Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001933

Physical Location & Seq

Genomic Coordinates Reverse (-)

49718928 .. 49722219

Gene Structure 3292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00034290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCGAGTTTTCCATTACTCTCGGCTGCTGCAAGACAACTTGGGCCAATCCATTTGCGAGACCTGAACCCTTCCTCCACCACCTTCATCCATTGCGATGTGACGAACAAAAAAGACGTCGAAAATGTAGTGAACACGGCCACCGCCAAGTATGGAAAGCTAGACATTATGTTCAACAATGCAGGCATCGGTGACGTGGCCAAGCTAAACATCCTCGACAACAACAAGGCCGATTTTGAGCAGGTCCTAAGAGTGAACGTGGTAGGTGTCTTCCTGGGGATCAAGCACGCGGATCGAGTGATGATGGGAGCTCGAAAAGGGACTATTATCAACATGGCTAGTGTTTGCTCGATTATAGGGGGCGGTGCGTCGCATGCGTACACGAGTTTGAAGAATGGAGTTGAGGGGCTCATGAAGAACACGGCGGTGCTAAAGGCGGAAGATGTGGCGGAGGCTATTCTTTACTTGGGGAGTGATGAGTCCAAGTATGTTAGTGGGCGTAATTTGGTAGTAAATGGAGGCTACACTATTGTCAATGCCAGTGGTAAAGGGGAGGAGAATGAACTTAGAATGAGAAAAAAGAGAAGAATGAAACCCCTGAGTGGCCGGAATTCGCCGGTTACAGTAGAGGGGGAAGGGTTGAGTGATCTTCGGGATGTTCTGGTATTGGTGGCACCAGATTTGGAAGTTGCAGTAATGGAGTATTCAGTTGGGGAATCTTCGGGCAAGAATGACGATGTTGATTTCACTAAACTGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

253

Amino Acids

27.11

Weight (kDa)

6.91

Isoelectric Point (pI)

23.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	24 - 143	6.4e-27	short chain dehydrogenase
adh_short_C2	PF13561	27 - 143	4.6e-27	Enoyl-(Acyl carrier protein) reductase
adh_short_C2	PF13561	144 - 176	9.6e-07	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23771 FvH4_3g25650 FvH4_3g25660
malus_domestica	MD11G1171900.v1.1 MD11G1172300.v1.1 MD12G1032600.v1.1
prunus_persica	Prupe.6G138400_v2.0.a1 Prupe.6G138600_v2.0.a1 Prupe.6G138700_v2.0.a1 Prupe.6G138800_v2.0.a1
pyrus_communis	pycom11g14280 pycom11g14340 pycom11g14350 pycom11g14410
rosa_chinensis	RchiOBHm_Chr5g0047121 RchiOBHm_Chr5g0047151
rosa_laevigata	RLG00000034467 RLG00000034469 RLG00000034471 RLG00000034472 RLG00000034473
rosa_multiflora	Rmu_co8232047.1_g000001 Rmu_co8263687.1_g000001 Rmu_sc0001565.1_g000029 Rmu_sc0003154.1_g000029 Rmu_sc0005145.1_g000014 Rmu_sc0019535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034260 Rroxscaffold_1G00034290 Rroxscaffold_1G00034310
rosa_rugosa	Rorug05G0234100 Rorug05G0234200 Rorug05G0234400 Rorug05G0234500 Rorug05G0234700
rosa_samantha	Rh5AG313100 Rh5AG313200 Rh5BG322100 Rh5CG348500 Rh5CG348600 Rh5CG348700 Rh5CG348900 Rh5CG349100 Rh5DG333100 Rh5DG333200
rosa_wichuraiana	Rw5G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	120
Acc36I	ACCTGC	1 cut(s)	232
AccB1I	GGYRCC	1 cut(s)	673
AccII	CGCG	1 cut(s)	290
AciI	CCGC	6 cut(s)	144, 290, 363, 425, 437, 449
AclWI	GGATC	2 cut(s)	287, 300
AcoI	YGGCCR	3 cut(s)	138, 198, 604
AcsI	RAATTY	1 cut(s)	610
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	1 cut(s)	380
AfiI	CCNNNNNNNGG	1 cut(s)	602
AgsI	TTSAA	2 cut(s)	175, 391
AjiI	CACGTC	1 cut(s)	196
AjnI	CCWGG	1 cut(s)	273
AleI	CACNNNNGTG	1 cut(s)	425
AloI	GAACNNNNNNTCC	2 cut(s)	59, 91
AluBI	AGCT	3 cut(s)	160, 205, 311
AluI	AGCT	3 cut(s)	160, 205, 311
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	1 cut(s)	54
AlwI	GGATC	2 cut(s)	287, 300
AoxI	GGCC	5 cut(s)	44, 138, 198, 228, 604
ApeKI	GCWGC	2 cut(s)	26, 29
ApoI	RAATTY	1 cut(s)	610
ArsI	GACNNNNNNTTYG	2 cut(s)	102, 134
AspS9I	GGNCC	2 cut(s)	44, 244
AsuHPI	GGTGA	1 cut(s)	203
AvaII	GGWCC	1 cut(s)	244
BalI	TGGCCA	1 cut(s)	200
BanI	GGYRCC	1 cut(s)	673
BanII	GRGCYC	2 cut(s)	313, 411
BauI	CACGAG	1 cut(s)	382
BbsI	GAAGAC	1 cut(s)	262
Bbv12I	GWGCWC	1 cut(s)	313
BbvI	GCAGC	2 cut(s)	13, 16
BccI	CCATC	1 cut(s)	298
BceAI	ACGGC	2 cut(s)	153, 438
BcgI	CGANNNNNNTGC	2 cut(s)	275, 309
BciT130I	CCWGG	1 cut(s)	275
BcoDI	GTCTC	1 cut(s)	54
BfaI	CTAG	2 cut(s)	161, 339
BfuAI	ACCTGC	1 cut(s)	232
BisI	GCNGC	2 cut(s)	27, 30
BlsI	GCNGC	2 cut(s)	28, 31
Bme1390I	CCNGG	1 cut(s)	275
Bme18I	GGWCC	1 cut(s)	244
BmgBI	CACGTC	1 cut(s)	196
BmgT120I	GGNCC	2 cut(s)	44, 244
BmiI	GGNNCC	1 cut(s)	675
BmrFI	CCNGG	1 cut(s)	275
BmsI	GCATC	1 cut(s)	195
BpiI	GAAGAC	1 cut(s)	262
BsaHI	GRCGYC	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	274
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	1 cut(s)	602
Bse118I	RCCGGY	1 cut(s)	616
Bse1I	ACTGG	2 cut(s)	540, 759
Bse3DI	GCAATG	1 cut(s)	91
BseBI	CCWGG	1 cut(s)	275
BseDI	CCNNGG	1 cut(s)	274
BseGI	GGATG	3 cut(s)	87, 210, 661
BseLI	CCNNNNNNNGG	1 cut(s)	602
BseMI	GCAATG	1 cut(s)	91
BseMII	CTCAG	1 cut(s)	590
BseNI	ACTGG	2 cut(s)	540, 759
BseRI	GAGGAG	1 cut(s)	569
BseXI	GCAGC	2 cut(s)	13, 16
Bsh1236I	CGCG	1 cut(s)	290
BshFI	GGCC	5 cut(s)	46, 140, 200, 230, 606
BshNI	GGYRCC	1 cut(s)	673
BsiHKAI	GWGCWC	1 cut(s)	313
BsiSI	CCGG	2 cut(s)	607, 617
BslFI	GGGAC	1 cut(s)	334
BslI	CCNNNNNNNGG	1 cut(s)	602
BsmAI	GTCTC	1 cut(s)	54
BsmFI	GGGAC	1 cut(s)	334
BsnI	GGCC	5 cut(s)	46, 140, 200, 230, 606
Bso31I	GGTCTC	1 cut(s)	54
Bsp1286I	GDGCHC	2 cut(s)	313, 411
Bsp143I	GATC	3 cut(s)	279, 292, 646
BspACI	CCGC	6 cut(s)	144, 290, 363, 425, 437, 449
BspANI	GGCC	5 cut(s)	46, 140, 200, 230, 606
BspCNI	CTCAG	1 cut(s)	591
BspFNI	CGCG	1 cut(s)	290
BspHI	TCATGA	1 cut(s)	411
BspLI	GGNNCC	1 cut(s)	675
BspMI	ACCTGC	1 cut(s)	232
BspPI	GGATC	2 cut(s)	287, 300
BspT107I	GGYRCC	1 cut(s)	673
BspTNI	GGTCTC	1 cut(s)	54
BsrDI	GCAATG	1 cut(s)	91
BsrFI	RCCGGY	1 cut(s)	616
BsrI	ACTGG	2 cut(s)	540, 759
BssAI	RCCGGY	1 cut(s)	616
BssECI	CCNNGG	1 cut(s)	274
BssMI	GATC	3 cut(s)	279, 292, 646
BssNI	GRCGYC	1 cut(s)	117
BssSI	CACGAG	1 cut(s)	382
Bst2BI	CACGAG	1 cut(s)	382
Bst2UI	CCWGG	1 cut(s)	275
Bst4CI	ACNGT	1 cut(s)	625
BstACI	GRCGYC	1 cut(s)	117
BstC8I	GCNNGC	3 cut(s)	184, 288, 375
BstDEI	CTNAG	3 cut(s)	248, 566, 599
BstF5I	GGATG	3 cut(s)	87, 210, 661
BstFNI	CGCG	1 cut(s)	290
BstKTI	GATC	3 cut(s)	282, 295, 649
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	3 cut(s)	279, 292, 646
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstNI	CCWGG	1 cut(s)	275
BstNSI	RCATGY	1 cut(s)	377
BstSCI	CCNGG	1 cut(s)	273
BstUI	CGCG	1 cut(s)	290
BstV1I	GCAGC	2 cut(s)	13, 16
BstV2I	GAAGAC	1 cut(s)	262
BsuRI	GGCC	5 cut(s)	46, 140, 200, 230, 606
BtgZI	GCGATG	1 cut(s)	111
BtrI	CACGTC	1 cut(s)	196
BtsCI	GGATG	3 cut(s)	87, 210, 661
BtsIMutI	CAGTG	1 cut(s)	547
BveI	ACCTGC	1 cut(s)	232
Cac8I	GCNNGC	3 cut(s)	184, 288, 375
CciI	TCATGA	1 cut(s)	411
Cfr10I	RCCGGY	1 cut(s)	616
Cfr13I	GGNCC	2 cut(s)	44, 244
CseI	GACGC	1 cut(s)	357
Csp6I	GTAC	1 cut(s)	379
CspCI	CAANNNNNGTGG	2 cut(s)	523, 558
CviAII	CATG	3 cut(s)	334, 374, 412
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	3 cut(s)	248, 566, 599
DpnI	GATC	3 cut(s)	281, 294, 648
DpnII	GATC	3 cut(s)	279, 292, 646
EaeI	YGGCCR	3 cut(s)	138, 198, 604
EciI	GGCGGA	2 cut(s)	452, 464
Ecl136II	GAGCTC	1 cut(s)	311
Eco24I	GRGCYC	2 cut(s)	313, 411
Eco31I	GGTCTC	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	244
Eco53kI	GAGCTC	1 cut(s)	311
EcoICRI	GAGCTC	1 cut(s)	311
EcoO109I	RGGNCCY	1 cut(s)	244
EcoRI	GAATTC	1 cut(s)	610
EcoRII	CCWGG	1 cut(s)	273
EcoT38I	GRGCYC	2 cut(s)	313, 411
FaeI	CATG	3 cut(s)	337, 377, 415
FaiI	YATR	8 cut(s)	153, 170, 335, 356, 375, 413, 489, 760
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	3 cut(s)	333, 373, 411
Fnu4HI	GCNGC	2 cut(s)	27, 30
FokI	GGATG	3 cut(s)	74, 197, 668
FriOI	GRGCYC	2 cut(s)	313, 411
Fsp4HI	GCNGC	2 cut(s)	27, 30
FspBI	CTAG	2 cut(s)	161, 339
GluI	GCNGC	2 cut(s)	27, 30
HaeIII	GGCC	5 cut(s)	46, 140, 200, 230, 606
HapII	CCGG	2 cut(s)	607, 617
HgaI	GACGC	1 cut(s)	357
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	3 cut(s)	337, 377, 415
HinfI	GANTC	2 cut(s)	479, 716
HpaII	CCGG	2 cut(s)	607, 617
HphI	GGTGA	1 cut(s)	203
Hpy166II	GTNNAC	3 cut(s)	133, 256, 381
Hpy188III	TCNNGA	2 cut(s)	412, 653
Hpy8I	GTNNAC	3 cut(s)	133, 256, 381
Hpy99I	CGWCG	2 cut(s)	122, 373
HpyAV	CCTTC	3 cut(s)	81, 94, 629
HpyCH4III	ACNGT	1 cut(s)	625
HpyCH4IV	ACGT	3 cut(s)	117, 195, 258
HpyCH4V	TGCA	3 cut(s)	32, 182, 692
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	3 cut(s)	248, 566, 599
HpySE526I	ACGT	3 cut(s)	117, 195, 258
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	3 cut(s)	337, 377, 415
Kzo9I	GATC	3 cut(s)	279, 292, 646
LmnI	GCTCC	1 cut(s)	308
Lsp1109I	GCAGC	2 cut(s)	13, 16
LweI	GCATC	1 cut(s)	195
MaeI	CTAG	2 cut(s)	161, 339
MaeII	ACGT	3 cut(s)	117, 195, 258
MaeIII	GTNAC	3 cut(s)	100, 191, 619
MalI	GATC	3 cut(s)	281, 294, 648
MboI	GATC	3 cut(s)	279, 292, 646
MboII	GAAGA	7 cut(s)	262, 403, 427, 452, 597, 641, 711
MhlI	GDGCHC	2 cut(s)	313, 411
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	2 cut(s)	502, 610
MluNI	TGGCCA	1 cut(s)	200
MlyI	GAGTC	1 cut(s)	488
MnlI	CCTC	7 cut(s)	85, 224, 397, 445, 512, 547, 622
Mox20I	TGGCCA	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	200
MslI	CAYNNNNRTG	2 cut(s)	96, 425
Msp20I	TGGCCA	1 cut(s)	200
MspI	CCGG	2 cut(s)	607, 617
MspR9I	CCNGG	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	275
MvnI	CGCG	1 cut(s)	290
MwoI	GCNNNNNNNGC	1 cut(s)	374
NdeII	GATC	3 cut(s)	279, 292, 646
NlaIII	CATG	3 cut(s)	337, 377, 415
NlaIV	GGNNCC	1 cut(s)	675
NmuCI	GTSAC	2 cut(s)	100, 191
NspI	RCATGY	1 cut(s)	377
OliI	CACNNNNGTG	1 cut(s)	425
PaeI	GCATGC	1 cut(s)	377
PagI	TCATGA	1 cut(s)	411
PfeI	GAWTC	1 cut(s)	716
PkrI	GCNGC	2 cut(s)	28, 31
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
PpuMI	RGGWCCY	1 cut(s)	244
Psp124BI	GAGCTC	1 cut(s)	313
Psp5II	RGGWCCY	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	273
PspN4I	GGNNCC	1 cut(s)	675
PspPI	GGNCC	2 cut(s)	44, 244
PspPPI	RGGWCCY	1 cut(s)	244
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
RseI	CAYNNNNRTG	2 cut(s)	96, 425
SacI	GAGCTC	1 cut(s)	313
SatI	GCNGC	2 cut(s)	27, 30
Sau3AI	GATC	3 cut(s)	279, 292, 646
Sau96I	GGNCC	2 cut(s)	44, 244
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	1 cut(s)	275
SduI	GDGCHC	2 cut(s)	313, 411
SfaNI	GCATC	1 cut(s)	195
SinI	GGWCC	1 cut(s)	244
SmiMI	CAYNNNNRTG	2 cut(s)	96, 425
SphI	GCATGC	1 cut(s)	377
Sse9I	AATT	2 cut(s)	502, 610
SsiI	CCGC	6 cut(s)	144, 290, 363, 425, 437, 449
SspMI	CTAG	2 cut(s)	161, 339
SstI	GAGCTC	1 cut(s)	313
StyD4I	CCNGG	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	625
TaiI	ACGT	3 cut(s)	120, 198, 261
TaqI	TCGA	5 cut(s)	120, 216, 295, 313, 350
TasI	AATT	2 cut(s)	502, 610
TfiI	GAWTC	1 cut(s)	716
TscAI	CASTG	1 cut(s)	547
TseFI	GTSAC	2 cut(s)	100, 191
TseI	GCWGC	2 cut(s)	26, 29
Tsp45I	GTSAC	2 cut(s)	100, 191
TspDTI	ATGAA	4 cut(s)	76, 428, 576, 605
TspRI	CASTG	1 cut(s)	547
VpaK11BI	GGWCC	1 cut(s)	244
XapI	RAATTY	1 cut(s)	610
XceI	RCATGY	1 cut(s)	377
XspI	CTAG	2 cut(s)	161, 339
ZraI	GACGTC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.