RLG00000034473

KR domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001933
Physical Location & Seq
Forward (+)
43373758 .. 43374540
783 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034473

Sequence Viewer

Length: 783 bp
ATGCGTAGGCTTGAAGGTAAGGTAGCAGTGATTACTGGCGGAGCCAGTGGCATTGGATTATCCACCGCCAGACTCTTCTCCAGACACGGCGCTAAAGTCGTGATCGCCGACGTGCAAGATGACTTGGGCCAATCAGTTTGTAGAGATCTGAACCCTTCCTCCACCACCTTCATCCATTGCAATGTGACGAACGAAAAAGACGTCGAAAATGCTGTGAACACGGCCACCACCAAGTATGGAAAGTTAGACATTATGTTTAACAACGCCGGCTTCAGTGATATGGCCAAGCCGAACATCCTTGACAACAACAAGGCCGATTTTGAGCAGGTCCTTGGAGTGAACCTGGTCGGTGTCTTCCTGGGGATCAAGCACGCAGCTCGGGTGATGATGGGAGCTCGAAAAGGGACTATTATCAACACGGCTAGCGTTTGCTCGATCATAGGGGGCGCTGCATCACATGCGTACACGAGTTCGAAGCATGGAGTCGAGGGGCTCACGAAGAACACAGTGGTAGAGCTCGGACAGTACGGAATACGTGTGAATTGTGTGTCGCCATATTTGGTGGAAACGCCGTTGACCAAGAAATTTTTTAAGTTCGACAATGAGGGACTCGGTGGTGTTTACTCCAACCTCAAAGGGGCGGTGTTGAAGGCGGAAGATGTGGCGGAGGCTGTTCTTTACTTAGGAAGTGATGAGTCCAAGTATGTTAGTGGGCATAATTTGGTAATAGACGGAGGCTACACTATTGTCAACTCAAGGTTCTGTGTGTTTGAGGAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

261

Amino Acids

27.74

Weight (kDa)

7.0

Isoelectric Point (pI)

17.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 7 - 198 4.9e-52 short chain dehydrogenase
KR PF08659 10 - 166 6.6e-08 KR domain
adh_short_C2 PF13561 15 - 248 4.2e-64 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 204
Acc36I ACCTGC 1 cut(s) 316
AciI CCGC 5 cut(s) 39, 66, 641, 653, 665
AclWI GGATC 1 cut(s) 371
AcoI YGGCCR 2 cut(s) 222, 282
AcsI RAATTY 1 cut(s) 584
AcuI CTGAAG 1 cut(s) 256
AcyI GRCGYC 1 cut(s) 201
AfaI GTAC 2 cut(s) 464, 527
AfiI CCNNNNNNNGG 1 cut(s) 637
AflIII ACRYGT 1 cut(s) 535
AgsI TTSAA 2 cut(s) 14, 649
AjiI CACGTC 1 cut(s) 112
AjnI CCWGG 2 cut(s) 342, 357
AloI GAACNNNNNNTCC 2 cut(s) 143, 175
AluBI AGCT 3 cut(s) 377, 395, 517
AluI AGCT 3 cut(s) 377, 395, 517
Alw21I GWGCWC 2 cut(s) 397, 519
AlwI GGATC 1 cut(s) 371
Ama87I CYCGRG 1 cut(s) 378
AoxI GGCC 4 cut(s) 127, 222, 282, 312
ApeKI GCWGC 2 cut(s) 374, 449
ApoI RAATTY 1 cut(s) 584
ArsI GACNNNNNNTTYG 2 cut(s) 186, 218
AspLEI GCGC 2 cut(s) 92, 449
AspS9I GGNCC 2 cut(s) 127, 328
AsuHPI GGTGA 1 cut(s) 394
AsuII TTCGAA 1 cut(s) 473
AsuNHI GCTAGC 1 cut(s) 422
AvaI CYCGRG 1 cut(s) 378
AvaII GGWCC 1 cut(s) 328
BalI TGGCCA 1 cut(s) 284
BanII GRGCYC 3 cut(s) 397, 495, 519
BauI CACGAG 1 cut(s) 466
BbsI GAAGAC 1 cut(s) 346
Bbv12I GWGCWC 2 cut(s) 397, 519
BbvI GCAGC 2 cut(s) 386, 436
BccI CCATC 1 cut(s) 382
BceAI ACGGC 4 cut(s) 103, 237, 435, 556
BcgI CGANNNNNNTGC 2 cut(s) 359, 393
BciT130I CCWGG 2 cut(s) 344, 359
BfaI CTAG 1 cut(s) 423
BfoI RGCGCY 2 cut(s) 93, 450
BfuAI ACCTGC 1 cut(s) 316
BglII AGATCT 1 cut(s) 145
BisI GCNGC 2 cut(s) 375, 450
BlsI GCNGC 2 cut(s) 376, 451
Bme1390I CCNGG 2 cut(s) 344, 359
Bme18I GGWCC 1 cut(s) 328
BmeT110I CYCGRG 1 cut(s) 378
BmgBI CACGTC 1 cut(s) 112
BmgT120I GGNCC 2 cut(s) 127, 328
BmiI GGNNCC 1 cut(s) 43
BmrFI CCNGG 2 cut(s) 344, 359
BmsI GCATC 1 cut(s) 461
BmtI GCTAGC 1 cut(s) 426
BpiI GAAGAC 1 cut(s) 346
BpmI CTGGAG 1 cut(s) 64
Bpu14I TTCGAA 1 cut(s) 473
BpuEI CTTGAG 1 cut(s) 739
BsaAI YACGTR 1 cut(s) 536
BsaHI GRCGYC 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 331, 358
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 1 cut(s) 637
Bse118I RCCGGY 1 cut(s) 266
Bse1I ACTGG 2 cut(s) 40, 45
Bse3DI GCAATG 2 cut(s) 175, 187
BseBI CCWGG 2 cut(s) 344, 359
BseDI CCNNGG 2 cut(s) 331, 358
BseGI GGATG 2 cut(s) 171, 294
BseLI CCNNNNNNNGG 1 cut(s) 637
BseMI GCAATG 2 cut(s) 175, 187
BseNI ACTGG 2 cut(s) 40, 45
BseXI GCAGC 2 cut(s) 386, 436
BshFI GGCC 4 cut(s) 129, 224, 284, 314
BsiHKAI GWGCWC 2 cut(s) 397, 519
BsiHKCI CYCGRG 1 cut(s) 378
BsiSI CCGG 1 cut(s) 267
BslFI GGGAC 2 cut(s) 418, 621
BslI CCNNNNNNNGG 1 cut(s) 637
BsmFI GGGAC 2 cut(s) 418, 621
BsnI GGCC 4 cut(s) 129, 224, 284, 314
BsoBI CYCGRG 1 cut(s) 378
Bsp119I TTCGAA 1 cut(s) 473
Bsp1286I GDGCHC 3 cut(s) 397, 495, 519
Bsp143I GATC 4 cut(s) 102, 145, 363, 435
BspACI CCGC 5 cut(s) 39, 66, 641, 653, 665
BspANI GGCC 4 cut(s) 129, 224, 284, 314
BspLI GGNNCC 1 cut(s) 43
BspMI ACCTGC 1 cut(s) 316
BspOI GCTAGC 1 cut(s) 426
BspPI GGATC 1 cut(s) 371
BspT104I TTCGAA 1 cut(s) 473
BsrDI GCAATG 2 cut(s) 175, 187
BsrFI RCCGGY 1 cut(s) 266
BsrI ACTGG 2 cut(s) 40, 45
BssAI RCCGGY 1 cut(s) 266
BssECI CCNNGG 2 cut(s) 331, 358
BssMI GATC 4 cut(s) 102, 145, 363, 435
BssNI GRCGYC 1 cut(s) 201
BssSI CACGAG 1 cut(s) 466
BssT1I CCWWGG 1 cut(s) 331
Bst2BI CACGAG 1 cut(s) 466
Bst2UI CCWGG 2 cut(s) 344, 359
Bst4CI ACNGT 2 cut(s) 508, 525
Bst6I CTCTTC 1 cut(s) 80
BstACI GRCGYC 1 cut(s) 201
BstAPI GCANNNNNTGC 1 cut(s) 458
BstBAI YACGTR 1 cut(s) 536
BstBI TTCGAA 1 cut(s) 473
BstC8I GCNNGC 3 cut(s) 268, 372, 424
BstDEI CTNAG 1 cut(s) 682
BstF5I GGATG 2 cut(s) 171, 294
BstH2I RGCGCY 2 cut(s) 93, 450
BstHHI GCGC 2 cut(s) 92, 449
BstKTI GATC 4 cut(s) 105, 148, 366, 438
BstMBI GATC 4 cut(s) 102, 145, 363, 435
BstMWI GCNNNNNNNGC 1 cut(s) 458
BstNI CCWGG 2 cut(s) 344, 359
BstNSI RCATGY 1 cut(s) 461
BstSCI CCNGG 2 cut(s) 342, 357
BstV1I GCAGC 2 cut(s) 386, 436
BstV2I GAAGAC 1 cut(s) 346
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BsuRI GGCC 4 cut(s) 129, 224, 284, 314
BtrI CACGTC 1 cut(s) 112
BtsCI GGATG 2 cut(s) 171, 294
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 4 cut(s) 33, 52, 280, 513
BveI ACCTGC 1 cut(s) 316
Cac8I GCNNGC 3 cut(s) 268, 372, 424
CfoI GCGC 2 cut(s) 92, 449
Cfr10I RCCGGY 1 cut(s) 266
Cfr13I GGNCC 2 cut(s) 127, 328
CsiI ACCWGGT 1 cut(s) 342
Csp6I GTAC 2 cut(s) 463, 526
CviAII CATG 2 cut(s) 458, 479
CviQI GTAC 2 cut(s) 463, 526
DdeI CTNAG 1 cut(s) 682
DpnI GATC 4 cut(s) 104, 147, 365, 437
DpnII GATC 4 cut(s) 102, 145, 363, 435
EaeI YGGCCR 2 cut(s) 222, 282
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
EciI GGCGGA 3 cut(s) 54, 668, 680
Ecl136II GAGCTC 2 cut(s) 395, 517
Eco130I CCWWGG 1 cut(s) 331
Eco24I GRGCYC 3 cut(s) 397, 495, 519
Eco47I GGWCC 1 cut(s) 328
Eco53kI GAGCTC 2 cut(s) 395, 517
Eco57I CTGAAG 1 cut(s) 256
Eco88I CYCGRG 1 cut(s) 378
EcoICRI GAGCTC 2 cut(s) 395, 517
EcoO109I RGGNCCY 1 cut(s) 328
EcoRII CCWGG 2 cut(s) 342, 357
EcoT14I CCWWGG 1 cut(s) 331
EcoT38I GRGCYC 3 cut(s) 397, 495, 519
ErhI CCWWGG 1 cut(s) 331
FaeI CATG 2 cut(s) 461, 482
FaiI YATR 9 cut(s) 237, 254, 281, 440, 459, 480, 556, 705, 717
FaqI GGGAC 2 cut(s) 418, 621
FatI CATG 2 cut(s) 457, 478
Fnu4HI GCNGC 2 cut(s) 375, 450
FokI GGATG 2 cut(s) 158, 281
FriOI GRGCYC 3 cut(s) 397, 495, 519
Fsp4HI GCNGC 2 cut(s) 375, 450
FspBI CTAG 1 cut(s) 423
GlaI GCGC 2 cut(s) 91, 448
GluI GCNGC 2 cut(s) 375, 450
GsuI CTGGAG 1 cut(s) 64
HaeII RGCGCY 2 cut(s) 93, 450
HaeIII GGCC 4 cut(s) 129, 224, 284, 314
HapII CCGG 1 cut(s) 267
HhaI GCGC 2 cut(s) 92, 449
Hin1I GRCGYC 1 cut(s) 201
Hin1II CATG 2 cut(s) 461, 482
Hin6I GCGC 2 cut(s) 90, 447
HinP1I GCGC 2 cut(s) 90, 447
HincII GTYRAC 2 cut(s) 576, 751
HindII GTYRAC 2 cut(s) 576, 751
HinfI GANTC 5 cut(s) 72, 483, 609, 695, 776
HpaII CCGG 1 cut(s) 267
HphI GGTGA 1 cut(s) 394
Hpy166II GTNNAC 6 cut(s) 217, 340, 465, 576, 622, 751
Hpy188I TCNGA 2 cut(s) 150, 521
Hpy188III TCNNGA 3 cut(s) 81, 100, 496
Hpy8I GTNNAC 6 cut(s) 217, 340, 465, 576, 622, 751
Hpy99I CGWCG 2 cut(s) 113, 206
HpyAV CCTTC 4 cut(s) 8, 165, 178, 643
HpyCH4III ACNGT 2 cut(s) 508, 525
HpyCH4IV ACGT 3 cut(s) 111, 201, 535
HpyCH4V TGCA 3 cut(s) 115, 180, 452
HpyF10VI GCNNNNNNNGC 1 cut(s) 458
HpyF3I CTNAG 1 cut(s) 682
HpySE526I ACGT 3 cut(s) 111, 201, 535
Hsp92I GRCGYC 1 cut(s) 201
Hsp92II CATG 2 cut(s) 461, 482
HspAI GCGC 2 cut(s) 90, 447
KroI GCCGGC 1 cut(s) 266
KroNI GCCGGC 1 cut(s) 268
Kzo9I GATC 4 cut(s) 102, 145, 363, 435
LmnI GCTCC 2 cut(s) 41, 392
Lsp1109I GCAGC 2 cut(s) 386, 436
LweI GCATC 1 cut(s) 461
MabI ACCWGGT 1 cut(s) 342
MaeI CTAG 1 cut(s) 423
MaeII ACGT 3 cut(s) 111, 201, 535
MaeIII GTNAC 1 cut(s) 184
MalI GATC 4 cut(s) 104, 147, 365, 437
MboI GATC 4 cut(s) 102, 145, 363, 435
MboII GAAGA 4 cut(s) 67, 346, 511, 668
MflI RGATCY 1 cut(s) 145
MhlI GDGCHC 3 cut(s) 397, 495, 519
MlsI TGGCCA 1 cut(s) 284
MluCI AATT 3 cut(s) 541, 584, 718
MluNI TGGCCA 1 cut(s) 284
MlyI GAGTC 4 cut(s) 66, 492, 603, 704
MmeI TCCRAC 1 cut(s) 651
MnlI CCTC 7 cut(s) 169, 481, 598, 641, 661, 728, 766
Mox20I TGGCCA 1 cut(s) 284
MroNI GCCGGC 1 cut(s) 266
MscI TGGCCA 1 cut(s) 284
MseI TTAA 3 cut(s) 258, 591, 781
MslI CAYNNNNRTG 1 cut(s) 180
Msp20I TGGCCA 1 cut(s) 284
MspI CCGG 1 cut(s) 267
MspR9I CCNGG 2 cut(s) 344, 359
MvaI CCWGG 2 cut(s) 344, 359
MwoI GCNNNNNNNGC 1 cut(s) 458
NaeI GCCGGC 1 cut(s) 268
NdeII GATC 4 cut(s) 102, 145, 363, 435
NgoMIV GCCGGC 1 cut(s) 266
NheI GCTAGC 1 cut(s) 422
NlaIII CATG 2 cut(s) 461, 482
NlaIV GGNNCC 1 cut(s) 43
NmuCI GTSAC 1 cut(s) 184
NspI RCATGY 1 cut(s) 461
NspV TTCGAA 1 cut(s) 473
PcsI WCGNNNNNNNCGW 2 cut(s) 105, 198
PdiI GCCGGC 1 cut(s) 268
PfeI GAWTC 1 cut(s) 776
PkrI GCNGC 2 cut(s) 376, 451
PleI GAGTC 4 cut(s) 66, 491, 603, 703
PpsI GAGTC 4 cut(s) 66, 491, 603, 703
Ppu21I YACGTR 1 cut(s) 536
PpuMI RGGWCCY 1 cut(s) 328
Psp124BI GAGCTC 2 cut(s) 397, 519
Psp5II RGGWCCY 1 cut(s) 328
Psp6I CCWGG 2 cut(s) 342, 357
PspGI CCWGG 2 cut(s) 342, 357
PspN4I GGNNCC 1 cut(s) 43
PspPI GGNCC 2 cut(s) 127, 328
PspPPI RGGWCCY 1 cut(s) 328
PsuI RGATCY 1 cut(s) 145
RsaI GTAC 2 cut(s) 464, 527
RsaNI GTAC 2 cut(s) 463, 526
RseI CAYNNNNRTG 1 cut(s) 180
SacI GAGCTC 2 cut(s) 397, 519
SaqAI TTAA 3 cut(s) 258, 591, 781
SatI GCNGC 2 cut(s) 375, 450
Sau3AI GATC 4 cut(s) 102, 145, 363, 435
Sau96I GGNCC 2 cut(s) 127, 328
SchI GAGTC 4 cut(s) 66, 492, 603, 704
ScrFI CCNGG 2 cut(s) 344, 359
SduI GDGCHC 3 cut(s) 397, 495, 519
SexAI ACCWGGT 1 cut(s) 342
SfaNI GCATC 1 cut(s) 461
SfuI TTCGAA 1 cut(s) 473
SinI GGWCC 1 cut(s) 328
SmiMI CAYNNNNRTG 1 cut(s) 180
SmlI CTYRAG 1 cut(s) 754
SmoI CTYRAG 1 cut(s) 754
Sse9I AATT 3 cut(s) 541, 584, 718
SsiI CCGC 5 cut(s) 39, 66, 641, 653, 665
SspMI CTAG 1 cut(s) 423
SstI GAGCTC 2 cut(s) 397, 519
StyD4I CCNGG 2 cut(s) 342, 357
StyI CCWWGG 1 cut(s) 331
TaaI ACNGT 2 cut(s) 508, 525
TaiI ACGT 3 cut(s) 114, 204, 538
TaqI TCGA 6 cut(s) 204, 397, 434, 473, 486, 597
TasI AATT 3 cut(s) 541, 584, 718
TfiI GAWTC 1 cut(s) 776
Tru1I TTAA 3 cut(s) 258, 591, 781
Tru9I TTAA 3 cut(s) 258, 591, 781
TscAI CASTG 4 cut(s) 33, 52, 280, 513
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 2 cut(s) 374, 449
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 1 cut(s) 160
TspGWI ACGGA 2 cut(s) 543, 747
TspRI CASTG 4 cut(s) 33, 52, 280, 513
VpaK11BI GGWCC 1 cut(s) 328
XapI RAATTY 1 cut(s) 584
XceI RCATGY 1 cut(s) 461
XspI CTAG 1 cut(s) 423
ZraI GACGTC 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.