Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001933

Physical Location & Seq

Genomic Coordinates Forward (+)

14203531 .. 14205837

Gene Structure 2307 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g14280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCCCGCAATTCACATGGGCTGTCTCCACCTCCAGGAAGTGATTCACTTGTTCCAGAAGAGGAGGAGGTTAAATCTTTTTCGAAGAATATGGGAACCTTCTCATTAGTCACAGCAGCTGCTGCTGCTGCTGCAAGAAGGCTTGAAGGCAAAGTGGCACTGATCACTGGTGGAGCCAGCGGCATAGGGGAGTCCACAGCAAGAGTCTTCTCAAAACATGGAGCTAAAGTTGTGATTGCGGATGTGCAAGACGACTTGGGTGAATCTGTTTGCAGAGATCTAAATTCTTCATCCGCTTCCTTCGTCCATTGCGATGTAACAGAAGAAGAAGACATCGAACATGCAGTTAAAACAGCCACAAGCAAGTATGGAAAGCTAGACATCATGTTCAACAATGCAGGCATAATTGGCACACCCAAACCCAATATCCTCGACAATGGCAAGGCTGAATTTGAGCAAGTGATTAGGGTAAATCTAGTCGGAGCATTTTTGGGGATTAAACATGCAGCTCGTGTGATGATCCCGGCAGGACAAGGCAGCATAATCAACACTGCTAGTGTTTGTTCTACCATGGGCGGAAGTGCTTCACATGCCTACACAAGTTCGAAGCACGGTGTAGTGGGGCTAATGAAAAATGCGGCCGTTGAGCTTGGACAATACGGTATTCGTGTAAATTGCGTGTCACCATACCTAGTTGCAACGCCGTTGGCGAAGCACTTCTTCAATCTTGAAGACGACGGAGTGCATGGAGTTTATTCCAACCTTAAAGGGAAGGTCCTTAGGCCAGAAGATGTTGCTGAGGCTGCCCTTTACTTGGGTAGTGATGAGTCAAAGTATGTTAGTGGGCATAATCTTTTGGTGGATGGAGGTTTTAGTATTGTGAACCCAAGGTTTTGCATGTTTGAGAAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

305

Amino Acids

31.99

Weight (kDa)

6.06

Isoelectric Point (pI)

27.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDR	PF23441	46 - 291	3.3e-07	SDR-like rossmann domain
adh_short	PF00106	51 - 240	1.7e-54	short chain dehydrogenase
KR	PF08659	53 - 201	8.2e-08	KR domain
adh_short_C2	PF13561	59 - 292	2.8e-65	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23771 FvH4_3g25650 FvH4_3g25660
malus_domestica	MD11G1171900.v1.1 MD11G1172300.v1.1 MD12G1032600.v1.1
prunus_persica	Prupe.6G138400_v2.0.a1 Prupe.6G138600_v2.0.a1 Prupe.6G138700_v2.0.a1 Prupe.6G138800_v2.0.a1
pyrus_communis	pycom11g14280 pycom11g14340 pycom11g14350 pycom11g14410
rosa_chinensis	RchiOBHm_Chr5g0047121 RchiOBHm_Chr5g0047151
rosa_laevigata	RLG00000034467 RLG00000034469 RLG00000034471 RLG00000034472 RLG00000034473
rosa_multiflora	Rmu_co8232047.1_g000001 Rmu_co8263687.1_g000001 Rmu_sc0001565.1_g000029 Rmu_sc0003154.1_g000029 Rmu_sc0005145.1_g000014 Rmu_sc0019535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034260 Rroxscaffold_1G00034290 Rroxscaffold_1G00034310
rosa_rugosa	Rorug05G0234100 Rorug05G0234200 Rorug05G0234400 Rorug05G0234500 Rorug05G0234700
rosa_samantha	Rh5AG313100 Rh5AG313200 Rh5BG322100 Rh5CG348500 Rh5CG348600 Rh5CG348700 Rh5CG348900 Rh5CG349100 Rh5DG333100 Rh5DG333200
rosa_wichuraiana	Rw5G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	7, 180, 239, 294, 576, 638
AclWI	GGATC	1 cut(s)	514
AcoI	YGGCCR	1 cut(s)	639
AcsI	RAATTY	2 cut(s)	283, 449
AfiI	CCNNNNNNNGG	2 cut(s)	35, 814
AgsI	TTSAA	4 cut(s)	146, 391, 724, 731
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	5 cut(s)	119, 224, 376, 509, 649
AluI	AGCT	5 cut(s)	119, 224, 376, 509, 649
Alw26I	GTCTC	1 cut(s)	30
AlwI	GGATC	1 cut(s)	514
AlwNI	CAGNNNCTG	2 cut(s)	119, 122
AoxI	GGCC	3 cut(s)	3, 639, 782
ApeKI	GCWGC	9 cut(s)	116, 119, 122, 125, 128, 131, 506, 537, 803
ApoI	RAATTY	2 cut(s)	283, 449
Asp700I	GAANNNNTTC	3 cut(s)	43, 583, 716
AspS9I	GGNCC	2 cut(s)	4, 775
AsuC2I	CCSGG	1 cut(s)	524
AsuHPI	GGTGA	2 cut(s)	272, 675
AsuII	TTCGAA	2 cut(s)	83, 605
AvaII	GGWCC	1 cut(s)	775
AxyI	CCTNAGG	1 cut(s)	779
BauI	CACGAG	1 cut(s)	510
BbsI	GAAGAC	3 cut(s)	199, 336, 738
BbvCI	CCTCAGC	1 cut(s)	798
BbvI	GCAGC	9 cut(s)	106, 109, 112, 115, 118, 128, 518, 549, 790
BccI	CCATC	1 cut(s)	857
BceAI	ACGGC	2 cut(s)	626, 688
BciT130I	CCWGG	1 cut(s)	36
BclI	TGATCA	1 cut(s)	162
BcnI	CCSGG	1 cut(s)	524
BcoDI	GTCTC	1 cut(s)	30
BfaI	CTAG	4 cut(s)	377, 476, 555, 692
BglII	AGATCT	1 cut(s)	277
Bme1390I	CCNGG	2 cut(s)	36, 524
Bme18I	GGWCC	1 cut(s)	775
BmgT120I	GGNCC	2 cut(s)	4, 775
BmiI	GGNNCC	2 cut(s)	97, 175
BmrFI	CCNGG	2 cut(s)	36, 524
BpiI	GAAGAC	3 cut(s)	199, 336, 738
BpmI	CTGGAG	1 cut(s)	18
Bpu10I	CCTNAGC	1 cut(s)	798
Bpu14I	TTCGAA	2 cut(s)	83, 605
BpuMI	CCSGG	1 cut(s)	524
BsaJI	CCNNGG	2 cut(s)	570, 887
BsaXI	ACNNNNNCTCC	2 cut(s)	213, 243
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 814
Bse1I	ACTGG	1 cut(s)	172
Bse21I	CCTNAGG	1 cut(s)	779
Bse3DI	GCAATG	1 cut(s)	307
BseBI	CCWGG	1 cut(s)	36
BseDI	CCNNGG	2 cut(s)	570, 887
BseGI	GGATG	3 cut(s)	247, 290, 868
BseLI	CCNNNNNNNGG	2 cut(s)	35, 814
BseMI	GCAATG	1 cut(s)	307
BseMII	CTCAG	1 cut(s)	789
BseNI	ACTGG	1 cut(s)	172
BseRI	GAGGAG	2 cut(s)	77, 80
BseX3I	CGGCCG	1 cut(s)	639
BseXI	GCAGC	9 cut(s)	106, 109, 112, 115, 118, 128, 518, 549, 790
Bsh1285I	CGRYCG	1 cut(s)	642
BshFI	GGCC	3 cut(s)	5, 641, 784
BsiEI	CGRYCG	1 cut(s)	642
BsiSI	CCGG	1 cut(s)	524
BslI	CCNNNNNNNGG	2 cut(s)	35, 814
BsmAI	GTCTC	1 cut(s)	30
BsnI	GGCC	3 cut(s)	5, 641, 784
Bsp119I	TTCGAA	2 cut(s)	83, 605
Bsp143I	GATC	3 cut(s)	162, 277, 519
Bsp19I	CCATGG	1 cut(s)	570
BspACI	CCGC	6 cut(s)	7, 180, 239, 294, 576, 638
BspANI	GGCC	3 cut(s)	5, 641, 784
BspCNI	CTCAG	1 cut(s)	790
BspLI	GGNNCC	2 cut(s)	97, 175
BspPI	GGATC	1 cut(s)	514
BspT104I	TTCGAA	2 cut(s)	83, 605
BsrDI	GCAATG	1 cut(s)	307
BsrI	ACTGG	1 cut(s)	172
BssECI	CCNNGG	2 cut(s)	570, 887
BssMI	GATC	3 cut(s)	162, 277, 519
BssSI	CACGAG	1 cut(s)	510
BssT1I	CCWWGG	2 cut(s)	570, 887
Bst2BI	CACGAG	1 cut(s)	510
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	2 cut(s)	614, 662
Bst6I	CTCTTC	1 cut(s)	54
BstAPI	GCANNNNNTGC	1 cut(s)	122
BstBI	TTCGAA	2 cut(s)	83, 605
BstC8I	GCNNGC	3 cut(s)	7, 178, 400
BstDEI	CTNAG	2 cut(s)	779, 798
BstDSI	CCRYGG	1 cut(s)	570
BstF5I	GGATG	3 cut(s)	247, 290, 868
BstKTI	GATC	3 cut(s)	165, 280, 522
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	3 cut(s)	162, 277, 519
BstMCI	CGRYCG	1 cut(s)	642
BstMWI	GCNNNNNNNGC	7 cut(s)	122, 125, 128, 131, 408, 590, 803
BstNI	CCWGG	1 cut(s)	36
BstNSI	RCATGY	4 cut(s)	344, 506, 593, 901
BstSCI	CCNGG	2 cut(s)	34, 522
BstV1I	GCAGC	9 cut(s)	106, 109, 112, 115, 118, 128, 518, 549, 790
BstV2I	GAAGAC	3 cut(s)	199, 336, 738
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
BstZI	CGGCCG	1 cut(s)	639
Bsu36I	CCTNAGG	1 cut(s)	779
BsuRI	GGCC	3 cut(s)	5, 641, 784
BtgI	CCRYGG	1 cut(s)	570
BtgZI	GCGATG	1 cut(s)	327
BtsCI	GGATG	3 cut(s)	247, 290, 868
BtsI	GCAGTG	1 cut(s)	549
BtsIMutI	CAGTG	3 cut(s)	158, 165, 549
Cac8I	GCNNGC	3 cut(s)	7, 178, 400
CaiI	CAGNNNCTG	2 cut(s)	119, 122
Cfr13I	GGNCC	2 cut(s)	4, 775
CviAII	CATG	9 cut(s)	17, 218, 341, 385, 503, 571, 590, 746, 898
DdeI	CTNAG	2 cut(s)	779, 798
DpnI	GATC	3 cut(s)	164, 279, 521
DpnII	GATC	3 cut(s)	162, 277, 519
EaeI	YGGCCR	1 cut(s)	639
EagI	CGGCCG	1 cut(s)	639
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
EciI	GGCGGA	1 cut(s)	591
EclXI	CGGCCG	1 cut(s)	639
Eco130I	CCWWGG	2 cut(s)	570, 887
Eco47I	GGWCC	1 cut(s)	775
Eco52I	CGGCCG	1 cut(s)	639
Eco81I	CCTNAGG	1 cut(s)	779
EcoO109I	RGGNCCY	1 cut(s)	775
EcoRII	CCWGG	1 cut(s)	34
EcoT14I	CCWWGG	2 cut(s)	570, 887
ErhI	CCWWGG	2 cut(s)	570, 887
FaeI	CATG	9 cut(s)	20, 221, 344, 388, 506, 574, 593, 749, 901
FalI	AAGNNNNNCTT	2 cut(s)	704, 736
FatI	CATG	9 cut(s)	16, 217, 340, 384, 502, 570, 589, 745, 897
FauI	CCCGC	1 cut(s)	14
FbaI	TGATCA	1 cut(s)	162
FokI	GGATG	3 cut(s)	254, 277, 875
FspBI	CTAG	4 cut(s)	377, 476, 555, 692
GsuI	CTGGAG	1 cut(s)	18
HaeIII	GGCC	3 cut(s)	5, 641, 784
HapII	CCGG	1 cut(s)	524
Hin1II	CATG	9 cut(s)	20, 221, 344, 388, 506, 574, 593, 749, 901
HinfI	GANTC	5 cut(s)	44, 191, 204, 263, 827
HpaII	CCGG	1 cut(s)	524
HphI	GGTGA	2 cut(s)	272, 675
Hpy166II	GTNNAC	2 cut(s)	195, 883
Hpy188I	TCNGA	1 cut(s)	482
Hpy188III	TCNNGA	3 cut(s)	56, 728, 912
Hpy8I	GTNNAC	2 cut(s)	195, 883
Hpy99I	CGWCG	1 cut(s)	740
HpyAV	CCTTC	5 cut(s)	109, 132, 140, 310, 766
HpyCH4III	ACNGT	2 cut(s)	614, 662
HpyCH4V	TGCA	9 cut(s)	134, 247, 273, 344, 398, 506, 698, 745, 897
HpyF10VI	GCNNNNNNNGC	7 cut(s)	122, 125, 128, 131, 408, 590, 803
HpyF3I	CTNAG	2 cut(s)	779, 798
Hsp92II	CATG	9 cut(s)	20, 221, 344, 388, 506, 574, 593, 749, 901
Ksp22I	TGATCA	1 cut(s)	162
Kzo9I	GATC	3 cut(s)	162, 277, 519
LmnI	GCTCC	3 cut(s)	173, 221, 482
LpnPI	CCDG	9 cut(s)	21, 48, 69, 153, 190, 384, 513, 537, 798
Lsp1109I	GCAGC	9 cut(s)	106, 109, 112, 115, 118, 128, 518, 549, 790
MaeI	CTAG	4 cut(s)	377, 476, 555, 692
MaeIII	GTNAC	3 cut(s)	109, 316, 681
MalI	GATC	3 cut(s)	164, 279, 521
MboI	GATC	3 cut(s)	162, 277, 519
MflI	RGATCY	1 cut(s)	277
MluCI	AATT	5 cut(s)	10, 283, 405, 449, 673
MlyI	GAGTC	3 cut(s)	200, 213, 836
MmeI	TCCRAC	2 cut(s)	460, 783
MnlI	CCTC	7 cut(s)	42, 55, 58, 61, 440, 793, 860
MroXI	GAANNNNTTC	3 cut(s)	43, 583, 716
MseI	TTAA	4 cut(s)	72, 348, 498, 765
MslI	CAYNNNNRTG	1 cut(s)	312
MspA1I	CMGCKG	2 cut(s)	119, 180
MspI	CCGG	1 cut(s)	524
MspR9I	CCNGG	2 cut(s)	36, 524
MvaI	CCWGG	1 cut(s)	36
MwoI	GCNNNNNNNGC	7 cut(s)	122, 125, 128, 131, 408, 590, 803
NciI	CCSGG	1 cut(s)	524
NcoI	CCATGG	1 cut(s)	570
NdeII	GATC	3 cut(s)	162, 277, 519
NlaIII	CATG	9 cut(s)	20, 221, 344, 388, 506, 574, 593, 749, 901
NlaIV	GGNNCC	2 cut(s)	97, 175
NmuCI	GTSAC	2 cut(s)	109, 681
NspI	RCATGY	4 cut(s)	344, 506, 593, 901
NspV	TTCGAA	2 cut(s)	83, 605
PcsI	WCGNNNNNNNCGW	2 cut(s)	309, 707
PdmI	GAANNNNTTC	3 cut(s)	43, 583, 716
PfeI	GAWTC	2 cut(s)	44, 263
PfoI	TCCNGGA	1 cut(s)	34
PleI	GAGTC	3 cut(s)	199, 212, 835
PpsI	GAGTC	3 cut(s)	199, 212, 835
PpuMI	RGGWCCY	1 cut(s)	775
Psp5II	RGGWCCY	1 cut(s)	775
Psp6I	CCWGG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	2 cut(s)	97, 175
PspPI	GGNCC	2 cut(s)	4, 775
PspPPI	RGGWCCY	1 cut(s)	775
PstNI	CAGNNNCTG	2 cut(s)	119, 122
PsuI	RGATCY	1 cut(s)	277
PvuII	CAGCTG	1 cut(s)	119
RseI	CAYNNNNRTG	1 cut(s)	312
SaqAI	TTAA	4 cut(s)	72, 348, 498, 765
Sau3AI	GATC	3 cut(s)	162, 277, 519
Sau96I	GGNCC	2 cut(s)	4, 775
SchI	GAGTC	3 cut(s)	200, 213, 836
ScrFI	CCNGG	2 cut(s)	36, 524
SfuI	TTCGAA	2 cut(s)	83, 605
SinI	GGWCC	1 cut(s)	775
SmiMI	CAYNNNNRTG	1 cut(s)	312
Sse9I	AATT	5 cut(s)	10, 283, 405, 449, 673
SsiI	CCGC	6 cut(s)	7, 180, 239, 294, 576, 638
SspMI	CTAG	4 cut(s)	377, 476, 555, 692
StyD4I	CCNGG	2 cut(s)	34, 522
StyI	CCWWGG	2 cut(s)	570, 887
TaaI	ACNGT	2 cut(s)	614, 662
TaqI	TCGA	4 cut(s)	83, 336, 432, 605
TasI	AATT	5 cut(s)	10, 283, 405, 449, 673
TauI	GCSGC	2 cut(s)	183, 641
TfiI	GAWTC	2 cut(s)	44, 263
Tru1I	TTAA	4 cut(s)	72, 348, 498, 765
Tru9I	TTAA	4 cut(s)	72, 348, 498, 765
TscAI	CASTG	3 cut(s)	165, 172, 556
TseFI	GTSAC	2 cut(s)	109, 681
TseI	GCWGC	9 cut(s)	116, 119, 122, 125, 128, 131, 506, 537, 803
Tsp45I	GTSAC	2 cut(s)	109, 681
TspDTI	ATGAA	2 cut(s)	279, 644
TspGWI	ACGGA	1 cut(s)	753
TspRI	CASTG	3 cut(s)	165, 172, 556
VpaK11BI	GGWCC	1 cut(s)	775
XapI	RAATTY	2 cut(s)	283, 449
XceI	RCATGY	4 cut(s)	344, 506, 593, 901
XmnI	GAANNNNTTC	3 cut(s)	43, 583, 716
XspI	CTAG	4 cut(s)	377, 476, 555, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.