
Kzo9I	GATC	4 cut(s)	364, 647, 780, 889
LmnI	GCTCC	7 cut(s)	199, 320, 415, 421, 427, 1119, 1263
Lsp1109I	GCAGC	2 cut(s)	188, 274
LweI	GCATC	2 cut(s)	288, 516
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	1 cut(s)	1212
MaeIII	GTNAC	4 cut(s)	427, 473, 621, 801
MalI	GATC	4 cut(s)	366, 649, 782, 891
MboI	GATC	4 cut(s)	364, 647, 780, 889
MboII	GAAGA	7 cut(s)	53, 481, 650, 848, 1042, 1073, 1285
MfeI	CAATTG	1 cut(s)	253
MflI	RGATCY	1 cut(s)	647
MhlI	GDGCHC	3 cut(s)	233, 1212, 1268
MluCI	AATT	8 cut(s)	253, 259, 603, 787, 820, 852, 977, 1310
Mly113I	GGCGCC	1 cut(s)	964
MlyI	GAGTC	4 cut(s)	567, 1119, 1186, 1262
MmeI	TCCRAC	2 cut(s)	105, 810
Mph1103I	ATGCAT	2 cut(s)	548, 955
MroI	TCCGGA	2 cut(s)	235, 1044
MroNI	GCCGGC	1 cut(s)	1199
MseI	TTAA	6 cut(s)	86, 114, 134, 333, 434, 1110
MslI	CAYNNNNRTG	1 cut(s)	27
MspCI	CTTAAG	1 cut(s)	1109
MspI	CCGG	7 cut(s)	197, 236, 1045, 1138, 1154, 1183, 1200
MspR9I	CCNGG	4 cut(s)	198, 1183, 1184, 1261
MunI	CAATTG	1 cut(s)	253
MvaI	CCWGG	1 cut(s)	1261
MvnI	CGCG	1 cut(s)	1289
MwoI	GCNNNNNNNGC	4 cut(s)	185, 264, 1111, 1286
NaeI	GCCGGC	1 cut(s)	1201
NarI	GGCGCC	1 cut(s)	964
NciI	CCSGG	3 cut(s)	198, 1183, 1184
NdeI	CATATG	1 cut(s)	542
NdeII	GATC	4 cut(s)	364, 647, 780, 889
NgoMIV	GCCGGC	1 cut(s)	1199
NlaIII	CATG	1 cut(s)	188
NlaIV	GGNNCC	6 cut(s)	48, 925, 942, 965, 1158, 1265
NmeAIII	GCCGAG	2 cut(s)	1197, 1264
NmuCI	GTSAC	1 cut(s)	801
NsbI	TGCGCA	1 cut(s)	225
NsiI	ATGCAT	2 cut(s)	548, 955
NspI	RCATGY	1 cut(s)	188
NspV	TTCGAA	1 cut(s)	818
PcsI	WCGNNNNNNNCGW	1 cut(s)	1242
PdiI	GCCGGC	1 cut(s)	1201
PfeI	GAWTC	5 cut(s)	158, 389, 617, 807, 1176
PfoI	TCCNGGA	1 cut(s)	196
PkrI	GCNGC	3 cut(s)	82, 178, 289
PleI	GAGTC	4 cut(s)	566, 1119, 1186, 1261
PluTI	GGCGCC	1 cut(s)	967
PpsI	GAGTC	4 cut(s)	566, 1119, 1186, 1261
Ppu21I	YACGTR	1 cut(s)	1213
PpuMI	RGGWCCY	2 cut(s)	46, 924
PsiI	TTATAA	1 cut(s)	711
Psp5II	RGGWCCY	2 cut(s)	46, 924
Psp6I	CCWGG	1 cut(s)	1259
PspFI	CCCAGC	1 cut(s)	1221
PspGI	CCWGG	1 cut(s)	1259
PspN4I	GGNNCC	6 cut(s)	48, 925, 942, 965, 1158, 1265
PspPI	GGNCC	3 cut(s)	46, 924, 1156
PspPPI	RGGWCCY	2 cut(s)	46, 924
PstNI	CAGNNNCTG	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	647
RsaI	GTAC	4 cut(s)	6, 11, 447, 1215
RsaNI	GTAC	4 cut(s)	5, 10, 446, 1214
RseI	CAYNNNNRTG	1 cut(s)	27
SaqAI	TTAA	6 cut(s)	86, 114, 134, 333, 434, 1110
SatI	GCNGC	3 cut(s)	81, 177, 288
Sau3AI	GATC	4 cut(s)	364, 647, 780, 889
Sau96I	GGNCC	3 cut(s)	46, 924, 1156
ScaI	AGTACT	1 cut(s)	447
SchI	GAGTC	4 cut(s)	567, 1119, 1186, 1262
ScrFI	CCNGG	4 cut(s)	198, 1183, 1184, 1261
SduI	GDGCHC	3 cut(s)	233, 1212, 1268
SfaNI	GCATC	2 cut(s)	288, 516
SfcI	CTRYAG	1 cut(s)	381
SfoI	GGCGCC	1 cut(s)	965
SfuI	TTCGAA	1 cut(s)	818
SinI	GGWCC	3 cut(s)	46, 924, 1156
SmaI	CCCGGG	1 cut(s)	1184
SmiMI	CAYNNNNRTG	1 cut(s)	27
SmlI	CTYRAG	3 cut(s)	897, 1010, 1109
SmoI	CTYRAG	3 cut(s)	897, 1010, 1109
Sse9I	AATT	8 cut(s)	253, 259, 603, 787, 820, 852, 977, 1310
SsiI	CCGC	4 cut(s)	81, 1023, 1170, 1197
SspDI	GGCGCC	1 cut(s)	963
SspI	AATATT	1 cut(s)	403
SspMI	CTAG	1 cut(s)	51
StyD4I	CCNGG	4 cut(s)	196, 1181, 1182, 1259
StyI	CCWWGG	1 cut(s)	569
TaaI	ACNGT	3 cut(s)	9, 14, 275
TaiI	ACGT	1 cut(s)	1215
TaqI	TCGA	5 cut(s)	163, 363, 812, 818, 1095
TasI	AATT	8 cut(s)	253, 259, 603, 787, 820, 852, 977, 1310
TatI	WGTACW	1 cut(s)	445
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	5 cut(s)	158, 389, 617, 807, 1176
Tru1I	TTAA	6 cut(s)	86, 114, 134, 333, 434, 1110
Tru9I	TTAA	6 cut(s)	86, 114, 134, 333, 434, 1110
TscAI	CASTG	2 cut(s)	233, 313
TseFI	GTSAC	1 cut(s)	801
TseI	GCWGC	2 cut(s)	176, 287
Tsp45I	GTSAC	1 cut(s)	801
TspDTI	ATGAA	5 cut(s)	687, 812, 849, 857, 1074
TspGWI	ACGGA	1 cut(s)	744
TspMI	CCCGGG	1 cut(s)	1182
TspRI	CASTG	2 cut(s)	233, 313
Vha464I	CTTAAG	1 cut(s)	1109
VneI	GTGCAC	1 cut(s)	229
VpaK11BI	GGWCC	3 cut(s)	46, 924, 1156
XagI	CCTNNNNNAGG	1 cut(s)	459
XapI	RAATTY	1 cut(s)	787
XceI	RCATGY	1 cut(s)	188
XmaI	CCCGGG	1 cut(s)	1182
XspI	CTAG	1 cut(s)	51
ZrmI	AGTACT	1 cut(s)	447
Zsp2I	ATGCAT	2 cut(s)	548, 955

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.