Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001933

Physical Location & Seq

Genomic Coordinates Reverse (-)

18979643 .. 18980739

Gene Structure 1097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1171900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGTGGAATGAGTCGTTCCAGGGGGAAGAGGTGGAACGAAAAATCAGCCAAATTTCGTCCCATGGGACAACCCGTTCCACAGTTTTTAGACGCACCAAACGTGGGACGGAACGGCTCGTCCCGCTCCGTCCCGTCCCGTCCCACGTACCAAACGGCAAAGTGGCACTAGTCACTGGCGGAGCCAGCGGCATAGGGGAGTTCACAGCAAGAGTCTTCACGAAACATGGAGCTAAAGTTGTGATTGCAGATGTGCAAGACGACTTGGGTGAATCTGTTTGCACAGATCTAAATTCTTCATCCGCTTCCTTCGTCCATTGCGATGTAACAAAAGAAGAAGACATCGAAAATGCGGTTAATACAGCCACAAGCAAGTATGGAAAGCTAGACATCATGTTCAACAATGCAGGCATAGCTGGCACACCCAAACCCAACATCCTTGACAATGACAAGGCTGAATTTGAGCAAGTGCTTAGTGTAAATCTAGTCGGATCATTTTTGGGGATTAAACACGCAGCTCGCGTGATGATCCCAGCAGGCCAAGGCAGCATAATCAACACTGCTAGTGTTTGTTCTACCATAGGCGGAGGTGCTTCACATGCCTACACAAGTTCGAAGCATGGGGTAGTGGGGCTAATGAAAAACGCGGCCGTTGAGCTTGGACAATACGGTATTCGTGTAAATTGCGTGTCACCATACTTAGTTGCAACGCCGTTGGCGAAGGACTTCTTCAATCTTGATGACGATGGAGTGCATGGAGTTTATTCCAACCTTAAAGGTAAGGTTCTTAGGCCAGAAGATATTGCTGAGGCTGCTCTTTACTTGGGTAGTGATGAGTCAAAGTATGTTAGTGGGCATAATCTTTTGGTGGATGGAGGTTATAGTATTGTGAACCCAAGGTTTTGTATGTTTGAGAAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

307

Amino Acids

32.67

Weight (kDa)

6.31

Isoelectric Point (pI)

26.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	53 - 242	4.2e-54	short chain dehydrogenase
KR	PF08659	55 - 202	1.5e-07	KR domain
adh_short_C2	PF13561	61 - 294	1.6e-65	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23771 FvH4_3g25650 FvH4_3g25660
malus_domestica	MD11G1171900.v1.1 MD11G1172300.v1.1 MD12G1032600.v1.1
prunus_persica	Prupe.6G138400_v2.0.a1 Prupe.6G138600_v2.0.a1 Prupe.6G138700_v2.0.a1 Prupe.6G138800_v2.0.a1
pyrus_communis	pycom11g14280 pycom11g14340 pycom11g14350 pycom11g14410
rosa_chinensis	RchiOBHm_Chr5g0047121 RchiOBHm_Chr5g0047151
rosa_laevigata	RLG00000034467 RLG00000034469 RLG00000034471 RLG00000034472 RLG00000034473
rosa_multiflora	Rmu_co8232047.1_g000001 Rmu_co8263687.1_g000001 Rmu_sc0001565.1_g000029 Rmu_sc0003154.1_g000029 Rmu_sc0005145.1_g000014 Rmu_sc0019535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034260 Rroxscaffold_1G00034290 Rroxscaffold_1G00034310
rosa_rugosa	Rorug05G0234100 Rorug05G0234200 Rorug05G0234400 Rorug05G0234500 Rorug05G0234700
rosa_samantha	Rh5AG313100 Rh5AG313200 Rh5BG322100 Rh5CG348500 Rh5CG348600 Rh5CG348700 Rh5CG348900 Rh5CG349100 Rh5DG333100 Rh5DG333200
rosa_wichuraiana	Rw5G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	124
AccII	CGCG	2 cut(s)	519, 644
AciI	CCGC	7 cut(s)	122, 177, 186, 300, 350, 582, 644
AclWI	GGATC	2 cut(s)	496, 520
AcoI	YGGCCR	1 cut(s)	645
AcsI	RAATTY	3 cut(s)	51, 289, 455
AfaI	GTAC	1 cut(s)	147
AfiI	CCNNNNNNNGG	1 cut(s)	102
AgsI	TTSAA	2 cut(s)	397, 730
AhlI	ACTAGT	1 cut(s)	166
AjnI	CCWGG	1 cut(s)	18
AloI	GAACNNNNNNTCC	4 cut(s)	58, 90, 102, 134
AluBI	AGCT	5 cut(s)	230, 382, 413, 515, 655
AluI	AGCT	5 cut(s)	230, 382, 413, 515, 655
AlwI	GGATC	2 cut(s)	496, 520
AoxI	GGCC	3 cut(s)	535, 645, 788
ApeKI	GCWGC	3 cut(s)	512, 543, 809
ApoI	RAATTY	3 cut(s)	51, 289, 455
Asp700I	GAANNNNTTC	1 cut(s)	722
AsuHPI	GGTGA	2 cut(s)	278, 681
AsuII	TTCGAA	1 cut(s)	611
BbsI	GAAGAC	2 cut(s)	205, 342
BbvCI	CCTCAGC	1 cut(s)	804
BbvI	GCAGC	3 cut(s)	524, 555, 796
BccI	CCATC	2 cut(s)	737, 863
BceAI	ACGGC	4 cut(s)	128, 169, 632, 694
BciT130I	CCWGG	1 cut(s)	20
BcuI	ACTAGT	1 cut(s)	166
BfaI	CTAG	4 cut(s)	167, 383, 482, 561
BglII	AGATCT	1 cut(s)	283
BisI	GCNGC	5 cut(s)	187, 513, 544, 645, 810
BlsI	GCNGC	5 cut(s)	188, 514, 545, 646, 811
Bme1390I	CCNGG	1 cut(s)	20
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	20
BpiI	GAAGAC	2 cut(s)	205, 342
Bpu10I	CCTNAGC	1 cut(s)	804
Bpu14I	TTCGAA	1 cut(s)	611
BsaAI	YACGTR	1 cut(s)	145
BsaJI	CCNNGG	4 cut(s)	19, 61, 538, 893
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bsc4I	CCNNNNNNNGG	1 cut(s)	102
Bse1I	ACTGG	1 cut(s)	178
Bse3DI	GCAATG	1 cut(s)	313
BseBI	CCWGG	1 cut(s)	20
BseDI	CCNNGG	4 cut(s)	19, 61, 538, 893
BseGI	GGATG	3 cut(s)	296, 432, 874
BseLI	CCNNNNNNNGG	1 cut(s)	102
BseMI	GCAATG	1 cut(s)	313
BseMII	CTCAG	1 cut(s)	795
BseNI	ACTGG	1 cut(s)	178
BseX3I	CGGCCG	1 cut(s)	645
BseXI	GCAGC	3 cut(s)	524, 555, 796
BseYI	CCCAGC	1 cut(s)	529
Bsh1236I	CGCG	2 cut(s)	519, 644
Bsh1285I	CGRYCG	1 cut(s)	648
BshFI	GGCC	3 cut(s)	537, 647, 790
BsiEI	CGRYCG	1 cut(s)	648
BslFI	GGGAC	7 cut(s)	43, 79, 104, 114, 118, 119, 124
BslI	CCNNNNNNNGG	1 cut(s)	102
BsmFI	GGGAC	7 cut(s)	43, 79, 104, 114, 118, 119, 124
BsnI	GGCC	3 cut(s)	537, 647, 790
Bsp119I	TTCGAA	1 cut(s)	611
Bsp143I	GATC	3 cut(s)	283, 488, 525
Bsp19I	CCATGG	1 cut(s)	61
BspACI	CCGC	7 cut(s)	122, 177, 186, 300, 350, 582, 644
BspANI	GGCC	3 cut(s)	537, 647, 790
BspCNI	CTCAG	1 cut(s)	796
BspFNI	CGCG	2 cut(s)	519, 644
BspLI	GGNNCC	1 cut(s)	181
BspPI	GGATC	2 cut(s)	496, 520
BspT104I	TTCGAA	1 cut(s)	611
BsrBI	CCGCTC	1 cut(s)	124
BsrDI	GCAATG	1 cut(s)	313
BsrI	ACTGG	1 cut(s)	178
BssECI	CCNNGG	4 cut(s)	19, 61, 538, 893
BssMI	GATC	3 cut(s)	283, 488, 525
BssT1I	CCWWGG	3 cut(s)	61, 538, 893
Bst2UI	CCWGG	1 cut(s)	20
Bst4CI	ACNGT	2 cut(s)	82, 668
Bst6I	CTCTTC	1 cut(s)	21
BstBAI	YACGTR	1 cut(s)	145
BstBI	TTCGAA	1 cut(s)	611
BstC8I	GCNNGC	5 cut(s)	184, 406, 415, 517, 535
BstDEI	CTNAG	4 cut(s)	470, 697, 785, 804
BstDSI	CCRYGG	1 cut(s)	61
BstF5I	GGATG	3 cut(s)	296, 432, 874
BstFNI	CGCG	2 cut(s)	519, 644
BstKTI	GATC	3 cut(s)	286, 491, 528
BstMBI	GATC	3 cut(s)	283, 488, 525
BstMCI	CGRYCG	1 cut(s)	648
BstMWI	GCNNNNNNNGC	7 cut(s)	121, 183, 410, 414, 543, 596, 809
BstNI	CCWGG	1 cut(s)	20
BstNSI	RCATGY	1 cut(s)	599
BstSCI	CCNGG	1 cut(s)	18
BstUI	CGCG	2 cut(s)	519, 644
BstV1I	GCAGC	3 cut(s)	524, 555, 796
BstV2I	GAAGAC	2 cut(s)	205, 342
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BstZI	CGGCCG	1 cut(s)	645
BsuRI	GGCC	3 cut(s)	537, 647, 790
BtgI	CCRYGG	1 cut(s)	61
BtgZI	GCGATG	1 cut(s)	333
BtsCI	GGATG	3 cut(s)	296, 432, 874
BtsI	GCAGTG	1 cut(s)	555
BtsIMutI	CAGTG	2 cut(s)	171, 555
Cac8I	GCNNGC	5 cut(s)	184, 406, 415, 517, 535
CseI	GACGC	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	146
CviAII	CATG	6 cut(s)	62, 224, 391, 596, 617, 752
CviQI	GTAC	1 cut(s)	146
DdeI	CTNAG	4 cut(s)	470, 697, 785, 804
DpnI	GATC	3 cut(s)	285, 490, 527
DpnII	GATC	3 cut(s)	283, 488, 525
EaeI	YGGCCR	1 cut(s)	645
EagI	CGGCCG	1 cut(s)	645
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
EciI	GGCGGA	2 cut(s)	192, 597
EclXI	CGGCCG	1 cut(s)	645
Eco130I	CCWWGG	3 cut(s)	61, 538, 893
Eco52I	CGGCCG	1 cut(s)	645
EcoRII	CCWGG	1 cut(s)	18
EcoT14I	CCWWGG	3 cut(s)	61, 538, 893
ErhI	CCWWGG	3 cut(s)	61, 538, 893
FaeI	CATG	6 cut(s)	65, 227, 394, 599, 620, 755
FalI	AAGNNNNNCTT	2 cut(s)	710, 742
FaqI	GGGAC	7 cut(s)	43, 79, 104, 114, 118, 119, 124
FatI	CATG	6 cut(s)	61, 223, 390, 595, 616, 751
FauI	CCCGC	1 cut(s)	129
Fnu4HI	GCNGC	5 cut(s)	187, 513, 544, 645, 810
FokI	GGATG	3 cut(s)	283, 419, 881
Fsp4HI	GCNGC	5 cut(s)	187, 513, 544, 645, 810
FspBI	CTAG	4 cut(s)	167, 383, 482, 561
GluI	GCNGC	5 cut(s)	187, 513, 544, 645, 810
GsaI	CCCAGC	1 cut(s)	533
HaeIII	GGCC	3 cut(s)	537, 647, 790
HgaI	GACGC	1 cut(s)	99
Hin1II	CATG	6 cut(s)	65, 227, 394, 599, 620, 755
HinfI	GANTC	4 cut(s)	11, 210, 269, 833
HphI	GGTGA	2 cut(s)	278, 681
Hpy166II	GTNNAC	2 cut(s)	201, 889
Hpy188I	TCNGA	1 cut(s)	488
Hpy188III	TCNNGA	3 cut(s)	217, 734, 918
Hpy8I	GTNNAC	2 cut(s)	201, 889
HpyAV	CCTTC	2 cut(s)	316, 712
HpyCH4III	ACNGT	2 cut(s)	82, 668
HpyCH4IV	ACGT	2 cut(s)	100, 144
HpyCH4V	TGCA	6 cut(s)	245, 253, 279, 404, 704, 751
HpyF10VI	GCNNNNNNNGC	7 cut(s)	121, 183, 410, 414, 543, 596, 809
HpyF3I	CTNAG	4 cut(s)	470, 697, 785, 804
HpySE526I	ACGT	2 cut(s)	100, 144
Hsp92II	CATG	6 cut(s)	65, 227, 394, 599, 620, 755
Kzo9I	GATC	3 cut(s)	283, 488, 525
LmnI	GCTCC	3 cut(s)	129, 179, 227
LpnPI	CCDG	9 cut(s)	5, 32, 159, 196, 390, 399, 519, 543, 804
Lsp1109I	GCAGC	3 cut(s)	524, 555, 796
MaeI	CTAG	4 cut(s)	167, 383, 482, 561
MaeII	ACGT	2 cut(s)	100, 144
MaeIII	GTNAC	3 cut(s)	169, 322, 687
MalI	GATC	3 cut(s)	285, 490, 527
MbiI	CCGCTC	1 cut(s)	124
MboI	GATC	3 cut(s)	283, 488, 525
MboII	GAAGA	7 cut(s)	38, 205, 285, 344, 347, 718, 806
MflI	RGATCY	1 cut(s)	283
MluCI	AATT	4 cut(s)	51, 289, 455, 679
MlyI	GAGTC	3 cut(s)	20, 219, 842
MmeI	TCCRAC	2 cut(s)	466, 789
MnlI	CCTC	4 cut(s)	22, 578, 799, 866
MroXI	GAANNNNTTC	1 cut(s)	722
MseI	TTAA	3 cut(s)	354, 504, 771
MslI	CAYNNNNRTG	1 cut(s)	318
MspA1I	CMGCKG	1 cut(s)	186
MspR9I	CCNGG	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	20
MvnI	CGCG	2 cut(s)	519, 644
MwoI	GCNNNNNNNGC	7 cut(s)	121, 183, 410, 414, 543, 596, 809
NcoI	CCATGG	1 cut(s)	61
NdeII	GATC	3 cut(s)	283, 488, 525
NlaIII	CATG	6 cut(s)	65, 227, 394, 599, 620, 755
NlaIV	GGNNCC	1 cut(s)	181
NmuCI	GTSAC	2 cut(s)	169, 687
NspI	RCATGY	1 cut(s)	599
NspV	TTCGAA	1 cut(s)	611
PcsI	WCGNNNNNNNCGW	4 cut(s)	97, 315, 516, 713
PdmI	GAANNNNTTC	1 cut(s)	722
PfeI	GAWTC	1 cut(s)	269
PkrI	GCNGC	5 cut(s)	188, 514, 545, 646, 811
PleI	GAGTC	3 cut(s)	19, 218, 841
PpsI	GAGTC	3 cut(s)	19, 218, 841
Ppu21I	YACGTR	1 cut(s)	145
Psp6I	CCWGG	1 cut(s)	18
PspFI	CCCAGC	1 cut(s)	529
PspGI	CCWGG	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	181
PsuI	RGATCY	1 cut(s)	283
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
RseI	CAYNNNNRTG	1 cut(s)	318
SaqAI	TTAA	3 cut(s)	354, 504, 771
SatI	GCNGC	5 cut(s)	187, 513, 544, 645, 810
Sau3AI	GATC	3 cut(s)	283, 488, 525
SchI	GAGTC	3 cut(s)	20, 219, 842
ScrFI	CCNGG	1 cut(s)	20
SfuI	TTCGAA	1 cut(s)	611
SmiMI	CAYNNNNRTG	1 cut(s)	318
SpeI	ACTAGT	1 cut(s)	166
Sse9I	AATT	4 cut(s)	51, 289, 455, 679
SsiI	CCGC	7 cut(s)	122, 177, 186, 300, 350, 582, 644
SspMI	CTAG	4 cut(s)	167, 383, 482, 561
StyD4I	CCNGG	1 cut(s)	18
StyI	CCWWGG	3 cut(s)	61, 538, 893
TaaI	ACNGT	2 cut(s)	82, 668
TaiI	ACGT	2 cut(s)	103, 147
TaqI	TCGA	2 cut(s)	342, 611
TasI	AATT	4 cut(s)	51, 289, 455, 679
TauI	GCSGC	2 cut(s)	189, 647
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	3 cut(s)	354, 504, 771
Tru9I	TTAA	3 cut(s)	354, 504, 771
TscAI	CASTG	2 cut(s)	178, 562
TseFI	GTSAC	2 cut(s)	169, 687
TseI	GCWGC	3 cut(s)	512, 543, 809
Tsp45I	GTSAC	2 cut(s)	169, 687
TspDTI	ATGAA	2 cut(s)	285, 650
TspGWI	ACGGA	2 cut(s)	116, 122
TspRI	CASTG	2 cut(s)	178, 562
XapI	RAATTY	3 cut(s)	51, 289, 455
XceI	RCATGY	1 cut(s)	599
XmnI	GAANNNNTTC	1 cut(s)	722
XspI	CTAG	4 cut(s)	167, 383, 482, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.