Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001933

Physical Location & Seq

Genomic Coordinates Forward (+)

40256243 .. 40256773

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG349100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTTTAACAACGCCGGCTTCAGCGACGTGGCCAAGCCAAACATCCTCGACAACAACAAGGCCGATTTCGAGCAGGTCCTCAGAGTGAACCTGGTCGGTGTCTTCCTGGGGATCAAGCACGCAGCTCGGGTGATGATGGGAGCTCGAAAAGGGACTATTATCAACACGACTAGCGTTTGCTCGATTATAGGGGGCGCTGCGTCGCATGCGTACACGAGTTCGAAGCATGGAGTCGAGGGGCTCACGAAGAACACGGCGGTAGAGCTCGGACAGTACGGAATACGTGTGAATTGTGTGTCGCCGTATTTGGTGGAGACGCCGTTGACCAAGAAATTTTTTAAGTTCGACAATGAGGGAGTCGGTGGTGTTTACTCTAACCTCAAAGGGGCGGTGCTGAAGGCGGAAGATGTGGCAGAGGCTGTTCTTTACTTGGGAAGTGATGAGTCCAAGTATGTTAGTGGGCATAATTTGGTAGTAGACGGAGGCTACACTATTGTCAACTCAAGGTTCTGTATGTTTGAGCAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

176

Amino Acids

18.89

Weight (kDa)

7.71

Isoelectric Point (pI)

18.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short_C2	PF13561	1 - 164	4.8e-44	Enoyl-(Acyl carrier protein) reductase
adh_short	PF00106	1 - 114	8.6e-30	short chain dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23771 FvH4_3g25650 FvH4_3g25660
malus_domestica	MD11G1171900.v1.1 MD11G1172300.v1.1 MD12G1032600.v1.1
prunus_persica	Prupe.6G138400_v2.0.a1 Prupe.6G138600_v2.0.a1 Prupe.6G138700_v2.0.a1 Prupe.6G138800_v2.0.a1
pyrus_communis	pycom11g14280 pycom11g14340 pycom11g14350 pycom11g14410
rosa_chinensis	RchiOBHm_Chr5g0047121 RchiOBHm_Chr5g0047151
rosa_laevigata	RLG00000034467 RLG00000034469 RLG00000034471 RLG00000034472 RLG00000034473
rosa_multiflora	Rmu_co8232047.1_g000001 Rmu_co8263687.1_g000001 Rmu_sc0001565.1_g000029 Rmu_sc0003154.1_g000029 Rmu_sc0005145.1_g000014 Rmu_sc0019535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034260 Rroxscaffold_1G00034290 Rroxscaffold_1G00034310
rosa_rugosa	Rorug05G0234100 Rorug05G0234200 Rorug05G0234400 Rorug05G0234500 Rorug05G0234700
rosa_samantha	Rh5AG313100 Rh5AG313200 Rh5BG322100 Rh5CG348500 Rh5CG348600 Rh5CG348700 Rh5CG348900 Rh5CG349100 Rh5DG333100 Rh5DG333200
rosa_wichuraiana	Rw5G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	64
AccI	GTMKAC	1 cut(s)	477
AciI	CCGC	3 cut(s)	257, 389, 401
AclWI	GGATC	1 cut(s)	119
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	1 cut(s)	332
AcuI	CTGAAG	2 cut(s)	4, 416
AcyI	GRCGYC	1 cut(s)	317
AfaI	GTAC	2 cut(s)	212, 275
AfiI	CCNNNNNNNGG	1 cut(s)	385
AflIII	ACRYGT	1 cut(s)	283
AjiI	CACGTC	1 cut(s)	28
AjnI	CCWGG	2 cut(s)	90, 105
AluBI	AGCT	3 cut(s)	125, 143, 265
AluI	AGCT	3 cut(s)	125, 143, 265
Alw21I	GWGCWC	2 cut(s)	145, 267
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	1 cut(s)	119
AlwNI	CAGNNNCTG	1 cut(s)	419
Ama87I	CYCGRG	1 cut(s)	126
AoxI	GGCC	2 cut(s)	30, 60
ApeKI	GCWGC	2 cut(s)	122, 197
ApoI	RAATTY	1 cut(s)	332
AspLEI	GCGC	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	1 cut(s)	142
AsuII	TTCGAA	1 cut(s)	221
AvaI	CYCGRG	1 cut(s)	126
AvaII	GGWCC	1 cut(s)	76
BalI	TGGCCA	1 cut(s)	32
BanII	GRGCYC	3 cut(s)	145, 243, 267
BauI	CACGAG	1 cut(s)	214
BbsI	GAAGAC	1 cut(s)	94
Bbv12I	GWGCWC	2 cut(s)	145, 267
BbvI	GCAGC	2 cut(s)	134, 184
BccI	CCATC	1 cut(s)	130
BceAI	ACGGC	3 cut(s)	270, 286, 304
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BciT130I	CCWGG	2 cut(s)	92, 107
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	1 cut(s)	171
BfoI	RGCGCY	1 cut(s)	198
BfuAI	ACCTGC	1 cut(s)	64
BisI	GCNGC	2 cut(s)	123, 198
BlsI	GCNGC	2 cut(s)	124, 199
Bme1390I	CCNGG	2 cut(s)	92, 107
Bme18I	GGWCC	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	126
BmgBI	CACGTC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	76
BmrFI	CCNGG	2 cut(s)	92, 107
BpiI	GAAGAC	1 cut(s)	94
Bpu14I	TTCGAA	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	487
BsaAI	YACGTR	1 cut(s)	284
BsaHI	GRCGYC	1 cut(s)	317
BsaJI	CCNNGG	1 cut(s)	106
BsaXI	ACNNNNNCTCC	2 cut(s)	305, 335
Bsc4I	CCNNNNNNNGG	1 cut(s)	385
Bse118I	RCCGGY	1 cut(s)	14
BseBI	CCWGG	2 cut(s)	92, 107
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	1 cut(s)	42
BseLI	CCNNNNNNNGG	1 cut(s)	385
BseMII	CTCAG	1 cut(s)	94
BseXI	GCAGC	2 cut(s)	134, 184
BshFI	GGCC	2 cut(s)	32, 62
BsiHKAI	GWGCWC	2 cut(s)	145, 267
BsiHKCI	CYCGRG	1 cut(s)	126
BsiSI	CCGG	1 cut(s)	15
BslFI	GGGAC	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	385
BsmAI	GTCTC	1 cut(s)	308
BsmBI	CGTCTC	1 cut(s)	308
BsmFI	GGGAC	1 cut(s)	166
BsnI	GGCC	2 cut(s)	32, 62
BsoBI	CYCGRG	1 cut(s)	126
Bsp119I	TTCGAA	1 cut(s)	221
Bsp1286I	GDGCHC	3 cut(s)	145, 243, 267
Bsp143I	GATC	1 cut(s)	111
BspACI	CCGC	3 cut(s)	257, 389, 401
BspANI	GGCC	2 cut(s)	32, 62
BspCNI	CTCAG	1 cut(s)	93
BspMI	ACCTGC	1 cut(s)	64
BspPI	GGATC	1 cut(s)	119
BspT104I	TTCGAA	1 cut(s)	221
BsrFI	RCCGGY	1 cut(s)	14
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	1 cut(s)	111
BssNI	GRCGYC	1 cut(s)	317
BssSI	CACGAG	1 cut(s)	214
Bst2BI	CACGAG	1 cut(s)	214
Bst2UI	CCWGG	2 cut(s)	92, 107
Bst4CI	ACNGT	1 cut(s)	273
BstACI	GRCGYC	1 cut(s)	317
BstBAI	YACGTR	1 cut(s)	284
BstBI	TTCGAA	1 cut(s)	221
BstC8I	GCNNGC	3 cut(s)	16, 120, 207
BstDEI	CTNAG	1 cut(s)	80
BstF5I	GGATG	1 cut(s)	42
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	1 cut(s)	114
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstNI	CCWGG	2 cut(s)	92, 107
BstNSI	RCATGY	1 cut(s)	209
BstSCI	CCNGG	2 cut(s)	90, 105
BstV1I	GCAGC	2 cut(s)	134, 184
BstV2I	GAAGAC	1 cut(s)	94
BsuRI	GGCC	2 cut(s)	32, 62
BtrI	CACGTC	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	42
BveI	ACCTGC	1 cut(s)	64
Cac8I	GCNNGC	3 cut(s)	16, 120, 207
CaiI	CAGNNNCTG	1 cut(s)	419
CfoI	GCGC	1 cut(s)	197
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	76
CseI	GACGC	2 cut(s)	189, 325
CsiI	ACCWGGT	1 cut(s)	90
Csp6I	GTAC	2 cut(s)	211, 274
CviAII	CATG	2 cut(s)	206, 227
CviQI	GTAC	2 cut(s)	211, 274
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
EaeI	YGGCCR	1 cut(s)	30
EciI	GGCGGA	1 cut(s)	416
Ecl136II	GAGCTC	2 cut(s)	143, 265
Eco24I	GRGCYC	3 cut(s)	145, 243, 267
Eco47I	GGWCC	1 cut(s)	76
Eco53kI	GAGCTC	2 cut(s)	143, 265
Eco57I	CTGAAG	2 cut(s)	4, 416
Eco88I	CYCGRG	1 cut(s)	126
EcoICRI	GAGCTC	2 cut(s)	143, 265
EcoO109I	RGGNCCY	1 cut(s)	76
EcoRII	CCWGG	2 cut(s)	90, 105
EcoT38I	GRGCYC	3 cut(s)	145, 243, 267
Esp3I	CGTCTC	1 cut(s)	308
FaeI	CATG	2 cut(s)	209, 230
FaiI	YATR	6 cut(s)	188, 207, 228, 453, 465, 515
FaqI	GGGAC	1 cut(s)	166
FatI	CATG	2 cut(s)	205, 226
FblI	GTMKAC	1 cut(s)	477
Fnu4HI	GCNGC	2 cut(s)	123, 198
FokI	GGATG	1 cut(s)	29
FriOI	GRGCYC	3 cut(s)	145, 243, 267
Fsp4HI	GCNGC	2 cut(s)	123, 198
FspBI	CTAG	1 cut(s)	171
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	2 cut(s)	123, 198
HaeII	RGCGCY	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	32, 62
HapII	CCGG	1 cut(s)	15
HgaI	GACGC	2 cut(s)	189, 325
HhaI	GCGC	1 cut(s)	197
Hin1I	GRCGYC	1 cut(s)	317
Hin1II	CATG	2 cut(s)	209, 230
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HincII	GTYRAC	2 cut(s)	324, 499
HindII	GTYRAC	2 cut(s)	324, 499
HinfI	GANTC	3 cut(s)	231, 357, 443
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	6 cut(s)	88, 213, 324, 370, 478, 499
Hpy188I	TCNGA	2 cut(s)	83, 269
Hpy188III	TCNNGA	1 cut(s)	244
Hpy8I	GTNNAC	6 cut(s)	88, 213, 324, 370, 478, 499
Hpy99I	CGWCG	2 cut(s)	29, 205
HpyAV	CCTTC	1 cut(s)	391
HpyCH4III	ACNGT	1 cut(s)	273
HpyCH4IV	ACGT	2 cut(s)	27, 283
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	1 cut(s)	80
HpySE526I	ACGT	2 cut(s)	27, 283
Hsp92I	GRCGYC	1 cut(s)	317
Hsp92II	CATG	2 cut(s)	209, 230
HspAI	GCGC	1 cut(s)	195
KroI	GCCGGC	1 cut(s)	14
KroNI	GCCGGC	1 cut(s)	16
Kzo9I	GATC	1 cut(s)	111
LmnI	GCTCC	1 cut(s)	140
LpnPI	CCDG	6 cut(s)	28, 59, 77, 92, 104, 119
Lsp1109I	GCAGC	2 cut(s)	134, 184
MabI	ACCWGGT	1 cut(s)	90
MaeI	CTAG	1 cut(s)	171
MaeII	ACGT	2 cut(s)	27, 283
MalI	GATC	1 cut(s)	113
MboI	GATC	1 cut(s)	111
MboII	GAAGA	3 cut(s)	94, 259, 416
MhlI	GDGCHC	3 cut(s)	145, 243, 267
MlsI	TGGCCA	1 cut(s)	32
MluCI	AATT	3 cut(s)	289, 332, 466
MluNI	TGGCCA	1 cut(s)	32
MlyI	GAGTC	3 cut(s)	240, 366, 452
MnlI	CCTC	7 cut(s)	56, 89, 229, 346, 389, 409, 476
Mox20I	TGGCCA	1 cut(s)	32
MroNI	GCCGGC	1 cut(s)	14
MscI	TGGCCA	1 cut(s)	32
MseI	TTAA	3 cut(s)	6, 339, 529
Msp20I	TGGCCA	1 cut(s)	32
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	2 cut(s)	92, 107
MvaI	CCWGG	2 cut(s)	92, 107
MwoI	GCNNNNNNNGC	1 cut(s)	206
NaeI	GCCGGC	1 cut(s)	16
NdeII	GATC	1 cut(s)	111
NgoMIV	GCCGGC	1 cut(s)	14
NlaIII	CATG	2 cut(s)	209, 230
NspI	RCATGY	1 cut(s)	209
NspV	TTCGAA	1 cut(s)	221
PaeI	GCATGC	1 cut(s)	209
PdiI	GCCGGC	1 cut(s)	16
PkrI	GCNGC	2 cut(s)	124, 199
PleI	GAGTC	3 cut(s)	239, 365, 451
PpsI	GAGTC	3 cut(s)	239, 365, 451
Ppu21I	YACGTR	1 cut(s)	284
PpuMI	RGGWCCY	1 cut(s)	76
Psp124BI	GAGCTC	2 cut(s)	145, 267
Psp5II	RGGWCCY	1 cut(s)	76
Psp6I	CCWGG	2 cut(s)	90, 105
PspGI	CCWGG	2 cut(s)	90, 105
PspPI	GGNCC	1 cut(s)	76
PspPPI	RGGWCCY	1 cut(s)	76
PstNI	CAGNNNCTG	1 cut(s)	419
RsaI	GTAC	2 cut(s)	212, 275
RsaNI	GTAC	2 cut(s)	211, 274
SacI	GAGCTC	2 cut(s)	145, 267
SaqAI	TTAA	3 cut(s)	6, 339, 529
SatI	GCNGC	2 cut(s)	123, 198
Sau3AI	GATC	1 cut(s)	111
Sau96I	GGNCC	1 cut(s)	76
SchI	GAGTC	3 cut(s)	240, 366, 452
ScrFI	CCNGG	2 cut(s)	92, 107
SduI	GDGCHC	3 cut(s)	145, 243, 267
SetI	ASST	9 cut(s)	30, 78, 93, 127, 145, 267, 286, 381, 509
SexAI	ACCWGGT	1 cut(s)	90
SfuI	TTCGAA	1 cut(s)	221
SinI	GGWCC	1 cut(s)	76
SmlI	CTYRAG	1 cut(s)	502
SmoI	CTYRAG	1 cut(s)	502
SphI	GCATGC	1 cut(s)	209
Sse9I	AATT	3 cut(s)	289, 332, 466
SsiI	CCGC	3 cut(s)	257, 389, 401
SspMI	CTAG	1 cut(s)	171
SstI	GAGCTC	2 cut(s)	145, 267
StyD4I	CCNGG	2 cut(s)	90, 105
TaaI	ACNGT	1 cut(s)	273
TaiI	ACGT	2 cut(s)	30, 286
TaqI	TCGA	7 cut(s)	48, 69, 145, 182, 221, 234, 345
TasI	AATT	3 cut(s)	289, 332, 466
Tru1I	TTAA	3 cut(s)	6, 339, 529
Tru9I	TTAA	3 cut(s)	6, 339, 529
TseI	GCWGC	2 cut(s)	122, 197
TspGWI	ACGGA	2 cut(s)	291, 495
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	1 cut(s)	332
XceI	RCATGY	1 cut(s)	209
XmiI	GTMKAC	1 cut(s)	477
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.