Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001933

Physical Location & Seq

Genomic Coordinates Forward (+)

3577288 .. 3577551

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1032600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGAACTGCTTGTCACCATACGCATTCGCGTTTCCTTTGGCTCGGAGTTTCGTGGGGCTTGAGGATAAGGAGATCGAGAATGTGATGGACTATCTAGCCAACTTGAAGTTTGTGACACTTAAGGCAGTTAATGTGGCAAATGCAGCTCTATATTTGGCAAGTGTTAAAGCTAGGCACATCAGTGGGCATAATCTCTTGATAGATGGGGATTTTAGCATCCTTAATCCCTCTTTCAAAATGTTTCAGTACCCTCCAGAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

88

Amino Acids

9.7

Weight (kDa)

6.02

Isoelectric Point (pI)

53.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23771 FvH4_3g25650 FvH4_3g25660
malus_domestica	MD11G1171900.v1.1 MD11G1172300.v1.1 MD12G1032600.v1.1
prunus_persica	Prupe.6G138400_v2.0.a1 Prupe.6G138600_v2.0.a1 Prupe.6G138700_v2.0.a1 Prupe.6G138800_v2.0.a1
pyrus_communis	pycom11g14280 pycom11g14340 pycom11g14350 pycom11g14410
rosa_chinensis	RchiOBHm_Chr5g0047121 RchiOBHm_Chr5g0047151
rosa_laevigata	RLG00000034467 RLG00000034469 RLG00000034471 RLG00000034472 RLG00000034473
rosa_multiflora	Rmu_co8232047.1_g000001 Rmu_co8263687.1_g000001 Rmu_sc0001565.1_g000029 Rmu_sc0003154.1_g000029 Rmu_sc0005145.1_g000014 Rmu_sc0019535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034260 Rroxscaffold_1G00034290 Rroxscaffold_1G00034310
rosa_rugosa	Rorug05G0234100 Rorug05G0234200 Rorug05G0234400 Rorug05G0234500 Rorug05G0234700
rosa_samantha	Rh5AG313100 Rh5AG313200 Rh5BG322100 Rh5CG348500 Rh5CG348600 Rh5CG348700 Rh5CG348900 Rh5CG349100 Rh5DG333100 Rh5DG333200
rosa_wichuraiana	Rw5G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	29
AfaI	GTAC	1 cut(s)	248
AflII	CTTAAG	1 cut(s)	119
AgsI	TTSAA	2 cut(s)	106, 235
AleI	CACNNNNGTG	1 cut(s)	180
AluBI	AGCT	2 cut(s)	146, 170
AluI	AGCT	2 cut(s)	146, 170
ApeKI	GCWGC	1 cut(s)	143
AsuHPI	GGTGA	1 cut(s)	6
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	2 cut(s)	79, 197
BfaI	CTAG	2 cut(s)	95, 171
BfrI	CTTAAG	1 cut(s)	119
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
BmsI	GCATC	1 cut(s)	225
BpmI	CTGGAG	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	80
BseGI	GGATG	1 cut(s)	216
BseXI	GCAGC	1 cut(s)	155
Bsh1236I	CGCG	1 cut(s)	29
BsmI	GAATGC	1 cut(s)	23
Bsp143I	GATC	1 cut(s)	72
BspFNI	CGCG	1 cut(s)	29
BspTI	CTTAAG	1 cut(s)	119
BssMI	GATC	1 cut(s)	72
BstAFI	CTTAAG	1 cut(s)	119
BstF5I	GGATG	1 cut(s)	216
BstFNI	CGCG	1 cut(s)	29
BstKTI	GATC	1 cut(s)	75
BstMBI	GATC	1 cut(s)	72
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	1 cut(s)	155
BtsCI	GGATG	1 cut(s)	216
BtsIMutI	CAGTG	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	247
CviJI	RGCY	5 cut(s)	41, 58, 98, 146, 170
CviKI_1	RGCY	5 cut(s)	41, 58, 98, 146, 170
CviQI	GTAC	1 cut(s)	247
DpnI	GATC	1 cut(s)	74
DpnII	GATC	1 cut(s)	72
FaiI	YATR	3 cut(s)	19, 151, 189
Fnu4HI	GCNGC	1 cut(s)	144
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	1 cut(s)	144
FspBI	CTAG	2 cut(s)	95, 171
GluI	GCNGC	1 cut(s)	144
GsuI	CTGGAG	1 cut(s)	237
HinfI	GANTC	1 cut(s)	257
HphI	GGTGA	1 cut(s)	6
Hpy188I	TCNGA	1 cut(s)	45
Hpy188III	TCNNGA	4 cut(s)	76, 196, 254, 261
HpyCH4V	TGCA	1 cut(s)	143
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
Kzo9I	GATC	1 cut(s)	72
Lsp1109I	GCAGC	1 cut(s)	155
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	2 cut(s)	95, 171
MaeIII	GTNAC	2 cut(s)	12, 112
MalI	GATC	1 cut(s)	74
MboI	GATC	1 cut(s)	72
MnlI	CCTC	3 cut(s)	55, 238, 261
MseI	TTAA	4 cut(s)	120, 129, 165, 222
MslI	CAYNNNNRTG	1 cut(s)	180
MspCI	CTTAAG	1 cut(s)	119
Mva1269I	GAATGC	1 cut(s)	23
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	1 cut(s)	143
NdeII	GATC	1 cut(s)	72
NmuCI	GTSAC	2 cut(s)	12, 112
OliI	CACNNNNGTG	1 cut(s)	180
PctI	GAATGC	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	145
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
RseI	CAYNNNNRTG	1 cut(s)	180
SaqAI	TTAA	4 cut(s)	120, 129, 165, 222
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	1 cut(s)	72
SetI	ASST	2 cut(s)	148, 172
SfaNI	GCATC	1 cut(s)	225
SmiMI	CAYNNNNRTG	1 cut(s)	180
SmlI	CTYRAG	2 cut(s)	59, 119
SmoI	CTYRAG	2 cut(s)	59, 119
SspMI	CTAG	2 cut(s)	95, 171
TaqI	TCGA	1 cut(s)	75
Tru1I	TTAA	4 cut(s)	120, 129, 165, 222
Tru9I	TTAA	4 cut(s)	120, 129, 165, 222
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	2 cut(s)	12, 112
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	2 cut(s)	12, 112
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	187
Vha464I	CTTAAG	1 cut(s)	119
XspI	CTAG	2 cut(s)	95, 171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.