Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001933

Physical Location & Seq

Genomic Coordinates Forward (+)

45279936 .. 45280589

Gene Structure 654 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG313100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCGAGCTTCCTATTACTCTCGGCTGCTGCAAGAAGGCTTGAAAATAAGGTAGCAGTGATCACCAGTGGAGCCAGTGGCATCGGAGAATCCACTGCCAGACTCTTCTCCAGACACGGCGCTAAAGTAGTGATCGCCGACGTGCAAGACGACTTGGGCCAATCCGTTTGTAGAGACCTAAACCCTTTATCCACCACCTTCATCCATTGTGATGTGACGAATGAAAAAGATGTCGAAAATGCTGTGAACACGGCCACCACCAAGTATGGAAAGCTAGACATTATGTTCAACAACGCCGACATCAACGTCGTAACCAAGCCGAACATCCTCGACAACAACAAGGCCGATTTCAAGCAGGTCCTAGGAGTGAACCTGATCGGTGTCTTCTTGGGGATCAAGCATGCAGCTCAGGTGATGATTGGAGCTCGAAAAGGGTCTATTATCAACACGGCTAGCGTTACCTCAATCATAGGGGGCGGTTCGACACATGCATACACAAGTTCAAAGCATGGAGTTGTGGGGCTCACGAAGAACATGGAGGTGGAGCTAGGAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

185

Amino Acids

19.51

Weight (kDa)

7.81

Isoelectric Point (pI)

17.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	17 - 184	6.1e-41	short chain dehydrogenase
KR	PF08659	20 - 167	4e-06	KR domain
adh_short_C2	PF13561	25 - 184	4.7e-38	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23771 FvH4_3g25650 FvH4_3g25660
malus_domestica	MD11G1171900.v1.1 MD11G1172300.v1.1 MD12G1032600.v1.1
prunus_persica	Prupe.6G138400_v2.0.a1 Prupe.6G138600_v2.0.a1 Prupe.6G138700_v2.0.a1 Prupe.6G138800_v2.0.a1
pyrus_communis	pycom11g14280 pycom11g14340 pycom11g14350 pycom11g14410
rosa_chinensis	RchiOBHm_Chr5g0047121 RchiOBHm_Chr5g0047151
rosa_laevigata	RLG00000034467 RLG00000034469 RLG00000034471 RLG00000034472 RLG00000034473
rosa_multiflora	Rmu_co8232047.1_g000001 Rmu_co8263687.1_g000001 Rmu_sc0001565.1_g000029 Rmu_sc0003154.1_g000029 Rmu_sc0005145.1_g000014 Rmu_sc0019535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034260 Rroxscaffold_1G00034290 Rroxscaffold_1G00034310
rosa_rugosa	Rorug05G0234100 Rorug05G0234200 Rorug05G0234400 Rorug05G0234500 Rorug05G0234700
rosa_samantha	Rh5AG313100 Rh5AG313200 Rh5BG322100 Rh5CG348500 Rh5CG348600 Rh5CG348700 Rh5CG348900 Rh5CG349100 Rh5DG333100 Rh5DG333200
rosa_wichuraiana	Rw5G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	305
Acc36I	ACCTGC	1 cut(s)	346
AciI	CCGC	1 cut(s)	477
AclWI	GGATC	1 cut(s)	401
AcoI	YGGCCR	1 cut(s)	252
AgsI	TTSAA	4 cut(s)	44, 289, 352, 504
AjiI	CACGTC	1 cut(s)	142
AluBI	AGCT	5 cut(s)	9, 274, 407, 425, 547
AluI	AGCT	5 cut(s)	9, 274, 407, 425, 547
Alw21I	GWGCWC	1 cut(s)	427
Alw26I	GTCTC	1 cut(s)	168
AlwI	GGATC	1 cut(s)	401
AoxI	GGCC	3 cut(s)	157, 252, 342
ApeKI	GCWGC	3 cut(s)	26, 29, 404
AspA2I	CCTAGG	1 cut(s)	361
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	2 cut(s)	157, 358
AsuHPI	GGTGA	2 cut(s)	55, 424
AsuNHI	GCTAGC	1 cut(s)	452
AvaII	GGWCC	1 cut(s)	358
AvrII	CCTAGG	1 cut(s)	361
BanII	GRGCYC	2 cut(s)	427, 525
BbsI	GAAGAC	1 cut(s)	376
Bbv12I	GWGCWC	1 cut(s)	427
BbvI	GCAGC	3 cut(s)	13, 16, 416
BceAI	ACGGC	3 cut(s)	133, 267, 465
BclI	TGATCA	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	4 cut(s)	275, 362, 453, 548
BfoI	RGCGCY	1 cut(s)	123
BfuAI	ACCTGC	1 cut(s)	346
BisI	GCNGC	3 cut(s)	27, 30, 405
BlnI	CCTAGG	1 cut(s)	361
BlsI	GCNGC	3 cut(s)	28, 31, 406
Bme18I	GGWCC	1 cut(s)	358
BmgBI	CACGTC	1 cut(s)	142
BmgT120I	GGNCC	2 cut(s)	157, 358
BmiI	GGNNCC	1 cut(s)	73
BmsI	GCATC	1 cut(s)	90
BmtI	GCTAGC	1 cut(s)	456
BpiI	GAAGAC	1 cut(s)	376
BpmI	CTGGAG	1 cut(s)	94
Bpu10I	CCTNAGC	1 cut(s)	408
BsaI	GGTCTC	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	361
Bse1I	ACTGG	2 cut(s)	66, 75
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	2 cut(s)	201, 324
BseMII	CTCAG	1 cut(s)	422
BseNI	ACTGG	2 cut(s)	66, 75
BseXI	GCAGC	3 cut(s)	13, 16, 416
BshFI	GGCC	3 cut(s)	159, 254, 344
BsiHKAI	GWGCWC	1 cut(s)	427
BsmAI	GTCTC	1 cut(s)	168
BsnI	GGCC	3 cut(s)	159, 254, 344
Bso31I	GGTCTC	1 cut(s)	168
Bsp1286I	GDGCHC	2 cut(s)	427, 525
Bsp143I	GATC	4 cut(s)	60, 132, 375, 393
BspACI	CCGC	1 cut(s)	477
BspANI	GGCC	3 cut(s)	159, 254, 344
BspCNI	CTCAG	1 cut(s)	421
BspLI	GGNNCC	1 cut(s)	73
BspMI	ACCTGC	1 cut(s)	346
BspOI	GCTAGC	1 cut(s)	456
BspPI	GGATC	1 cut(s)	401
BspTNI	GGTCTC	1 cut(s)	168
BsrI	ACTGG	2 cut(s)	66, 75
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	4 cut(s)	60, 132, 375, 393
BssT1I	CCWWGG	1 cut(s)	361
Bst6I	CTCTTC	1 cut(s)	110
BstC8I	GCNNGC	3 cut(s)	7, 402, 454
BstDEI	CTNAG	1 cut(s)	408
BstF5I	GGATG	2 cut(s)	201, 324
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	4 cut(s)	63, 135, 378, 396
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	4 cut(s)	60, 132, 375, 393
BstNSI	RCATGY	2 cut(s)	404, 491
BstV1I	GCAGC	3 cut(s)	13, 16, 416
BstV2I	GAAGAC	1 cut(s)	376
BsuRI	GGCC	3 cut(s)	159, 254, 344
BtrI	CACGTC	1 cut(s)	142
BtsCI	GGATG	2 cut(s)	201, 324
BtsI	GCAGTG	2 cut(s)	63, 93
BtsIMutI	CAGTG	4 cut(s)	63, 73, 82, 93
BveI	ACCTGC	1 cut(s)	346
Cac8I	GCNNGC	3 cut(s)	7, 402, 454
CfoI	GCGC	1 cut(s)	122
Cfr13I	GGNCC	2 cut(s)	157, 358
CviAII	CATG	4 cut(s)	401, 488, 509, 535
DdeI	CTNAG	1 cut(s)	408
DpnI	GATC	4 cut(s)	62, 134, 377, 395
DpnII	GATC	4 cut(s)	60, 132, 375, 393
DrdI	GACNNNNNNGTC	1 cut(s)	305
DseDI	GACNNNNNNGTC	1 cut(s)	305
EaeI	YGGCCR	1 cut(s)	252
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Ecl136II	GAGCTC	1 cut(s)	425
Eco130I	CCWWGG	1 cut(s)	361
Eco24I	GRGCYC	2 cut(s)	427, 525
Eco31I	GGTCTC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	358
Eco53kI	GAGCTC	1 cut(s)	425
EcoICRI	GAGCTC	1 cut(s)	425
EcoO109I	RGGNCCY	1 cut(s)	358
EcoT14I	CCWWGG	1 cut(s)	361
EcoT22I	ATGCAT	1 cut(s)	493
EcoT38I	GRGCYC	2 cut(s)	427, 525
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	4 cut(s)	404, 491, 512, 538
FaiI	YATR	8 cut(s)	267, 284, 402, 470, 489, 493, 510, 536
FatI	CATG	4 cut(s)	400, 487, 508, 534
FbaI	TGATCA	1 cut(s)	60
Fnu4HI	GCNGC	3 cut(s)	27, 30, 405
FokI	GGATG	2 cut(s)	188, 311
FriOI	GRGCYC	2 cut(s)	427, 525
Fsp4HI	GCNGC	3 cut(s)	27, 30, 405
FspBI	CTAG	4 cut(s)	275, 362, 453, 548
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	3 cut(s)	27, 30, 405
GsuI	CTGGAG	1 cut(s)	94
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	3 cut(s)	159, 254, 344
HhaI	GCGC	1 cut(s)	122
Hin1II	CATG	4 cut(s)	404, 491, 512, 538
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HinfI	GANTC	2 cut(s)	89, 102
HphI	GGTGA	2 cut(s)	55, 424
Hpy166II	GTNNAC	2 cut(s)	247, 370
Hpy188I	TCNGA	1 cut(s)	86
Hpy188III	TCNNGA	2 cut(s)	111, 526
Hpy8I	GTNNAC	2 cut(s)	247, 370
Hpy99I	CGWCG	2 cut(s)	143, 311
HpyAV	CCTTC	2 cut(s)	30, 208
HpyCH4IV	ACGT	2 cut(s)	141, 306
HpyCH4V	TGCA	4 cut(s)	32, 145, 404, 491
HpyF3I	CTNAG	1 cut(s)	408
HpySE526I	ACGT	2 cut(s)	141, 306
Hsp92II	CATG	4 cut(s)	404, 491, 512, 538
HspAI	GCGC	1 cut(s)	120
Ksp22I	TGATCA	1 cut(s)	60
Kzo9I	GATC	4 cut(s)	60, 132, 375, 393
LmnI	GCTCC	3 cut(s)	71, 422, 544
LpnPI	CCDG	7 cut(s)	79, 88, 112, 124, 341, 386, 395
Lsp1109I	GCAGC	3 cut(s)	13, 16, 416
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	4 cut(s)	275, 362, 453, 548
MaeII	ACGT	2 cut(s)	141, 306
MaeIII	GTNAC	3 cut(s)	214, 310, 457
MalI	GATC	4 cut(s)	62, 134, 377, 395
MboI	GATC	4 cut(s)	60, 132, 375, 393
MboII	GAAGA	3 cut(s)	97, 376, 541
MhlI	GDGCHC	2 cut(s)	427, 525
MlyI	GAGTC	1 cut(s)	96
MnlI	CCTC	3 cut(s)	338, 472, 532
Mph1103I	ATGCAT	1 cut(s)	493
MseI	TTAA	1 cut(s)	556
MslI	CAYNNNNRTG	2 cut(s)	210, 539
NdeII	GATC	4 cut(s)	60, 132, 375, 393
NheI	GCTAGC	1 cut(s)	452
NlaIII	CATG	4 cut(s)	404, 491, 512, 538
NlaIV	GGNNCC	1 cut(s)	73
NmuCI	GTSAC	1 cut(s)	214
NsiI	ATGCAT	1 cut(s)	493
NspI	RCATGY	2 cut(s)	404, 491
PaeI	GCATGC	1 cut(s)	404
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	3 cut(s)	28, 31, 406
PleI	GAGTC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	96
PpuMI	RGGWCCY	1 cut(s)	358
Psp124BI	GAGCTC	1 cut(s)	427
Psp5II	RGGWCCY	1 cut(s)	358
PspN4I	GGNNCC	1 cut(s)	73
PspPI	GGNCC	2 cut(s)	157, 358
PspPPI	RGGWCCY	1 cut(s)	358
RseI	CAYNNNNRTG	2 cut(s)	210, 539
SacI	GAGCTC	1 cut(s)	427
SaqAI	TTAA	1 cut(s)	556
SatI	GCNGC	3 cut(s)	27, 30, 405
Sau3AI	GATC	4 cut(s)	60, 132, 375, 393
Sau96I	GGNCC	2 cut(s)	157, 358
SchI	GAGTC	1 cut(s)	96
SduI	GDGCHC	2 cut(s)	427, 525
SfaNI	GCATC	1 cut(s)	90
SinI	GGWCC	1 cut(s)	358
SmiMI	CAYNNNNRTG	2 cut(s)	210, 539
SphI	GCATGC	1 cut(s)	404
SsiI	CCGC	1 cut(s)	477
SspMI	CTAG	4 cut(s)	275, 362, 453, 548
SstI	GAGCTC	1 cut(s)	427
StyI	CCWWGG	1 cut(s)	361
TaiI	ACGT	2 cut(s)	144, 309
TaqI	TCGA	4 cut(s)	234, 330, 427, 482
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	1 cut(s)	556
Tru9I	TTAA	1 cut(s)	556
TscAI	CASTG	4 cut(s)	63, 73, 82, 100
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	3 cut(s)	26, 29, 404
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	2 cut(s)	190, 237
TspGWI	ACGGA	1 cut(s)	154
TspRI	CASTG	4 cut(s)	63, 73, 82, 100
VpaK11BI	GGWCC	1 cut(s)	358
XceI	RCATGY	2 cut(s)	404, 491
XmaJI	CCTAGG	1 cut(s)	361
XspI	CTAG	4 cut(s)	275, 362, 453, 548
Zsp2I	ATGCAT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.