Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001933

Physical Location & Seq

Genomic Coordinates Forward (+)

14290945 .. 14292625

Gene Structure 1681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g14340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGGAAGCTTCTCATTAGTCTCAGCCGCTGCTTCTGCTGCAAGAAGGCTTGAAGGCAAAGTGGCACTAATCACTGGCGGAGCCAGCGGCATAGGGGAGTCCACAGCAAGAGTCTTCTCGAAACATGGAGCTAAAGTTGTGATTGCAGATGTGCAAGACGACTTGGGTGAATCTGTTTGCACACATCTAAATTTTTCATCCGTTTCCTTCGTCCATTGCGATGTAACAAAAGAAGAAGACATCGAAAATGCAGTTAAAACAGCCACAAGCAAGTATGGAAAGCTAGACATCATGATCAACAATGCAGGCATAGGTGGCACACCCAAACCCAACATCCTCGACAATGACAAGGCTGAATTTGAGCAAGTGCTTAGTGTAAATCTAGTCGGATCATTTTTGGGGATTAAACACGCAGCTCGCGTGATCGATCCCAGCAGGCCAAGGCAGCATAATCAACACTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

155

Amino Acids

16.26

Weight (kDa)

6.58

Isoelectric Point (pI)

27.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	20 - 141	5.9e-31	short chain dehydrogenase
KR	PF08659	22 - 130	2.5e-08	KR domain
adh_short_C2	PF13561	28 - 142	9.6e-28	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23771 FvH4_3g25650 FvH4_3g25660
malus_domestica	MD11G1171900.v1.1 MD11G1172300.v1.1 MD12G1032600.v1.1
prunus_persica	Prupe.6G138400_v2.0.a1 Prupe.6G138600_v2.0.a1 Prupe.6G138700_v2.0.a1 Prupe.6G138800_v2.0.a1
pyrus_communis	pycom11g14280 pycom11g14340 pycom11g14350 pycom11g14410
rosa_chinensis	RchiOBHm_Chr5g0047121 RchiOBHm_Chr5g0047151
rosa_laevigata	RLG00000034467 RLG00000034469 RLG00000034471 RLG00000034472 RLG00000034473
rosa_multiflora	Rmu_co8232047.1_g000001 Rmu_co8263687.1_g000001 Rmu_sc0001565.1_g000029 Rmu_sc0003154.1_g000029 Rmu_sc0005145.1_g000014 Rmu_sc0019535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034260 Rroxscaffold_1G00034290 Rroxscaffold_1G00034310
rosa_rugosa	Rorug05G0234100 Rorug05G0234200 Rorug05G0234400 Rorug05G0234500 Rorug05G0234700
rosa_samantha	Rh5AG313100 Rh5AG313200 Rh5BG322100 Rh5CG348500 Rh5CG348600 Rh5CG348700 Rh5CG348900 Rh5CG349100 Rh5DG333100 Rh5DG333200
rosa_wichuraiana	Rw5G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	420
AciI	CCGC	3 cut(s)	27, 78, 87
AclWI	GGATC	2 cut(s)	397, 422
AcsI	RAATTY	2 cut(s)	190, 356
AgsI	TTSAA	1 cut(s)	53
AluBI	AGCT	4 cut(s)	9, 131, 283, 416
AluI	AGCT	4 cut(s)	9, 131, 283, 416
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	2 cut(s)	397, 422
AlwNI	CAGNNNCTG	1 cut(s)	29
AoxI	GGCC	1 cut(s)	437
ApeKI	GCWGC	4 cut(s)	29, 38, 413, 445
ApoI	RAATTY	2 cut(s)	190, 356
AsuHPI	GGTGA	1 cut(s)	179
BbsI	GAAGAC	2 cut(s)	106, 243
BbvI	GCAGC	4 cut(s)	16, 25, 425, 457
BclI	TGATCA	1 cut(s)	294
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	3 cut(s)	284, 383, 463
BisI	GCNGC	6 cut(s)	27, 30, 39, 88, 414, 446
BlsI	GCNGC	6 cut(s)	28, 31, 40, 89, 415, 447
BmiI	GGNNCC	1 cut(s)	82
BpiI	GAAGAC	2 cut(s)	106, 243
Bsa29I	ATCGAT	1 cut(s)	426
BsaJI	CCNNGG	1 cut(s)	440
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bse1I	ACTGG	1 cut(s)	79
Bse3DI	GCAATG	1 cut(s)	214
BseCI	ATCGAT	1 cut(s)	426
BseDI	CCNNGG	1 cut(s)	440
BseGI	GGATG	2 cut(s)	197, 333
BseMI	GCAATG	1 cut(s)	214
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	1 cut(s)	79
BseXI	GCAGC	4 cut(s)	16, 25, 425, 457
BseYI	CCCAGC	1 cut(s)	431
Bsh1236I	CGCG	1 cut(s)	420
BshFI	GGCC	1 cut(s)	439
BshVI	ATCGAT	1 cut(s)	426
BsmAI	GTCTC	1 cut(s)	25
BsnI	GGCC	1 cut(s)	439
Bsp143I	GATC	4 cut(s)	294, 389, 423, 427
BspACI	CCGC	3 cut(s)	27, 78, 87
BspANI	GGCC	1 cut(s)	439
BspCNI	CTCAG	1 cut(s)	35
BspDI	ATCGAT	1 cut(s)	426
BspFNI	CGCG	1 cut(s)	420
BspHI	TCATGA	1 cut(s)	291
BspLI	GGNNCC	1 cut(s)	82
BspPI	GGATC	2 cut(s)	397, 422
BsrDI	GCAATG	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	440
BssMI	GATC	4 cut(s)	294, 389, 423, 427
BssT1I	CCWWGG	1 cut(s)	440
BstC8I	GCNNGC	4 cut(s)	85, 307, 418, 437
BstDEI	CTNAG	2 cut(s)	22, 371
BstF5I	GGATG	2 cut(s)	197, 333
BstFNI	CGCG	1 cut(s)	420
BstKTI	GATC	4 cut(s)	297, 392, 426, 430
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	4 cut(s)	294, 389, 423, 427
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 38, 84, 315, 445
BstUI	CGCG	1 cut(s)	420
BstV1I	GCAGC	4 cut(s)	16, 25, 425, 457
BstV2I	GAAGAC	2 cut(s)	106, 243
Bsu15I	ATCGAT	1 cut(s)	426
BsuRI	GGCC	1 cut(s)	439
BsuTUI	ATCGAT	1 cut(s)	426
BtgZI	GCGATG	1 cut(s)	234
BtsCI	GGATG	2 cut(s)	197, 333
BtsI	GCAGTG	1 cut(s)	457
BtsIMutI	CAGTG	2 cut(s)	72, 457
Cac8I	GCNNGC	4 cut(s)	85, 307, 418, 437
CaiI	CAGNNNCTG	1 cut(s)	29
CciI	TCATGA	1 cut(s)	291
ClaI	ATCGAT	1 cut(s)	426
CviAII	CATG	2 cut(s)	125, 292
DdeI	CTNAG	2 cut(s)	22, 371
DpnI	GATC	4 cut(s)	296, 391, 425, 429
DpnII	GATC	4 cut(s)	294, 389, 423, 427
EciI	GGCGGA	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	440
EcoT14I	CCWWGG	1 cut(s)	440
ErhI	CCWWGG	1 cut(s)	440
FaeI	CATG	2 cut(s)	128, 295
FaiI	YATR	6 cut(s)	92, 126, 276, 293, 311, 450
FatI	CATG	2 cut(s)	124, 291
FbaI	TGATCA	1 cut(s)	294
Fnu4HI	GCNGC	6 cut(s)	27, 30, 39, 88, 414, 446
FokI	GGATG	2 cut(s)	184, 320
Fsp4HI	GCNGC	6 cut(s)	27, 30, 39, 88, 414, 446
FspBI	CTAG	3 cut(s)	284, 383, 463
GluI	GCNGC	6 cut(s)	27, 30, 39, 88, 414, 446
GsaI	CCCAGC	1 cut(s)	435
HaeIII	GGCC	1 cut(s)	439
Hin1II	CATG	2 cut(s)	128, 295
HindIII	AAGCTT	1 cut(s)	7
HinfI	GANTC	3 cut(s)	98, 111, 170
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	1 cut(s)	102
Hpy188I	TCNGA	1 cut(s)	389
Hpy188III	TCNNGA	2 cut(s)	118, 292
Hpy8I	GTNNAC	1 cut(s)	102
HpyAV	CCTTC	3 cut(s)	39, 47, 217
HpyCH4V	TGCA	6 cut(s)	41, 146, 154, 180, 251, 305
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 38, 84, 315, 445
HpyF3I	CTNAG	2 cut(s)	22, 371
Hsp92II	CATG	2 cut(s)	128, 295
Ksp22I	TGATCA	1 cut(s)	294
Kzo9I	GATC	4 cut(s)	294, 389, 423, 427
LmnI	GCTCC	2 cut(s)	80, 128
LpnPI	CCDG	5 cut(s)	60, 97, 291, 421, 445
Lsp1109I	GCAGC	4 cut(s)	16, 25, 425, 457
MaeI	CTAG	3 cut(s)	284, 383, 463
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	4 cut(s)	296, 391, 425, 429
MboI	GATC	4 cut(s)	294, 389, 423, 427
MboII	GAAGA	3 cut(s)	106, 245, 248
MluCI	AATT	2 cut(s)	190, 356
MlyI	GAGTC	2 cut(s)	107, 120
MmeI	TCCRAC	1 cut(s)	367
MnlI	CCTC	1 cut(s)	347
MseI	TTAA	2 cut(s)	255, 405
MslI	CAYNNNNRTG	1 cut(s)	219
MspA1I	CMGCKG	2 cut(s)	29, 87
MvnI	CGCG	1 cut(s)	420
MwoI	GCNNNNNNNGC	5 cut(s)	35, 38, 84, 315, 445
NdeII	GATC	4 cut(s)	294, 389, 423, 427
NlaIII	CATG	2 cut(s)	128, 295
NlaIV	GGNNCC	1 cut(s)	82
PagI	TCATGA	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	2 cut(s)	216, 417
PfeI	GAWTC	1 cut(s)	170
PkrI	GCNGC	6 cut(s)	28, 31, 40, 89, 415, 447
PleI	GAGTC	2 cut(s)	106, 119
PpsI	GAGTC	2 cut(s)	106, 119
PspFI	CCCAGC	1 cut(s)	431
PspN4I	GGNNCC	1 cut(s)	82
PstNI	CAGNNNCTG	1 cut(s)	29
RseI	CAYNNNNRTG	1 cut(s)	219
SaqAI	TTAA	2 cut(s)	255, 405
SatI	GCNGC	6 cut(s)	27, 30, 39, 88, 414, 446
Sau3AI	GATC	4 cut(s)	294, 389, 423, 427
SchI	GAGTC	2 cut(s)	107, 120
SetI	ASST	5 cut(s)	11, 133, 285, 316, 418
SmiMI	CAYNNNNRTG	1 cut(s)	219
Sse9I	AATT	2 cut(s)	190, 356
SsiI	CCGC	3 cut(s)	27, 78, 87
SspMI	CTAG	3 cut(s)	284, 383, 463
StyI	CCWWGG	1 cut(s)	440
TaqI	TCGA	4 cut(s)	119, 243, 339, 426
TasI	AATT	2 cut(s)	190, 356
TauI	GCSGC	2 cut(s)	29, 90
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	2 cut(s)	255, 405
Tru9I	TTAA	2 cut(s)	255, 405
TscAI	CASTG	2 cut(s)	79, 464
TseI	GCWGC	4 cut(s)	29, 38, 413, 445
TspDTI	ATGAA	1 cut(s)	186
TspGWI	ACGGA	1 cut(s)	190
TspRI	CASTG	2 cut(s)	79, 464
XapI	RAATTY	2 cut(s)	190, 356
XspI	CTAG	3 cut(s)	284, 383, 463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.