Rroxscaffold_1G00034260

Secoisolariciresinol dehydrogenase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001933
Physical Location & Seq
Reverse (-)
49675790 .. 49677020
1231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00034260.1

Sequence Viewer

Length: 279 bp
ATGGCGGTAGAGCTCGGACAATACGGAATACGTGTGAATTGTGTATCCCCTTATTTGGTGGAGACGTCGTTGACCAAGGACTTCTTAAAGCTCGACGATGAGGGAGTTGGCGGTGTTTACTCCAACCTCAAAGGGGCGGTGCTGAAGGCGGAAGATGTGGCGGAGGCTGTTCTTTACTTGGGGAGTGATGAGTCCAAGTATGTTAGTGGGCATAATTTGGTAGTAGATGGAGGCTACACTATTGTCAACGGCGGAGTTCGCATGTTTAAGCAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

92

Amino Acids

9.85

Weight (kDa)

4.75

Isoelectric Point (pI)

14.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 1 - 80 1.3e-19 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 68
AciI CCGC 6 cut(s) 5, 111, 137, 149, 161, 252
AcuI CTGAAG 1 cut(s) 164
AcyI GRCGYC 1 cut(s) 65
AfiI CCNNNNNNNGG 2 cut(s) 55, 133
AflIII ACRYGT 1 cut(s) 31
AluBI AGCT 2 cut(s) 13, 91
AluI AGCT 2 cut(s) 13, 91
Alw21I GWGCWC 1 cut(s) 15
Alw26I GTCTC 1 cut(s) 56
BanII GRGCYC 1 cut(s) 15
Bbv12I GWGCWC 1 cut(s) 15
BccI CCATC 1 cut(s) 221
BceAI ACGGC 1 cut(s) 265
BciVI GTATCC 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 56
BfuI GTATCC 1 cut(s) 55
BsaAI YACGTR 1 cut(s) 32
BsaHI GRCGYC 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 75
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 133
BseDI CCNNGG 1 cut(s) 75
BseLI CCNNNNNNNGG 2 cut(s) 55, 133
BsiHKAI GWGCWC 1 cut(s) 15
BslI CCNNNNNNNGG 2 cut(s) 55, 133
BsmAI GTCTC 1 cut(s) 56
BsmBI CGTCTC 1 cut(s) 56
Bsp1286I GDGCHC 1 cut(s) 15
BspACI CCGC 6 cut(s) 5, 111, 137, 149, 161, 252
BssECI CCNNGG 1 cut(s) 75
BssNI GRCGYC 1 cut(s) 65
BssT1I CCWWGG 1 cut(s) 75
BstACI GRCGYC 1 cut(s) 65
BstBAI YACGTR 1 cut(s) 32
BstMAI GTCTC 1 cut(s) 56
BstMWI GCNNNNNNNGC 1 cut(s) 258
BstNSI RCATGY 1 cut(s) 265
BsuI GTATCC 1 cut(s) 55
CviAII CATG 1 cut(s) 262
CviJI RGCY 4 cut(s) 13, 91, 167, 234
CviKI_1 RGCY 4 cut(s) 13, 91, 167, 234
EciI GGCGGA 3 cut(s) 164, 176, 267
Ecl136II GAGCTC 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 75
Eco24I GRGCYC 1 cut(s) 15
Eco53kI GAGCTC 1 cut(s) 13
Eco57I CTGAAG 1 cut(s) 164
EcoICRI GAGCTC 1 cut(s) 13
EcoT14I CCWWGG 1 cut(s) 75
EcoT38I GRGCYC 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 75
Esp3I CGTCTC 1 cut(s) 56
FaeI CATG 1 cut(s) 265
FaiI YATR 3 cut(s) 201, 213, 263
FalI AAGNNNNNCTT 2 cut(s) 68, 100
FatI CATG 1 cut(s) 261
FriOI GRGCYC 1 cut(s) 15
Hin1I GRCGYC 1 cut(s) 65
Hin1II CATG 1 cut(s) 265
HincII GTYRAC 2 cut(s) 72, 247
HindII GTYRAC 2 cut(s) 72, 247
HinfI GANTC 1 cut(s) 191
Hpy166II GTNNAC 3 cut(s) 72, 118, 247
Hpy188I TCNGA 1 cut(s) 17
Hpy8I GTNNAC 3 cut(s) 72, 118, 247
Hpy99I CGWCG 2 cut(s) 70, 98
HpyAV CCTTC 1 cut(s) 139
HpyCH4IV ACGT 2 cut(s) 31, 65
HpyF10VI GCNNNNNNNGC 1 cut(s) 258
HpySE526I ACGT 2 cut(s) 31, 65
Hsp92I GRCGYC 1 cut(s) 65
Hsp92II CATG 1 cut(s) 265
MaeII ACGT 2 cut(s) 31, 65
MboII GAAGA 1 cut(s) 164
MhlI GDGCHC 1 cut(s) 15
MluCI AATT 2 cut(s) 37, 214
MlyI GAGTC 1 cut(s) 200
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 4 cut(s) 94, 137, 157, 224
MseI TTAA 3 cut(s) 86, 267, 277
MwoI GCNNNNNNNGC 1 cut(s) 258
NlaIII CATG 1 cut(s) 265
NspI RCATGY 1 cut(s) 265
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
Ppu21I YACGTR 1 cut(s) 32
Psp124BI GAGCTC 1 cut(s) 15
SacI GAGCTC 1 cut(s) 15
SaqAI TTAA 3 cut(s) 86, 267, 277
SchI GAGTC 1 cut(s) 200
SduI GDGCHC 1 cut(s) 15
SetI ASST 5 cut(s) 15, 34, 68, 93, 129
SgeI CNNG 7 cut(s) 26, 44, 88, 104, 190, 208, 274
Sse9I AATT 2 cut(s) 37, 214
SsiI CCGC 6 cut(s) 5, 111, 137, 149, 161, 252
SstI GAGCTC 1 cut(s) 15
StyI CCWWGG 1 cut(s) 75
TaiI ACGT 2 cut(s) 34, 68
TaqI TCGA 1 cut(s) 93
TasI AATT 2 cut(s) 37, 214
Tru1I TTAA 3 cut(s) 86, 267, 277
Tru9I TTAA 3 cut(s) 86, 267, 277
TspGWI ACGGA 1 cut(s) 39
XceI RCATGY 1 cut(s) 265
ZraI GACGTC 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.