pycom11g14350

Secoisolariciresinol dehydrogenase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0001933
Physical Location & Seq
Forward (+)
14292696 .. 14292983
288 bp
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UTR
Exon/CDS
Intron
pycom11g14350.1

Sequence Viewer

Length: 288 bp
ATGAAAAATGCGGCCGTTGAGCTTGGACAATACGGTATTCGTGTAAATTGCGTGTCACCATACCTAGTTGCAACACCGTTGGCGAAGGACTTTTTCAATCTTGATGACGATGGAGTGCATGGAGTTTATTCCAACCTTAAAGGTAAGGTTCTTAGGCCAGAAGATGTTGCTGAGGCTGCTCTTTACTTGGGTAGTGATGAGTCAAAATATGTTAGTGGGCATAATCTTTTGGTGGATGGAGGTTTTAGTATTGTGAACCCAAGGTTTTGTATGTTTGAGAAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

96

Amino Acids

10.37

Weight (kDa)

5.18

Isoelectric Point (pI)

18.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 2 - 83 1.1e-20 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 11
AcoI YGGCCR 1 cut(s) 12
AgsI TTSAA 1 cut(s) 97
AluBI AGCT 1 cut(s) 22
AluI AGCT 1 cut(s) 22
AoxI GGCC 2 cut(s) 12, 155
ApeKI GCWGC 1 cut(s) 176
AsuHPI GGTGA 1 cut(s) 48
BbvCI CCTCAGC 1 cut(s) 171
BbvI GCAGC 1 cut(s) 163
BccI CCATC 2 cut(s) 104, 230
BfaI CTAG 1 cut(s) 65
BisI GCNGC 2 cut(s) 12, 177
BlsI GCNGC 2 cut(s) 13, 178
Bpu10I CCTNAGC 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 260
BseDI CCNNGG 1 cut(s) 260
BseGI GGATG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 162
BseX3I CGGCCG 1 cut(s) 12
BseXI GCAGC 1 cut(s) 163
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 2 cut(s) 14, 157
BsiEI CGRYCG 1 cut(s) 15
BsnI GGCC 2 cut(s) 14, 157
BspACI CCGC 1 cut(s) 11
BspANI GGCC 2 cut(s) 14, 157
BspCNI CTCAG 1 cut(s) 163
BssECI CCNNGG 1 cut(s) 260
BssT1I CCWWGG 1 cut(s) 260
Bst4CI ACNGT 2 cut(s) 35, 78
BstDEI CTNAG 2 cut(s) 152, 171
BstF5I GGATG 1 cut(s) 241
BstMCI CGRYCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstV1I GCAGC 1 cut(s) 163
BstZI CGGCCG 1 cut(s) 12
BsuRI GGCC 2 cut(s) 14, 157
BtsCI GGATG 1 cut(s) 241
CviAII CATG 1 cut(s) 119
CviJI RGCY 4 cut(s) 14, 22, 157, 176
CviKI_1 RGCY 4 cut(s) 14, 22, 157, 176
DdeI CTNAG 2 cut(s) 152, 171
EaeI YGGCCR 1 cut(s) 12
EagI CGGCCG 1 cut(s) 12
EclXI CGGCCG 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 260
Eco52I CGGCCG 1 cut(s) 12
EcoT14I CCWWGG 1 cut(s) 260
ErhI CCWWGG 1 cut(s) 260
FaeI CATG 1 cut(s) 122
FaiI YATR 5 cut(s) 61, 120, 210, 222, 272
FatI CATG 1 cut(s) 118
Fnu4HI GCNGC 2 cut(s) 12, 177
FokI GGATG 1 cut(s) 248
Fsp4HI GCNGC 2 cut(s) 12, 177
FspBI CTAG 1 cut(s) 65
GluI GCNGC 2 cut(s) 12, 177
HaeIII GGCC 2 cut(s) 14, 157
Hin1II CATG 1 cut(s) 122
HinfI GANTC 1 cut(s) 200
HphI GGTGA 1 cut(s) 48
Hpy166II GTNNAC 1 cut(s) 256
Hpy188III TCNNGA 2 cut(s) 101, 285
Hpy8I GTNNAC 1 cut(s) 256
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 2 cut(s) 35, 78
HpyCH4V TGCA 2 cut(s) 71, 118
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 2 cut(s) 152, 171
Hsp92II CATG 1 cut(s) 122
LpnPI CCDG 1 cut(s) 171
Lsp1109I GCAGC 1 cut(s) 163
MaeI CTAG 1 cut(s) 65
MaeIII GTNAC 1 cut(s) 54
MboII GAAGA 1 cut(s) 173
MluCI AATT 1 cut(s) 46
MlyI GAGTC 1 cut(s) 209
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 2 cut(s) 166, 233
MseI TTAA 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 176
NlaIII CATG 1 cut(s) 122
NmuCI GTSAC 1 cut(s) 54
PkrI GCNGC 2 cut(s) 13, 178
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 2 cut(s) 12, 177
SchI GAGTC 1 cut(s) 209
SetI ASST 7 cut(s) 24, 66, 138, 145, 150, 244, 266
SgeI CNNG 9 cut(s) 35, 53, 64, 77, 113, 131, 170, 199, 273
Sse9I AATT 1 cut(s) 46
SsiI CCGC 1 cut(s) 11
SspMI CTAG 1 cut(s) 65
StyI CCWWGG 1 cut(s) 260
TaaI ACNGT 2 cut(s) 35, 78
TasI AATT 1 cut(s) 46
TauI GCSGC 1 cut(s) 14
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TseFI GTSAC 1 cut(s) 54
TseI GCWGC 1 cut(s) 176
Tsp45I GTSAC 1 cut(s) 54
TspDTI ATGAA 1 cut(s) 17
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.