Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001933

Physical Location & Seq

Genomic Coordinates Forward (+)

11254165 .. 11256877

Gene Structure 2713 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G138400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCTATAGGAAATTTCTCATTACTTGCTGCTGCTGCAAGAAGGCTTGAAGGTAAAGTGGCCCTAATCACTGGTGGGGCGAGCGGCATAGGAGAGTCCACTGCAAGACTCTTCTCAAAACATGGAGCTAAAGTTGTGATTGCAGATGTGCAAGACGACTTGGCTGAATCTGTTTGCAGAGACCTAAGCCCTTCGCCCACTTTGTTTGTCCATTGTGATGTAACGAAAGAAGAAGACGTCGAAAACGCTGTCCAAACAACCACAAACAAATATGGAGAGCTAGACATCATGTTCAACAATGCAGGTATAATTGGCACGAATAAACCCAACATCCTTGACAATGACAAGGTAGAATTTGAGCAAGTGATAAGGGTAAATCTAGTTGGTGCGTTTTTGGGGATCAAACATGCAGCTCGTGTTATGATCCCAGCTGGAAAAGGTAGCATAATAAACACTGCTAGTGTTTGTTCTACCATCGGGGGTTGCGCATCACATGCATACACAAGTTCAAAGCATGGTTTAGTAGGGCTGGTGAGAAACACGGCCGTGGAGCTTGGACAACATGGTATTCGTGTGAATTGTGTGTCACCGTATGCAGTTGCCACGAAGTTAGCAAAGGAGTTCTTTAAGATTGATGATGATGGAGTTCATGGTGCTTATTCCAACCTTAAAGGTAGGGTTCTTAAGGCAGAAGATATTGCTGAAGCTGCTCTTTACTTGGGTAGTGATGAGTCAAAGTATGTTAGTGGGCATAATCTTTTGGTAGATGGAGGCTACACTATTATGAACGCA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

264

Amino Acids

27.84

Weight (kDa)

6.06

Isoelectric Point (pI)

17.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23771 FvH4_3g25650 FvH4_3g25660
malus_domestica	MD11G1171900.v1.1 MD11G1172300.v1.1 MD12G1032600.v1.1
prunus_persica	Prupe.6G138400_v2.0.a1 Prupe.6G138600_v2.0.a1 Prupe.6G138700_v2.0.a1 Prupe.6G138800_v2.0.a1
pyrus_communis	pycom11g14280 pycom11g14340 pycom11g14350 pycom11g14410
rosa_chinensis	RchiOBHm_Chr5g0047121 RchiOBHm_Chr5g0047151
rosa_laevigata	RLG00000034467 RLG00000034469 RLG00000034471 RLG00000034472 RLG00000034473
rosa_multiflora	Rmu_co8232047.1_g000001 Rmu_co8263687.1_g000001 Rmu_sc0001565.1_g000029 Rmu_sc0003154.1_g000029 Rmu_sc0005145.1_g000014 Rmu_sc0019535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034260 Rroxscaffold_1G00034290 Rroxscaffold_1G00034310
rosa_rugosa	Rorug05G0234100 Rorug05G0234200 Rorug05G0234400 Rorug05G0234500 Rorug05G0234700
rosa_samantha	Rh5AG313100 Rh5AG313200 Rh5BG322100 Rh5CG348500 Rh5CG348600 Rh5CG348700 Rh5CG348900 Rh5CG349100 Rh5DG333100 Rh5DG333200
rosa_wichuraiana	Rw5G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	240
Acc16I	TGCGCA	1 cut(s)	487
Acc36I	ACCTGC	1 cut(s)	293
AccBSI	CCGCTC	1 cut(s)	84
AciI	CCGC	1 cut(s)	84
AclWI	GGATC	2 cut(s)	407, 418
AcoI	YGGCCR	1 cut(s)	543
AcsI	RAATTY	2 cut(s)	13, 353
AcuI	CTGAAG	1 cut(s)	723
AcyI	GRCGYC	1 cut(s)	237
AflII	CTTAAG	1 cut(s)	683
AgsI	TTSAA	3 cut(s)	50, 295, 510
AleI	CACNNNNGTG	1 cut(s)	545
AluBI	AGCT	6 cut(s)	128, 280, 413, 431, 553, 707
AluI	AGCT	6 cut(s)	128, 280, 413, 431, 553, 707
Alw26I	GTCTC	1 cut(s)	174
AlwI	GGATC	2 cut(s)	407, 418
AoxI	GGCC	2 cut(s)	60, 543
ApeKI	GCWGC	5 cut(s)	29, 32, 35, 410, 707
ApoI	RAATTY	2 cut(s)	13, 353
ArsI	GACNNNNNNTTYG	2 cut(s)	234, 266
AspLEI	GCGC	1 cut(s)	488
AspS9I	GGNCC	1 cut(s)	61
AsuHPI	GGTGA	2 cut(s)	544, 579
BauI	CACGAG	1 cut(s)	414
BbsI	GAAGAC	1 cut(s)	240
BbvI	GCAGC	5 cut(s)	16, 19, 22, 422, 694
BccI	CCATC	3 cut(s)	482, 635, 761
BceAI	ACGGC	2 cut(s)	530, 558
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	3 cut(s)	281, 380, 459
BfmI	CTRYAG	1 cut(s)	6
BfrI	CTTAAG	1 cut(s)	683
BfuAI	ACCTGC	1 cut(s)	293
BisI	GCNGC	6 cut(s)	30, 33, 36, 85, 411, 708
BlsI	GCNGC	6 cut(s)	31, 34, 37, 86, 412, 709
BmgT120I	GGNCC	1 cut(s)	61
BmsI	GCATC	1 cut(s)	497
BpiI	GAAGAC	1 cut(s)	240
Bpu10I	CCTNAGC	1 cut(s)	185
BsaHI	GRCGYC	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	546
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bse1I	ACTGG	1 cut(s)	76
BseDI	CCNNGG	1 cut(s)	546
BseGI	GGATG	1 cut(s)	330
BseNI	ACTGG	1 cut(s)	76
BseX3I	CGGCCG	1 cut(s)	543
BseXI	GCAGC	5 cut(s)	16, 19, 22, 422, 694
BseYI	CCCAGC	1 cut(s)	427
Bsh1285I	CGRYCG	1 cut(s)	546
BshFI	GGCC	2 cut(s)	62, 545
BsiEI	CGRYCG	1 cut(s)	546
BsmAI	GTCTC	1 cut(s)	174
BsnI	GGCC	2 cut(s)	62, 545
Bso31I	GGTCTC	1 cut(s)	174
Bsp143I	GATC	2 cut(s)	399, 423
BspACI	CCGC	1 cut(s)	84
BspANI	GGCC	2 cut(s)	62, 545
BspMI	ACCTGC	1 cut(s)	293
BspPI	GGATC	2 cut(s)	407, 418
BspTI	CTTAAG	1 cut(s)	683
BspTNI	GGTCTC	1 cut(s)	174
BsrBI	CCGCTC	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	546
BssMI	GATC	2 cut(s)	399, 423
BssNI	GRCGYC	1 cut(s)	237
BssSI	CACGAG	1 cut(s)	414
Bst2BI	CACGAG	1 cut(s)	414
Bst4CI	ACNGT	1 cut(s)	591
Bst6I	CTCTTC	1 cut(s)	116
BstACI	GRCGYC	1 cut(s)	237
BstAFI	CTTAAG	1 cut(s)	683
BstAPI	GCANNNNNTGC	1 cut(s)	494
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	1 cut(s)	185
BstDSI	CCRYGG	1 cut(s)	546
BstF5I	GGATG	1 cut(s)	330
BstHHI	GCGC	1 cut(s)	488
BstKTI	GATC	2 cut(s)	402, 426
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	2 cut(s)	399, 423
BstMCI	CGRYCG	1 cut(s)	546
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 494, 707
BstNSI	RCATGY	2 cut(s)	410, 497
BstSFI	CTRYAG	1 cut(s)	6
BstV1I	GCAGC	5 cut(s)	16, 19, 22, 422, 694
BstV2I	GAAGAC	1 cut(s)	240
BstZI	CGGCCG	1 cut(s)	543
BsuRI	GGCC	2 cut(s)	62, 545
BtgI	CCRYGG	1 cut(s)	546
BtsCI	GGATG	1 cut(s)	330
BtsI	GCAGTG	2 cut(s)	99, 453
BtsIMutI	CAGTG	3 cut(s)	69, 99, 453
BveI	ACCTGC	1 cut(s)	293
Cac8I	GCNNGC	1 cut(s)	82
CfoI	GCGC	1 cut(s)	488
Cfr13I	GGNCC	1 cut(s)	61
CspCI	CAANNNNNGTGG	2 cut(s)	187, 222
CviAII	CATG	7 cut(s)	122, 289, 407, 494, 515, 563, 650
DdeI	CTNAG	1 cut(s)	185
DpnI	GATC	2 cut(s)	401, 425
DpnII	GATC	2 cut(s)	399, 423
EaeI	YGGCCR	1 cut(s)	543
EagI	CGGCCG	1 cut(s)	543
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
EclXI	CGGCCG	1 cut(s)	543
Eco31I	GGTCTC	1 cut(s)	174
Eco52I	CGGCCG	1 cut(s)	543
Eco57I	CTGAAG	1 cut(s)	723
EcoT22I	ATGCAT	1 cut(s)	499
FaeI	CATG	7 cut(s)	125, 292, 410, 497, 518, 566, 653
FalI	AAGNNNNNCTT	4 cut(s)	608, 640, 696, 728
FatI	CATG	7 cut(s)	121, 288, 406, 493, 514, 562, 649
Fnu4HI	GCNGC	6 cut(s)	30, 33, 36, 85, 411, 708
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	6 cut(s)	30, 33, 36, 85, 411, 708
FspBI	CTAG	3 cut(s)	281, 380, 459
FspI	TGCGCA	1 cut(s)	487
GlaI	GCGC	1 cut(s)	487
GluI	GCNGC	6 cut(s)	30, 33, 36, 85, 411, 708
GsaI	CCCAGC	1 cut(s)	431
HaeIII	GGCC	2 cut(s)	62, 545
HhaI	GCGC	1 cut(s)	488
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	7 cut(s)	125, 292, 410, 497, 518, 566, 653
Hin6I	GCGC	1 cut(s)	486
HinP1I	GCGC	1 cut(s)	486
HinfI	GANTC	4 cut(s)	95, 108, 167, 731
HphI	GGTGA	2 cut(s)	544, 579
Hpy166II	GTNNAC	1 cut(s)	99
Hpy8I	GTNNAC	1 cut(s)	99
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	3 cut(s)	36, 44, 201
HpyCH4III	ACNGT	1 cut(s)	591
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	9 cut(s)	38, 104, 143, 151, 177, 302, 410, 497, 596
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 494, 707
HpyF3I	CTNAG	1 cut(s)	185
HpySE526I	ACGT	1 cut(s)	237
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	7 cut(s)	125, 292, 410, 497, 518, 566, 653
HspAI	GCGC	1 cut(s)	486
Kzo9I	GATC	2 cut(s)	399, 423
LmnI	GCTCC	2 cut(s)	125, 550
LpnPI	CCDG	5 cut(s)	57, 288, 417, 441, 515
Lsp1109I	GCAGC	5 cut(s)	16, 19, 22, 422, 694
LweI	GCATC	1 cut(s)	497
MaeI	CTAG	3 cut(s)	281, 380, 459
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	2 cut(s)	220, 585
MalI	GATC	2 cut(s)	401, 425
MbiI	CCGCTC	1 cut(s)	84
MboI	GATC	2 cut(s)	399, 423
MboII	GAAGA	4 cut(s)	103, 242, 245, 704
MluCI	AATT	4 cut(s)	13, 309, 353, 577
MlyI	GAGTC	3 cut(s)	102, 104, 740
MmeI	TCCRAC	1 cut(s)	687
MnlI	CCTC	1 cut(s)	764
Mph1103I	ATGCAT	1 cut(s)	499
MseI	TTAA	3 cut(s)	627, 669, 684
MslI	CAYNNNNRTG	3 cut(s)	216, 545, 782
MspA1I	CMGCKG	1 cut(s)	431
MspCI	CTTAAG	1 cut(s)	683
MwoI	GCNNNNNNNGC	3 cut(s)	35, 494, 707
NdeII	GATC	2 cut(s)	399, 423
NlaIII	CATG	7 cut(s)	125, 292, 410, 497, 518, 566, 653
NmuCI	GTSAC	1 cut(s)	585
NsbI	TGCGCA	1 cut(s)	487
NsiI	ATGCAT	1 cut(s)	499
NspI	RCATGY	2 cut(s)	410, 497
OliI	CACNNNNGTG	1 cut(s)	545
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	6 cut(s)	31, 34, 37, 86, 412, 709
PleI	GAGTC	3 cut(s)	102, 103, 739
PpsI	GAGTC	3 cut(s)	102, 103, 739
PspFI	CCCAGC	1 cut(s)	427
PspPI	GGNCC	1 cut(s)	61
PvuII	CAGCTG	1 cut(s)	431
RseI	CAYNNNNRTG	3 cut(s)	216, 545, 782
SaqAI	TTAA	3 cut(s)	627, 669, 684
SatI	GCNGC	6 cut(s)	30, 33, 36, 85, 411, 708
Sau3AI	GATC	2 cut(s)	399, 423
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	3 cut(s)	102, 104, 740
SfaNI	GCATC	1 cut(s)	497
SfcI	CTRYAG	1 cut(s)	6
SmiMI	CAYNNNNRTG	3 cut(s)	216, 545, 782
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
Sse9I	AATT	4 cut(s)	13, 309, 353, 577
SsiI	CCGC	1 cut(s)	84
SspMI	CTAG	3 cut(s)	281, 380, 459
TaaI	ACNGT	1 cut(s)	591
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	1 cut(s)	240
TasI	AATT	4 cut(s)	13, 309, 353, 577
TauI	GCSGC	1 cut(s)	87
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	3 cut(s)	627, 669, 684
Tru9I	TTAA	3 cut(s)	627, 669, 684
TscAI	CASTG	3 cut(s)	76, 106, 460
TseFI	GTSAC	1 cut(s)	585
TseI	GCWGC	5 cut(s)	29, 32, 35, 410, 707
Tsp45I	GTSAC	1 cut(s)	585
TspDTI	ATGAA	1 cut(s)	638
TspRI	CASTG	3 cut(s)	76, 106, 460
Vha464I	CTTAAG	1 cut(s)	683
XapI	RAATTY	2 cut(s)	13, 353
XceI	RCATGY	2 cut(s)	410, 497
XspI	CTAG	3 cut(s)	281, 380, 459
ZraI	GACGTC	1 cut(s)	238
Zsp2I	ATGCAT	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.