Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001933

Physical Location & Seq

Genomic Coordinates Forward (+)

14326826 .. 14327634

Gene Structure 809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g14410.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGATGCTTGAAGGCAAAGTGGTACTAATCACTGGCGGAGCAAGCGCTAAAGTTGTGATTGCAGATGTGCAAGACGACTTGGGTGAATCTATTTACACAGATCTAAATTCTTCATCCACTTCCTTCGTCCATTGCGATGTAACAAAAGAAGAAGACATCGAAAATGCGGTTAATACAGCCACAAGTGGCACATCCAAACCCAACATCCTTGACAATGACAAGCGATCCCTACGATTTTTGGGGATTAAAAACGCAGCTTGCGTGATGATCCCAGCAGGCCAAGGAAGCATAATCAACACTGCTAGTGTTTGTTCTACCATAGGCGGAGGTGCTTCACATGCCTACACAAGTTCGAAGCATGGGGTAGTGGGGCTAATGAAAAACGCGGCTGTTGAGCTTGGACAATACGGTATTCGTGTAAATTGTGTGTCACCATACCTAGTTGCAACGCCGTTGGCGAAGGACTTTTTCAATCTTGATGACGATGACTCCGAGTGCATGGAGTTTATTCCAACCTTAAAGGTAAAGTTCTTAGGCCAGAAGATTTTGCTGAGGCTGCTCTTTACTTGGGTAGTGATTTGTCAAAGTATGTTAGTGGGCATAATCTTTTGGTGGATGGAGGTTTTAGTATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

212

Amino Acids

22.73

Weight (kDa)

5.0

Isoelectric Point (pI)

30.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23771 FvH4_3g25650 FvH4_3g25660
malus_domestica	MD11G1171900.v1.1 MD11G1172300.v1.1 MD12G1032600.v1.1
prunus_persica	Prupe.6G138400_v2.0.a1 Prupe.6G138600_v2.0.a1 Prupe.6G138700_v2.0.a1 Prupe.6G138800_v2.0.a1
pyrus_communis	pycom11g14280 pycom11g14340 pycom11g14350 pycom11g14410
rosa_chinensis	RchiOBHm_Chr5g0047121 RchiOBHm_Chr5g0047151
rosa_laevigata	RLG00000034467 RLG00000034469 RLG00000034471 RLG00000034472 RLG00000034473
rosa_multiflora	Rmu_co8232047.1_g000001 Rmu_co8263687.1_g000001 Rmu_sc0001565.1_g000029 Rmu_sc0003154.1_g000029 Rmu_sc0005145.1_g000014 Rmu_sc0019535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034260 Rroxscaffold_1G00034290 Rroxscaffold_1G00034310
rosa_rugosa	Rorug05G0234100 Rorug05G0234200 Rorug05G0234400 Rorug05G0234500 Rorug05G0234700
rosa_samantha	Rh5AG313100 Rh5AG313200 Rh5BG322100 Rh5CG348500 Rh5CG348600 Rh5CG348700 Rh5CG348900 Rh5CG349100 Rh5DG333100 Rh5DG333200
rosa_wichuraiana	Rw5G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	386
AciI	CCGC	4 cut(s)	36, 167, 324, 386
AclWI	GGATC	2 cut(s)	219, 262
AcsI	RAATTY	1 cut(s)	106
AfaI	GTAC	1 cut(s)	24
AfeI	AGCGCT	1 cut(s)	46
AgsI	TTSAA	2 cut(s)	11, 472
AluBI	AGCT	2 cut(s)	257, 397
AluI	AGCT	2 cut(s)	257, 397
AlwI	GGATC	2 cut(s)	219, 262
Aor51HI	AGCGCT	1 cut(s)	46
AoxI	GGCC	2 cut(s)	277, 535
ApeKI	GCWGC	2 cut(s)	254, 556
ApoI	RAATTY	1 cut(s)	106
AspLEI	GCGC	1 cut(s)	47
AsuHPI	GGTGA	2 cut(s)	95, 423
AsuII	TTCGAA	1 cut(s)	353
BbsI	GAAGAC	1 cut(s)	159
BbvCI	CCTCAGC	1 cut(s)	551
BbvI	GCAGC	2 cut(s)	266, 543
BccI	CCATC	1 cut(s)	610
BceAI	ACGGC	1 cut(s)	436
BfaI	CTAG	2 cut(s)	303, 440
BfoI	RGCGCY	1 cut(s)	48
BglII	AGATCT	1 cut(s)	100
BisI	GCNGC	3 cut(s)	255, 387, 557
BlsI	GCNGC	3 cut(s)	256, 388, 558
BpiI	GAAGAC	1 cut(s)	159
Bpu10I	CCTNAGC	1 cut(s)	551
Bpu14I	TTCGAA	1 cut(s)	353
BsaJI	CCNNGG	1 cut(s)	280
BsaXI	ACNNNNNCTCC	2 cut(s)	473, 503
Bse1I	ACTGG	1 cut(s)	37
Bse3DI	GCAATG	1 cut(s)	130
BseDI	CCNNGG	1 cut(s)	280
BseGI	GGATG	4 cut(s)	113, 191, 204, 621
BseMI	GCAATG	1 cut(s)	130
BseMII	CTCAG	1 cut(s)	542
BseNI	ACTGG	1 cut(s)	37
BseXI	GCAGC	2 cut(s)	266, 543
BseYI	CCCAGC	1 cut(s)	271
Bsh1236I	CGCG	1 cut(s)	386
BshFI	GGCC	2 cut(s)	279, 537
BsnI	GGCC	2 cut(s)	279, 537
Bsp119I	TTCGAA	1 cut(s)	353
Bsp143I	GATC	3 cut(s)	100, 224, 267
BspACI	CCGC	4 cut(s)	36, 167, 324, 386
BspANI	GGCC	2 cut(s)	279, 537
BspCNI	CTCAG	1 cut(s)	543
BspFNI	CGCG	1 cut(s)	386
BspPI	GGATC	2 cut(s)	219, 262
BspT104I	TTCGAA	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	280
BssMI	GATC	3 cut(s)	100, 224, 267
BssT1I	CCWWGG	1 cut(s)	280
Bst4CI	ACNGT	1 cut(s)	410
BstBI	TTCGAA	1 cut(s)	353
BstC8I	GCNNGC	3 cut(s)	43, 259, 277
BstDEI	CTNAG	2 cut(s)	532, 551
BstF5I	GGATG	4 cut(s)	113, 191, 204, 621
BstFNI	CGCG	1 cut(s)	386
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	3 cut(s)	103, 227, 270
BstMBI	GATC	3 cut(s)	100, 224, 267
BstMWI	GCNNNNNNNGC	4 cut(s)	42, 285, 338, 556
BstNSI	RCATGY	1 cut(s)	341
BstUI	CGCG	1 cut(s)	386
BstV1I	GCAGC	2 cut(s)	266, 543
BstV2I	GAAGAC	1 cut(s)	159
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BsuRI	GGCC	2 cut(s)	279, 537
BtgZI	GCGATG	1 cut(s)	150
BtsCI	GGATG	4 cut(s)	113, 191, 204, 621
BtsI	GCAGTG	1 cut(s)	297
BtsIMutI	CAGTG	2 cut(s)	30, 297
Cac8I	GCNNGC	3 cut(s)	43, 259, 277
CfoI	GCGC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	23
CviAII	CATG	3 cut(s)	338, 359, 499
CviJI	RGCY	8 cut(s)	179, 257, 279, 373, 389, 397, 537, 556
CviKI_1	RGCY	8 cut(s)	179, 257, 279, 373, 389, 397, 537, 556
CviQI	GTAC	1 cut(s)	23
DdeI	CTNAG	2 cut(s)	532, 551
DpnI	GATC	3 cut(s)	102, 226, 269
DpnII	GATC	3 cut(s)	100, 224, 267
EciI	GGCGGA	2 cut(s)	51, 339
Eco130I	CCWWGG	1 cut(s)	280
Eco47III	AGCGCT	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	280
ErhI	CCWWGG	1 cut(s)	280
FaeI	CATG	3 cut(s)	341, 362, 502
FaiI	YATR	8 cut(s)	290, 320, 339, 360, 436, 500, 590, 602
FatI	CATG	3 cut(s)	337, 358, 498
Fnu4HI	GCNGC	3 cut(s)	255, 387, 557
FokI	GGATG	4 cut(s)	100, 178, 191, 628
Fsp4HI	GCNGC	3 cut(s)	255, 387, 557
FspBI	CTAG	2 cut(s)	303, 440
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	3 cut(s)	255, 387, 557
GsaI	CCCAGC	1 cut(s)	275
HaeII	RGCGCY	1 cut(s)	48
HaeIII	GGCC	2 cut(s)	279, 537
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	3 cut(s)	341, 362, 502
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HinfI	GANTC	2 cut(s)	86, 488
HphI	GGTGA	2 cut(s)	95, 423
Hpy188I	TCNGA	1 cut(s)	493
Hpy188III	TCNNGA	1 cut(s)	476
HpyAV	CCTTC	3 cut(s)	5, 133, 454
HpyCH4III	ACNGT	1 cut(s)	410
HpyCH4V	TGCA	4 cut(s)	62, 70, 446, 498
HpyF10VI	GCNNNNNNNGC	4 cut(s)	42, 285, 338, 556
HpyF3I	CTNAG	2 cut(s)	532, 551
Hsp92II	CATG	3 cut(s)	341, 362, 502
HspAI	GCGC	1 cut(s)	45
Kzo9I	GATC	3 cut(s)	100, 224, 267
LmnI	GCTCC	1 cut(s)	38
LpnPI	CCDG	4 cut(s)	18, 261, 285, 551
Lsp1109I	GCAGC	2 cut(s)	266, 543
MaeI	CTAG	2 cut(s)	303, 440
MaeIII	GTNAC	2 cut(s)	139, 429
MalI	GATC	3 cut(s)	102, 226, 269
MboI	GATC	3 cut(s)	100, 224, 267
MboII	GAAGA	4 cut(s)	102, 161, 164, 553
MflI	RGATCY	1 cut(s)	100
MluCI	AATT	2 cut(s)	106, 421
MlyI	GAGTC	1 cut(s)	482
MmeI	TCCRAC	1 cut(s)	536
MnlI	CCTC	3 cut(s)	320, 546, 613
MseI	TTAA	3 cut(s)	171, 246, 518
MslI	CAYNNNNRTG	1 cut(s)	135
MvnI	CGCG	1 cut(s)	386
MwoI	GCNNNNNNNGC	4 cut(s)	42, 285, 338, 556
NdeII	GATC	3 cut(s)	100, 224, 267
NlaIII	CATG	3 cut(s)	341, 362, 502
NmuCI	GTSAC	1 cut(s)	429
NspI	RCATGY	1 cut(s)	341
NspV	TTCGAA	1 cut(s)	353
PcsI	WCGNNNNNNNCGW	4 cut(s)	132, 258, 455, 489
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	3 cut(s)	256, 388, 558
PleI	GAGTC	1 cut(s)	482
PpsI	GAGTC	1 cut(s)	482
PspFI	CCCAGC	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	100
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
RseI	CAYNNNNRTG	1 cut(s)	135
SaqAI	TTAA	3 cut(s)	171, 246, 518
SatI	GCNGC	3 cut(s)	255, 387, 557
Sau3AI	GATC	3 cut(s)	100, 224, 267
SchI	GAGTC	1 cut(s)	482
SetI	ASST	7 cut(s)	259, 331, 399, 441, 518, 525, 624
SfuI	TTCGAA	1 cut(s)	353
SmiMI	CAYNNNNRTG	1 cut(s)	135
Sse9I	AATT	2 cut(s)	106, 421
SsiI	CCGC	4 cut(s)	36, 167, 324, 386
SspMI	CTAG	2 cut(s)	303, 440
StyI	CCWWGG	1 cut(s)	280
TaaI	ACNGT	1 cut(s)	410
TaqI	TCGA	2 cut(s)	159, 353
TasI	AATT	2 cut(s)	106, 421
TauI	GCSGC	1 cut(s)	389
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	3 cut(s)	171, 246, 518
Tru9I	TTAA	3 cut(s)	171, 246, 518
TscAI	CASTG	2 cut(s)	37, 304
TseFI	GTSAC	1 cut(s)	429
TseI	GCWGC	2 cut(s)	254, 556
Tsp45I	GTSAC	1 cut(s)	429
TspDTI	ATGAA	2 cut(s)	102, 392
TspRI	CASTG	2 cut(s)	37, 304
XapI	RAATTY	1 cut(s)	106
XceI	RCATGY	1 cut(s)	341
XspI	CTAG	2 cut(s)	303, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.