FvH4_3g25660

Secoisolariciresinol dehydrogenase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001933
Physical Location & Seq
Reverse (-)
18544652 .. 18547044
2393 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g25660.t1

Sequence Viewer

Length: 312 bp
ATGACGCTTTCTGATGATCAGGAGAGAACCGCTTGGCTTGTGACACTCTTTTCGCATGAGCAACTTACTACTACTGACGTCCGAGCTAGACAAAGTGATTCTCAGCGAGATCAAAAAGCATCTCTAGATGCATGTGTGTTGGCTATACCTCAAACTTACAAAGAACAAGCTGAGAGGGTGGTTGAGGGAAACGCTAGCTCAAGGCTTGAAGATAAGGTAGCACTGATCACCGGCGGCTCCAGCGGCATCGGAGAATCCACCGCCAGACTCTTCTCCAAACACGACGCTAAAGTCGTGATCGCCGACGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

104

Amino Acids

11.25

Weight (kDa)

5.06

Isoelectric Point (pI)

34.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 72 - 102 4.8e-06 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 290
AatII GACGTC 1 cut(s) 81
AciI CCGC 4 cut(s) 30, 234, 243, 261
AcyI GRCGYC 1 cut(s) 78
AflIII ACRYGT 1 cut(s) 306
AgsI TTSAA 1 cut(s) 209
AjiI CACGTC 1 cut(s) 307
AluBI AGCT 3 cut(s) 86, 170, 198
AluI AGCT 3 cut(s) 86, 170, 198
ArsI GACNNNNNNTTYG 2 cut(s) 34, 66
AsuHPI GGTGA 1 cut(s) 220
AsuNHI GCTAGC 1 cut(s) 194
BclI TGATCA 2 cut(s) 16, 225
BfaI CTAG 3 cut(s) 87, 125, 195
BisI GCNGC 2 cut(s) 235, 244
BlsI GCNGC 2 cut(s) 236, 245
BmgBI CACGTC 1 cut(s) 307
BmiI GGNNCC 1 cut(s) 238
BmsI GCATC 3 cut(s) 118, 128, 255
BmtI GCTAGC 1 cut(s) 198
BpmI CTGGAG 1 cut(s) 223
BpuEI CTTGAG 1 cut(s) 184
BsaHI GRCGYC 1 cut(s) 78
Bse118I RCCGGY 1 cut(s) 230
BseMII CTCAG 2 cut(s) 116, 162
BsiSI CCGG 1 cut(s) 231
Bsp143I GATC 4 cut(s) 16, 109, 225, 297
BspACI CCGC 4 cut(s) 30, 234, 243, 261
BspCNI CTCAG 2 cut(s) 115, 163
BspLI GGNNCC 1 cut(s) 238
BspOI GCTAGC 1 cut(s) 198
BsrFI RCCGGY 1 cut(s) 230
BssAI RCCGGY 1 cut(s) 230
BssMI GATC 4 cut(s) 16, 109, 225, 297
BssNI GRCGYC 1 cut(s) 78
Bst6I CTCTTC 1 cut(s) 275
BstACI GRCGYC 1 cut(s) 78
BstC8I GCNNGC 1 cut(s) 196
BstDEI CTNAG 2 cut(s) 102, 171
BstKTI GATC 4 cut(s) 19, 112, 228, 300
BstMBI GATC 4 cut(s) 16, 109, 225, 297
BstMWI GCNNNNNNNGC 2 cut(s) 240, 243
BstNSI RCATGY 1 cut(s) 135
BtrI CACGTC 1 cut(s) 307
BtsIMutI CAGTG 1 cut(s) 221
Cac8I GCNNGC 1 cut(s) 196
Cfr10I RCCGGY 1 cut(s) 230
CseI GACGC 2 cut(s) 13, 293
CviAII CATG 2 cut(s) 56, 132
CviJI RGCY 7 cut(s) 37, 86, 143, 170, 198, 205, 237
CviKI_1 RGCY 7 cut(s) 37, 86, 143, 170, 198, 205, 237
DdeI CTNAG 2 cut(s) 102, 171
DpnI GATC 4 cut(s) 18, 111, 227, 299
DpnII GATC 4 cut(s) 16, 109, 225, 297
DrdI GACNNNNNNGTC 1 cut(s) 290
DseDI GACNNNNNNGTC 1 cut(s) 290
Eam1104I CTCTTC 1 cut(s) 275
EarI CTCTTC 1 cut(s) 275
EcoT22I ATGCAT 1 cut(s) 133
FaeI CATG 2 cut(s) 59, 135
FaiI YATR 3 cut(s) 57, 133, 146
FatI CATG 2 cut(s) 55, 131
FbaI TGATCA 2 cut(s) 16, 225
Fnu4HI GCNGC 2 cut(s) 235, 244
Fsp4HI GCNGC 2 cut(s) 235, 244
FspBI CTAG 3 cut(s) 87, 125, 195
GluI GCNGC 2 cut(s) 235, 244
GsuI CTGGAG 1 cut(s) 223
HapII CCGG 1 cut(s) 231
HgaI GACGC 2 cut(s) 13, 293
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 2 cut(s) 59, 135
HinfI GANTC 3 cut(s) 98, 254, 267
HpaII CCGG 1 cut(s) 231
HphI GGTGA 1 cut(s) 220
Hpy188I TCNGA 3 cut(s) 13, 83, 251
Hpy188III TCNNGA 3 cut(s) 20, 125, 295
Hpy99I CGWCG 2 cut(s) 287, 308
HpyCH4IV ACGT 2 cut(s) 78, 306
HpyCH4V TGCA 1 cut(s) 131
HpyF10VI GCNNNNNNNGC 2 cut(s) 240, 243
HpyF3I CTNAG 2 cut(s) 102, 171
HpySE526I ACGT 2 cut(s) 78, 306
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 2 cut(s) 59, 135
Ksp22I TGATCA 2 cut(s) 16, 225
Kzo9I GATC 4 cut(s) 16, 109, 225, 297
LmnI GCTCC 1 cut(s) 242
LpnPI CCDG 4 cut(s) 5, 244, 253, 277
LweI GCATC 3 cut(s) 118, 128, 255
MaeI CTAG 3 cut(s) 87, 125, 195
MaeII ACGT 2 cut(s) 78, 306
MaeIII GTNAC 1 cut(s) 40
MalI GATC 4 cut(s) 18, 111, 227, 299
MboI GATC 4 cut(s) 16, 109, 225, 297
MboII GAAGA 2 cut(s) 221, 262
MlyI GAGTC 1 cut(s) 261
MnlI CCTC 3 cut(s) 159, 168, 178
Mph1103I ATGCAT 1 cut(s) 133
MspA1I CMGCKG 1 cut(s) 243
MspI CCGG 1 cut(s) 231
MwoI GCNNNNNNNGC 2 cut(s) 240, 243
NdeII GATC 4 cut(s) 16, 109, 225, 297
NheI GCTAGC 1 cut(s) 194
NlaIII CATG 2 cut(s) 59, 135
NlaIV GGNNCC 1 cut(s) 238
NmuCI GTSAC 1 cut(s) 40
NsiI ATGCAT 1 cut(s) 133
NspI RCATGY 1 cut(s) 135
PcsI WCGNNNNNNNCGW 2 cut(s) 291, 300
PfeI GAWTC 2 cut(s) 98, 254
PkrI GCNGC 2 cut(s) 236, 245
PleI GAGTC 1 cut(s) 261
PpsI GAGTC 1 cut(s) 261
PspN4I GGNNCC 1 cut(s) 238
SatI GCNGC 2 cut(s) 235, 244
Sau3AI GATC 4 cut(s) 16, 109, 225, 297
SchI GAGTC 1 cut(s) 261
SetI ASST 7 cut(s) 81, 88, 151, 172, 200, 219, 309
SfaNI GCATC 3 cut(s) 118, 128, 255
SgrAI CRCCGGYG 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 199
SmoI CTYRAG 1 cut(s) 199
SsiI CCGC 4 cut(s) 30, 234, 243, 261
SspMI CTAG 3 cut(s) 87, 125, 195
TaiI ACGT 2 cut(s) 81, 309
TauI GCSGC 2 cut(s) 237, 246
TfiI GAWTC 2 cut(s) 98, 254
TscAI CASTG 1 cut(s) 228
TseFI GTSAC 1 cut(s) 40
Tsp45I GTSAC 1 cut(s) 40
TspRI CASTG 1 cut(s) 228
XbaI TCTAGA 1 cut(s) 124
XceI RCATGY 1 cut(s) 135
XspI CTAG 3 cut(s) 87, 125, 195
ZraI GACGTC 1 cut(s) 79
Zsp2I ATGCAT 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.