Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001933

Physical Location & Seq

Genomic Coordinates Forward (+)

40111968 .. 40115359

Gene Structure 3392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG348500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGATGATGCACATTCAGTGCTTTTGAACATGTTATGGCTTGAAGGTAAGGTAGCACTGATCACCGGCGGAGCCAGACTCTTCTCCAAACACGGCACTGAAGTCGTGATAGCCGACATGCAAGACGACTTGGGTCAATCCGTTTGCAAAGACCTGAACCCTTCCTTGACTACCTTCGTTCATTGCGACGTGACGAACGAAAAAGACGTCGAAAACGCAGTGAATACAACCACCACCAAGTATGGAAAGCTAGACATTATGTTCAACAATGCCGGCATCGTCCGCGTGGCCAAGCTGAACATCCTTGACAACGACAAGGCCGAGTTTGAGCAGGTTCTCGGAGTGAACCTGGTTGGTGTCTTCTTGGGGATCAAGCATGCGGCTCGGGTCATGATGGGAGCTCGAAAAGGGACCATTATCAACACGGCTAGCGTTTGTTCAACCATAGGGGGCTGCGCGTCGCATGCGTACACCAGTTCAAAGCATGGAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

164

Amino Acids

17.55

Weight (kDa)

6.28

Isoelectric Point (pI)

12.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	18 - 164	1.3e-30	short chain dehydrogenase
adh_short_C2	PF13561	25 - 164	3.4e-31	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23771 FvH4_3g25650 FvH4_3g25660
malus_domestica	MD11G1171900.v1.1 MD11G1172300.v1.1 MD12G1032600.v1.1
prunus_persica	Prupe.6G138400_v2.0.a1 Prupe.6G138600_v2.0.a1 Prupe.6G138700_v2.0.a1 Prupe.6G138800_v2.0.a1
pyrus_communis	pycom11g14280 pycom11g14340 pycom11g14350 pycom11g14410
rosa_chinensis	RchiOBHm_Chr5g0047121 RchiOBHm_Chr5g0047151
rosa_laevigata	RLG00000034467 RLG00000034469 RLG00000034471 RLG00000034472 RLG00000034473
rosa_multiflora	Rmu_co8232047.1_g000001 Rmu_co8263687.1_g000001 Rmu_sc0001565.1_g000029 Rmu_sc0003154.1_g000029 Rmu_sc0005145.1_g000014 Rmu_sc0019535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034260 Rroxscaffold_1G00034290 Rroxscaffold_1G00034310
rosa_rugosa	Rorug05G0234100 Rorug05G0234200 Rorug05G0234400 Rorug05G0234500 Rorug05G0234700
rosa_samantha	Rh5AG313100 Rh5AG313200 Rh5BG322100 Rh5CG348500 Rh5CG348600 Rh5CG348700 Rh5CG348900 Rh5CG349100 Rh5DG333100 Rh5DG333200
rosa_wichuraiana	Rw5G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	210
Acc36I	ACCTGC	1 cut(s)	322
AccII	CGCG	2 cut(s)	285, 458
AciI	CCGC	3 cut(s)	69, 283, 380
AclWI	GGATC	1 cut(s)	377
AcoI	YGGCCR	1 cut(s)	288
AcuI	CTGAAG	1 cut(s)	120
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	1 cut(s)	470
AflIII	ACRYGT	1 cut(s)	30
AgsI	TTSAA	5 cut(s)	28, 44, 265, 441, 480
AjiI	CACGTC	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	348
AluBI	AGCT	3 cut(s)	250, 295, 401
AluI	AGCT	3 cut(s)	250, 295, 401
Alw21I	GWGCWC	1 cut(s)	403
AlwI	GGATC	1 cut(s)	377
Ama87I	CYCGRG	1 cut(s)	384
AoxI	GGCC	2 cut(s)	288, 318
ApeKI	GCWGC	1 cut(s)	453
ArsI	GACNNNNNNTTYG	2 cut(s)	192, 224
AspLEI	GCGC	1 cut(s)	458
AspS9I	GGNCC	1 cut(s)	411
AsuHPI	GGTGA	1 cut(s)	55
AsuNHI	GCTAGC	1 cut(s)	428
AvaI	CYCGRG	1 cut(s)	384
AvaII	GGWCC	1 cut(s)	411
BalI	TGGCCA	1 cut(s)	290
BanII	GRGCYC	1 cut(s)	403
BbsI	GAAGAC	1 cut(s)	352
Bbv12I	GWGCWC	1 cut(s)	403
BbvI	GCAGC	1 cut(s)	440
BccI	CCATC	1 cut(s)	388
BceAI	ACGGC	2 cut(s)	109, 441
BcgI	CGANNNNNNTGC	4 cut(s)	85, 119, 365, 399
BciT130I	CCWGG	1 cut(s)	350
BclI	TGATCA	1 cut(s)	60
BfaI	CTAG	3 cut(s)	251, 429, 493
BfuAI	ACCTGC	1 cut(s)	322
BisI	GCNGC	2 cut(s)	381, 454
BlsI	GCNGC	2 cut(s)	382, 455
Bme1390I	CCNGG	1 cut(s)	350
Bme18I	GGWCC	1 cut(s)	411
BmeT110I	CYCGRG	1 cut(s)	384
BmgBI	CACGTC	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	411
BmiI	GGNNCC	2 cut(s)	73, 412
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	1 cut(s)	285
BmtI	GCTAGC	1 cut(s)	432
BoxI	GACNNNNGTC	1 cut(s)	132
BpiI	GAAGAC	1 cut(s)	352
BplI	GAGNNNNNCTC	2 cut(s)	63, 95
BsaHI	GRCGYC	1 cut(s)	207
Bse118I	RCCGGY	2 cut(s)	65, 272
Bse1I	ACTGG	1 cut(s)	474
Bse3DI	GCAATG	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	350
BseGI	GGATG	2 cut(s)	10, 300
BseMI	GCAATG	1 cut(s)	181
BseNI	ACTGG	1 cut(s)	474
BseXI	GCAGC	1 cut(s)	440
Bsh1236I	CGCG	2 cut(s)	285, 458
BshFI	GGCC	2 cut(s)	290, 320
BsiHKAI	GWGCWC	1 cut(s)	403
BsiHKCI	CYCGRG	1 cut(s)	384
BsiSI	CCGG	2 cut(s)	66, 273
BslFI	GGGAC	1 cut(s)	424
BsmFI	GGGAC	1 cut(s)	424
BsnI	GGCC	2 cut(s)	290, 320
BsoBI	CYCGRG	1 cut(s)	384
Bsp1286I	GDGCHC	1 cut(s)	403
Bsp143I	GATC	2 cut(s)	60, 369
BspACI	CCGC	3 cut(s)	69, 283, 380
BspANI	GGCC	2 cut(s)	290, 320
BspFNI	CGCG	2 cut(s)	285, 458
BspHI	TCATGA	1 cut(s)	390
BspLI	GGNNCC	2 cut(s)	73, 412
BspMI	ACCTGC	1 cut(s)	322
BspOI	GCTAGC	1 cut(s)	432
BspPI	GGATC	1 cut(s)	377
BsrDI	GCAATG	1 cut(s)	181
BsrFI	RCCGGY	2 cut(s)	65, 272
BsrI	ACTGG	1 cut(s)	474
BssAI	RCCGGY	2 cut(s)	65, 272
BssMI	GATC	2 cut(s)	60, 369
BssNI	GRCGYC	1 cut(s)	207
Bst2UI	CCWGG	1 cut(s)	350
Bst6I	CTCTTC	1 cut(s)	86
BstACI	GRCGYC	1 cut(s)	207
BstC8I	GCNNGC	4 cut(s)	274, 378, 430, 465
BstF5I	GGATG	2 cut(s)	10, 300
BstFNI	CGCG	2 cut(s)	285, 458
BstHHI	GCGC	1 cut(s)	458
BstKTI	GATC	2 cut(s)	63, 372
BstMBI	GATC	2 cut(s)	60, 369
BstMWI	GCNNNNNNNGC	2 cut(s)	282, 464
BstNI	CCWGG	1 cut(s)	350
BstNSI	RCATGY	4 cut(s)	34, 121, 380, 467
BstPAI	GACNNNNGTC	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	348
BstUI	CGCG	2 cut(s)	285, 458
BstV1I	GCAGC	1 cut(s)	440
BstV2I	GAAGAC	1 cut(s)	352
BsuRI	GGCC	2 cut(s)	290, 320
BtrI	CACGTC	1 cut(s)	190
BtsCI	GGATG	2 cut(s)	10, 300
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	4 cut(s)	24, 56, 96, 225
BveI	ACCTGC	1 cut(s)	322
Cac8I	GCNNGC	4 cut(s)	274, 378, 430, 465
CciI	TCATGA	1 cut(s)	390
CfoI	GCGC	1 cut(s)	458
Cfr10I	RCCGGY	2 cut(s)	65, 272
Cfr13I	GGNCC	1 cut(s)	411
CseI	GACGC	1 cut(s)	447
CsiI	ACCWGGT	1 cut(s)	348
Csp6I	GTAC	1 cut(s)	469
CviAII	CATG	6 cut(s)	31, 118, 377, 391, 464, 485
CviQI	GTAC	1 cut(s)	469
DpnI	GATC	2 cut(s)	62, 371
DpnII	GATC	2 cut(s)	60, 369
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
EciI	GGCGGA	1 cut(s)	84
Ecl136II	GAGCTC	1 cut(s)	401
Eco24I	GRGCYC	1 cut(s)	403
Eco47I	GGWCC	1 cut(s)	411
Eco53kI	GAGCTC	1 cut(s)	401
Eco57I	CTGAAG	1 cut(s)	120
Eco88I	CYCGRG	1 cut(s)	384
EcoICRI	GAGCTC	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	348
EcoT38I	GRGCYC	1 cut(s)	403
FaeI	CATG	6 cut(s)	34, 121, 380, 394, 467, 488
FaqI	GGGAC	1 cut(s)	424
FatI	CATG	6 cut(s)	30, 117, 376, 390, 463, 484
FbaI	TGATCA	1 cut(s)	60
Fnu4HI	GCNGC	2 cut(s)	381, 454
FokI	GGATG	2 cut(s)	17, 287
FriOI	GRGCYC	1 cut(s)	403
Fsp4HI	GCNGC	2 cut(s)	381, 454
FspBI	CTAG	3 cut(s)	251, 429, 493
GlaI	GCGC	1 cut(s)	457
GluI	GCNGC	2 cut(s)	381, 454
HaeIII	GGCC	2 cut(s)	290, 320
HapII	CCGG	2 cut(s)	66, 273
HgaI	GACGC	1 cut(s)	447
HhaI	GCGC	1 cut(s)	458
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	6 cut(s)	34, 121, 380, 394, 467, 488
Hin6I	GCGC	1 cut(s)	456
HinP1I	GCGC	1 cut(s)	456
HinfI	GANTC	2 cut(s)	78, 489
HpaII	CCGG	2 cut(s)	66, 273
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	2 cut(s)	346, 471
Hpy188I	TCNGA	1 cut(s)	341
Hpy188III	TCNNGA	2 cut(s)	106, 391
Hpy8I	GTNNAC	2 cut(s)	346, 471
Hpy99I	CGWCG	3 cut(s)	191, 212, 463
HpyAV	CCTTC	3 cut(s)	38, 171, 184
HpyCH4IV	ACGT	2 cut(s)	189, 207
HpyCH4V	TGCA	3 cut(s)	11, 121, 147
HpyF10VI	GCNNNNNNNGC	2 cut(s)	282, 464
HpySE526I	ACGT	2 cut(s)	189, 207
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	6 cut(s)	34, 121, 380, 394, 467, 488
HspAI	GCGC	1 cut(s)	456
KroI	GCCGGC	1 cut(s)	272
KroNI	GCCGGC	1 cut(s)	274
Ksp22I	TGATCA	1 cut(s)	60
Kzo9I	GATC	2 cut(s)	60, 369
LmnI	GCTCC	2 cut(s)	71, 398
LpnPI	CCDG	8 cut(s)	79, 88, 167, 286, 317, 335, 362, 487
Lsp1109I	GCAGC	1 cut(s)	440
LweI	GCATC	1 cut(s)	285
MabI	ACCWGGT	1 cut(s)	348
MaeI	CTAG	3 cut(s)	251, 429, 493
MaeII	ACGT	2 cut(s)	189, 207
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	2 cut(s)	62, 371
MboI	GATC	2 cut(s)	60, 369
MboII	GAAGA	2 cut(s)	73, 352
MhlI	GDGCHC	1 cut(s)	403
MlsI	TGGCCA	1 cut(s)	290
MluNI	TGGCCA	1 cut(s)	290
MlyI	GAGTC	1 cut(s)	72
Mox20I	TGGCCA	1 cut(s)	290
MroNI	GCCGGC	1 cut(s)	272
MscI	TGGCCA	1 cut(s)	290
Msp20I	TGGCCA	1 cut(s)	290
MspI	CCGG	2 cut(s)	66, 273
MspR9I	CCNGG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	350
MvnI	CGCG	2 cut(s)	285, 458
MwoI	GCNNNNNNNGC	2 cut(s)	282, 464
NaeI	GCCGGC	1 cut(s)	274
NdeII	GATC	2 cut(s)	60, 369
NgoMIV	GCCGGC	1 cut(s)	272
NheI	GCTAGC	1 cut(s)	428
NlaIII	CATG	6 cut(s)	34, 121, 380, 394, 467, 488
NlaIV	GGNNCC	2 cut(s)	73, 412
NmeAIII	GCCGAG	1 cut(s)	346
NmuCI	GTSAC	1 cut(s)	190
NspI	RCATGY	4 cut(s)	34, 121, 380, 467
PaeI	GCATGC	2 cut(s)	380, 467
PagI	TCATGA	1 cut(s)	390
PciI	ACATGT	1 cut(s)	30
PcsI	WCGNNNNNNNCGW	5 cut(s)	111, 183, 195, 204, 318
PdiI	GCCGGC	1 cut(s)	274
PkrI	GCNGC	2 cut(s)	382, 455
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
PscI	ACATGT	1 cut(s)	30
PshAI	GACNNNNGTC	1 cut(s)	132
Psp124BI	GAGCTC	1 cut(s)	403
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	2 cut(s)	73, 412
PspPI	GGNCC	1 cut(s)	411
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
SacI	GAGCTC	1 cut(s)	403
SatI	GCNGC	2 cut(s)	381, 454
Sau3AI	GATC	2 cut(s)	60, 369
Sau96I	GGNCC	1 cut(s)	411
SchI	GAGTC	1 cut(s)	72
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	1 cut(s)	403
SexAI	ACCWGGT	1 cut(s)	348
SfaNI	GCATC	1 cut(s)	285
SgrAI	CRCCGGYG	1 cut(s)	65
SinI	GGWCC	1 cut(s)	411
SphI	GCATGC	2 cut(s)	380, 467
SsiI	CCGC	3 cut(s)	69, 283, 380
SspMI	CTAG	3 cut(s)	251, 429, 493
SstI	GAGCTC	1 cut(s)	403
StyD4I	CCNGG	1 cut(s)	348
TaiI	ACGT	2 cut(s)	192, 210
TaqI	TCGA	2 cut(s)	210, 403
TauI	GCSGC	1 cut(s)	383
TscAI	CASTG	4 cut(s)	24, 63, 103, 225
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	1 cut(s)	453
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	1 cut(s)	170
TspGWI	ACGGA	1 cut(s)	130
TspRI	CASTG	4 cut(s)	24, 63, 103, 225
VpaK11BI	GGWCC	1 cut(s)	411
XceI	RCATGY	4 cut(s)	34, 121, 380, 467
XspI	CTAG	3 cut(s)	251, 429, 493
ZraI	GACGTC	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.