Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001933

Physical Location & Seq

Genomic Coordinates Reverse (-)

49748010 .. 49748547

Gene Structure 538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00034310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCGGGATTCTCTTATCTCTCTACTGCTACAAGAAGGCTTGAAGGTAAGGTAGCACTAATTACTAGCGGAGCCAGTGGCATCGAGGAATCCACCGCAAGACTCTTCTCCAAACATGGCGCTAAAGTTGTAATCGCCGACGTGCAAGATGACTTGGGTCAATCCGTCCGAAAAGACCTGAACCCTTCCTTGACTACCTTCGTCCATTGCGACGTGACAAATGAAAAAGACGTTGAAAACACCGTGAACACGACCACCACCAAGTATGGAAAGCTAGACATTATGTTGAACAACGCCGGCATCATCGAAATGGCCAAGCTGAACATTCTCGACAACAACAAGGCTGAGTTCGAACAGGTCCTCAAAGTGAACCCGGACGATGTCTTCTGGGGATCAAGCACGCAGCTCGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

137

Amino Acids

14.89

Weight (kDa)

5.11

Isoelectric Point (pI)

28.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	17 - 133	1.7e-22	short chain dehydrogenase
adh_short_C2	PF13561	26 - 125	1.3e-21	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23771 FvH4_3g25650 FvH4_3g25660
malus_domestica	MD11G1171900.v1.1 MD11G1172300.v1.1 MD12G1032600.v1.1
prunus_persica	Prupe.6G138400_v2.0.a1 Prupe.6G138600_v2.0.a1 Prupe.6G138700_v2.0.a1 Prupe.6G138800_v2.0.a1
pyrus_communis	pycom11g14280 pycom11g14340 pycom11g14350 pycom11g14410
rosa_chinensis	RchiOBHm_Chr5g0047121 RchiOBHm_Chr5g0047151
rosa_laevigata	RLG00000034467 RLG00000034469 RLG00000034471 RLG00000034472 RLG00000034473
rosa_multiflora	Rmu_co8232047.1_g000001 Rmu_co8263687.1_g000001 Rmu_sc0001565.1_g000029 Rmu_sc0003154.1_g000029 Rmu_sc0005145.1_g000014 Rmu_sc0019535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034260 Rroxscaffold_1G00034290 Rroxscaffold_1G00034310
rosa_rugosa	Rorug05G0234100 Rorug05G0234200 Rorug05G0234400 Rorug05G0234500 Rorug05G0234700
rosa_samantha	Rh5AG313100 Rh5AG313200 Rh5BG322100 Rh5CG348500 Rh5CG348600 Rh5CG348700 Rh5CG348900 Rh5CG349100 Rh5DG333100 Rh5DG333200
rosa_wichuraiana	Rw5G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	5, 69, 96
AclWI	GGATC	1 cut(s)	400
AcoI	YGGCCR	1 cut(s)	312
AgsI	TTSAA	3 cut(s)	44, 236, 289
AjiI	CACGTC	2 cut(s)	142, 214
AluBI	AGCT	3 cut(s)	274, 319, 406
AluI	AGCT	3 cut(s)	274, 319, 406
AlwI	GGATC	1 cut(s)	400
Ama87I	CYCGRG	1 cut(s)	407
AoxI	GGCC	1 cut(s)	312
ApeKI	GCWGC	1 cut(s)	403
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	358
AsuC2I	CCSGG	1 cut(s)	374
AsuII	TTCGAA	1 cut(s)	351
AvaI	CYCGRG	1 cut(s)	407
AvaII	GGWCC	1 cut(s)	358
BalI	TGGCCA	1 cut(s)	314
BbsI	GAAGAC	1 cut(s)	376
BcgI	CGANNNNNNTGC	1 cut(s)	388
BcnI	CCSGG	1 cut(s)	374
BfaI	CTAG	2 cut(s)	66, 275
BfoI	RGCGCY	1 cut(s)	123
BisI	GCNGC	1 cut(s)	404
BlsI	GCNGC	1 cut(s)	405
Bme1390I	CCNGG	1 cut(s)	374
Bme18I	GGWCC	1 cut(s)	358
BmeT110I	CYCGRG	1 cut(s)	407
BmgBI	CACGTC	2 cut(s)	142, 214
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	374
BmsI	GCATC	2 cut(s)	90, 309
BoxI	GACNNNNGTC	1 cut(s)	156
BpiI	GAAGAC	1 cut(s)	376
Bpu14I	TTCGAA	1 cut(s)	351
BpuMI	CCSGG	1 cut(s)	374
Bse118I	RCCGGY	1 cut(s)	296
Bse1I	ACTGG	1 cut(s)	75
Bse3DI	GCAATG	1 cut(s)	205
BseMI	GCAATG	1 cut(s)	205
BseMII	CTCAG	1 cut(s)	336
BseNI	ACTGG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	314
BsiHKCI	CYCGRG	1 cut(s)	407
BsiSI	CCGG	2 cut(s)	297, 374
BsnI	GGCC	1 cut(s)	314
BsoBI	CYCGRG	1 cut(s)	407
Bsp119I	TTCGAA	1 cut(s)	351
Bsp143I	GATC	1 cut(s)	392
BspACI	CCGC	3 cut(s)	5, 69, 96
BspANI	GGCC	1 cut(s)	314
BspCNI	CTCAG	1 cut(s)	337
BspLI	GGNNCC	1 cut(s)	73
BspPI	GGATC	1 cut(s)	400
BspT104I	TTCGAA	1 cut(s)	351
BsrDI	GCAATG	1 cut(s)	205
BsrFI	RCCGGY	1 cut(s)	296
BsrI	ACTGG	1 cut(s)	75
BssAI	RCCGGY	1 cut(s)	296
BssMI	GATC	1 cut(s)	392
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	1 cut(s)	110
BstBI	TTCGAA	1 cut(s)	351
BstC8I	GCNNGC	2 cut(s)	298, 401
BstDEI	CTNAG	1 cut(s)	345
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	1 cut(s)	395
BstMBI	GATC	1 cut(s)	392
BstPAI	GACNNNNGTC	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	372
BstV2I	GAAGAC	1 cut(s)	376
BsuRI	GGCC	1 cut(s)	314
BtrI	CACGTC	2 cut(s)	142, 214
BtsIMutI	CAGTG	1 cut(s)	82
Cac8I	GCNNGC	2 cut(s)	298, 401
CfoI	GCGC	1 cut(s)	122
Cfr10I	RCCGGY	1 cut(s)	296
Cfr13I	GGNCC	1 cut(s)	358
CviAII	CATG	1 cut(s)	116
CviJI	RGCY	7 cut(s)	40, 74, 274, 314, 319, 344, 406
CviKI_1	RGCY	7 cut(s)	40, 74, 274, 314, 319, 344, 406
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	1 cut(s)	394
DpnII	GATC	1 cut(s)	392
EaeI	YGGCCR	1 cut(s)	312
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Eco47I	GGWCC	1 cut(s)	358
Eco88I	CYCGRG	1 cut(s)	407
EcoO109I	RGGNCCY	1 cut(s)	358
FaeI	CATG	1 cut(s)	119
FaiI	YATR	3 cut(s)	117, 267, 284
FatI	CATG	1 cut(s)	115
Fnu4HI	GCNGC	1 cut(s)	404
Fsp4HI	GCNGC	1 cut(s)	404
FspBI	CTAG	2 cut(s)	66, 275
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	1 cut(s)	404
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	314
HapII	CCGG	2 cut(s)	297, 374
HhaI	GCGC	1 cut(s)	122
Hin1II	CATG	1 cut(s)	119
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HinfI	GANTC	3 cut(s)	9, 89, 102
HpaII	CCGG	2 cut(s)	297, 374
Hpy166II	GTNNAC	2 cut(s)	247, 370
Hpy188I	TCNGA	1 cut(s)	170
Hpy188III	TCNNGA	1 cut(s)	329
Hpy8I	GTNNAC	2 cut(s)	247, 370
Hpy99I	CGWCG	2 cut(s)	143, 215
HpyAV	CCTTC	4 cut(s)	30, 38, 195, 208
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	3 cut(s)	141, 213, 231
HpyCH4V	TGCA	1 cut(s)	145
HpyF3I	CTNAG	1 cut(s)	345
HpySE526I	ACGT	3 cut(s)	141, 213, 231
Hsp92II	CATG	1 cut(s)	119
HspAI	GCGC	1 cut(s)	120
KroI	GCCGGC	1 cut(s)	296
KroNI	GCCGGC	1 cut(s)	298
Kzo9I	GATC	1 cut(s)	392
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	6 cut(s)	88, 191, 310, 341, 373, 387
LweI	GCATC	2 cut(s)	90, 309
MaeI	CTAG	2 cut(s)	66, 275
MaeII	ACGT	3 cut(s)	141, 213, 231
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	1 cut(s)	394
MboI	GATC	1 cut(s)	392
MboII	GAAGA	2 cut(s)	97, 376
MlsI	TGGCCA	1 cut(s)	314
MluCI	AATT	1 cut(s)	60
MluNI	TGGCCA	1 cut(s)	314
MlyI	GAGTC	1 cut(s)	96
MnlI	CCTC	2 cut(s)	79, 371
Mox20I	TGGCCA	1 cut(s)	314
MroNI	GCCGGC	1 cut(s)	296
MscI	TGGCCA	1 cut(s)	314
MslI	CAYNNNNRTG	1 cut(s)	308
Msp20I	TGGCCA	1 cut(s)	314
MspI	CCGG	2 cut(s)	297, 374
MspR9I	CCNGG	1 cut(s)	374
NaeI	GCCGGC	1 cut(s)	298
NciI	CCSGG	1 cut(s)	374
NdeII	GATC	1 cut(s)	392
NgoMIV	GCCGGC	1 cut(s)	296
NlaIII	CATG	1 cut(s)	119
NlaIV	GGNNCC	1 cut(s)	73
NmuCI	GTSAC	1 cut(s)	214
NspV	TTCGAA	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PdiI	GCCGGC	1 cut(s)	298
PfeI	GAWTC	2 cut(s)	9, 89
PflFI	GACNNNGTC	1 cut(s)	380
PkrI	GCNGC	1 cut(s)	405
PleI	GAGTC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	96
PpuMI	RGGWCCY	1 cut(s)	358
PshAI	GACNNNNGTC	1 cut(s)	156
Psp5II	RGGWCCY	1 cut(s)	358
PspN4I	GGNNCC	1 cut(s)	73
PspPI	GGNCC	1 cut(s)	358
PspPPI	RGGWCCY	1 cut(s)	358
PsyI	GACNNNGTC	1 cut(s)	380
RseI	CAYNNNNRTG	1 cut(s)	308
SatI	GCNGC	1 cut(s)	404
Sau3AI	GATC	1 cut(s)	392
Sau96I	GGNCC	1 cut(s)	358
SchI	GAGTC	1 cut(s)	96
ScrFI	CCNGG	1 cut(s)	374
SfaNI	GCATC	2 cut(s)	90, 309
SfuI	TTCGAA	1 cut(s)	351
SinI	GGWCC	1 cut(s)	358
SmiMI	CAYNNNNRTG	1 cut(s)	308
Sse9I	AATT	1 cut(s)	60
SsiI	CCGC	3 cut(s)	5, 69, 96
SspMI	CTAG	2 cut(s)	66, 275
StyD4I	CCNGG	1 cut(s)	372
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	3 cut(s)	144, 216, 234
TaqI	TCGA	4 cut(s)	84, 306, 330, 351
TasI	AATT	1 cut(s)	60
TfiI	GAWTC	2 cut(s)	9, 89
TscAI	CASTG	1 cut(s)	82
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	1 cut(s)	403
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	1 cut(s)	237
TspGWI	ACGGA	1 cut(s)	154
TspRI	CASTG	1 cut(s)	82
Tth111I	GACNNNGTC	1 cut(s)	380
VpaK11BI	GGWCC	1 cut(s)	358
XspI	CTAG	2 cut(s)	66, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.