Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001933

Physical Location & Seq

Genomic Coordinates Forward (+)

44740442 .. 44742960

Gene Structure 2519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G029250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCGAGTTTCCCGTTACTCTCGGCTACTGCAAGAAGGCTTGAAGGTAAGGTAGCAGTGATCACCGGCGGAGCCAGTGGCATCGGATTATCCACCGCTAGACTCTTCTCCAGACACGGTGCTAAAGTCGTGATCGCCGACGTGCAAGATGACTTGGGCCAATCCGTTTGTAGAGATCTGAACCCTTCCTCCACCACCTTCATCCATTGCAACGTGACGAACGAAAAAGACGTCGAAAACGCTGTGAACACTGCCACCGCCAAGTATGGAAAGCTAGACATTATGTTTAACAACGCTGGCTTCAGCGACTTGGCCAAGCTGAACATCCTCGACAACAACAAGGCCGATTTCGAACAAGTCCTCGGAGTGAACTTGGTTGGTGTCTTCTTGGGGATCAAGCACGCAGCTCGAGTGATGATGGACGTTTGCTCGATCATAGGGGGCGCTGCGTCGCATGCGTACACGAGTTCGAAGCATGGAGTTGAGGGGCTCACGAAGAACACAGCGGTAGAGCTCGGACAGTATGGAATACGTGTGAATTGTGTGTCGCCGTATTTGGTGGAGACGCCGTTGACCAAGAAATTTTTGAAGCTCGACAATGAGGGAGTCGGTGGTGTTTACTCCAACCTCAAAGGGGCGGTGCTGAAGGCGGAAGATGTGGCGGAGGCTGTTCTTTACTTGGGAAGTGATGAGTCCAAGTATGTTAGTGGGCATAATTTGATAGTAGATGGAGGCTACACTATTGTCAACTCAAGGTTCTGTATGTTTGAGCAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

259

Amino Acids

27.53

Weight (kDa)

6.3

Isoelectric Point (pI)

20.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	17 - 195	1.4e-43	short chain dehydrogenase
KR	PF08659	20 - 126	1.3e-06	KR domain
adh_short_C2	PF13561	25 - 247	7.6e-58	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23771 FvH4_3g25650 FvH4_3g25660
malus_domestica	MD11G1171900.v1.1 MD11G1172300.v1.1 MD12G1032600.v1.1
prunus_persica	Prupe.6G138400_v2.0.a1 Prupe.6G138600_v2.0.a1 Prupe.6G138700_v2.0.a1 Prupe.6G138800_v2.0.a1
pyrus_communis	pycom11g14280 pycom11g14340 pycom11g14350 pycom11g14410
rosa_chinensis	RchiOBHm_Chr5g0047121 RchiOBHm_Chr5g0047151
rosa_laevigata	RLG00000034467 RLG00000034469 RLG00000034471 RLG00000034472 RLG00000034473
rosa_multiflora	Rmu_co8232047.1_g000001 Rmu_co8263687.1_g000001 Rmu_sc0001565.1_g000029 Rmu_sc0003154.1_g000029 Rmu_sc0005145.1_g000014 Rmu_sc0019535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034260 Rroxscaffold_1G00034290 Rroxscaffold_1G00034310
rosa_rugosa	Rorug05G0234100 Rorug05G0234200 Rorug05G0234400 Rorug05G0234500 Rorug05G0234700
rosa_samantha	Rh5AG313100 Rh5AG313200 Rh5BG322100 Rh5CG348500 Rh5CG348600 Rh5CG348700 Rh5CG348900 Rh5CG349100 Rh5DG333100 Rh5DG333200
rosa_wichuraiana	Rw5G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	234
AciI	CCGC	7 cut(s)	69, 96, 258, 506, 638, 650, 662
AclWI	GGATC	1 cut(s)	401
AcoI	YGGCCR	1 cut(s)	312
AcsI	RAATTY	1 cut(s)	581
AcuI	CTGAAG	2 cut(s)	286, 665
AcyI	GRCGYC	2 cut(s)	231, 566
AfaI	GTAC	1 cut(s)	461
AfiI	CCNNNNNNNGG	1 cut(s)	634
AflIII	ACRYGT	1 cut(s)	532
AgsI	TTSAA	2 cut(s)	44, 589
AjiI	CACGTC	1 cut(s)	142
AloI	GAACNNNNNNTCC	2 cut(s)	173, 205
AluBI	AGCT	5 cut(s)	274, 319, 407, 514, 592
AluI	AGCT	5 cut(s)	274, 319, 407, 514, 592
Alw21I	GWGCWC	1 cut(s)	516
Alw26I	GTCTC	1 cut(s)	557
AlwI	GGATC	1 cut(s)	401
Ama87I	CYCGRG	1 cut(s)	408
AoxI	GGCC	3 cut(s)	157, 312, 342
ApeKI	GCWGC	2 cut(s)	404, 446
ApoI	RAATTY	1 cut(s)	581
ArsI	GACNNNNNNTTYG	2 cut(s)	216, 248
AspLEI	GCGC	1 cut(s)	446
AspS9I	GGNCC	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	55
AsuII	TTCGAA	2 cut(s)	351, 470
AvaI	CYCGRG	1 cut(s)	408
BalI	TGGCCA	1 cut(s)	314
BanII	GRGCYC	2 cut(s)	492, 516
BauI	CACGAG	1 cut(s)	463
BbsI	GAAGAC	1 cut(s)	376
Bbv12I	GWGCWC	1 cut(s)	516
BbvI	GCAGC	2 cut(s)	416, 433
BccI	CCATC	2 cut(s)	412, 722
BceAI	ACGGC	2 cut(s)	535, 553
BcgI	CGANNNNNNTGC	2 cut(s)	389, 423
BclI	TGATCA	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	557
BfaI	CTAG	2 cut(s)	99, 275
BfoI	RGCGCY	1 cut(s)	447
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	2 cut(s)	405, 447
BlsI	GCNGC	2 cut(s)	406, 448
BmeT110I	CYCGRG	1 cut(s)	408
BmgBI	CACGTC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	1 cut(s)	73
BmsI	GCATC	1 cut(s)	90
BpiI	GAAGAC	1 cut(s)	376
BpmI	CTGGAG	1 cut(s)	94
Bpu14I	TTCGAA	2 cut(s)	351, 470
BpuEI	CTTGAG	1 cut(s)	736
BsaAI	YACGTR	1 cut(s)	533
BsaHI	GRCGYC	2 cut(s)	231, 566
BsaJI	CCNNGG	1 cut(s)	361
BsaXI	ACNNNNNCTCC	4 cut(s)	173, 203, 554, 584
Bsc4I	CCNNNNNNNGG	1 cut(s)	634
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	1 cut(s)	75
Bse3DI	GCAATG	1 cut(s)	205
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	2 cut(s)	201, 324
BseLI	CCNNNNNNNGG	1 cut(s)	634
BseMI	GCAATG	1 cut(s)	205
BseNI	ACTGG	1 cut(s)	75
BseXI	GCAGC	2 cut(s)	416, 433
BshFI	GGCC	3 cut(s)	159, 314, 344
BsiHKAI	GWGCWC	1 cut(s)	516
BsiHKCI	CYCGRG	1 cut(s)	408
BsiSI	CCGG	1 cut(s)	66
BslI	CCNNNNNNNGG	1 cut(s)	634
BsmAI	GTCTC	1 cut(s)	557
BsmBI	CGTCTC	1 cut(s)	557
BsnI	GGCC	3 cut(s)	159, 314, 344
BsoBI	CYCGRG	1 cut(s)	408
Bsp119I	TTCGAA	2 cut(s)	351, 470
Bsp1286I	GDGCHC	2 cut(s)	492, 516
Bsp143I	GATC	5 cut(s)	60, 132, 175, 393, 432
BspACI	CCGC	7 cut(s)	69, 96, 258, 506, 638, 650, 662
BspANI	GGCC	3 cut(s)	159, 314, 344
BspLI	GGNNCC	1 cut(s)	73
BspPI	GGATC	1 cut(s)	401
BspT104I	TTCGAA	2 cut(s)	351, 470
BsrDI	GCAATG	1 cut(s)	205
BsrFI	RCCGGY	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	75
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	5 cut(s)	60, 132, 175, 393, 432
BssNI	GRCGYC	2 cut(s)	231, 566
BssSI	CACGAG	1 cut(s)	463
Bst2BI	CACGAG	1 cut(s)	463
Bst4CI	ACNGT	2 cut(s)	119, 522
Bst6I	CTCTTC	1 cut(s)	110
BstACI	GRCGYC	2 cut(s)	231, 566
BstBAI	YACGTR	1 cut(s)	533
BstBI	TTCGAA	2 cut(s)	351, 470
BstC8I	GCNNGC	3 cut(s)	298, 402, 456
BstF5I	GGATG	2 cut(s)	201, 324
BstH2I	RGCGCY	1 cut(s)	447
BstHHI	GCGC	1 cut(s)	446
BstKTI	GATC	5 cut(s)	63, 135, 178, 396, 435
BstMAI	GTCTC	1 cut(s)	557
BstMBI	GATC	5 cut(s)	60, 132, 175, 393, 432
BstMWI	GCNNNNNNNGC	1 cut(s)	455
BstNSI	RCATGY	1 cut(s)	458
BstV1I	GCAGC	2 cut(s)	416, 433
BstV2I	GAAGAC	1 cut(s)	376
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BsuRI	GGCC	3 cut(s)	159, 314, 344
BtrI	CACGTC	1 cut(s)	142
BtsCI	GGATG	2 cut(s)	201, 324
BtsI	GCAGTG	2 cut(s)	63, 249
BtsIMutI	CAGTG	3 cut(s)	63, 82, 249
Cac8I	GCNNGC	3 cut(s)	298, 402, 456
CfoI	GCGC	1 cut(s)	446
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	1 cut(s)	157
CseI	GACGC	2 cut(s)	438, 574
Csp6I	GTAC	1 cut(s)	460
CviAII	CATG	2 cut(s)	455, 476
CviQI	GTAC	1 cut(s)	460
DpnI	GATC	5 cut(s)	62, 134, 177, 395, 434
DpnII	GATC	5 cut(s)	60, 132, 175, 393, 432
EaeI	YGGCCR	1 cut(s)	312
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
EciI	GGCGGA	3 cut(s)	84, 665, 677
Ecl136II	GAGCTC	1 cut(s)	514
Eco24I	GRGCYC	2 cut(s)	492, 516
Eco53kI	GAGCTC	1 cut(s)	514
Eco57I	CTGAAG	2 cut(s)	286, 665
Eco88I	CYCGRG	1 cut(s)	408
EcoICRI	GAGCTC	1 cut(s)	514
EcoT38I	GRGCYC	2 cut(s)	492, 516
Esp3I	CGTCTC	1 cut(s)	557
FaeI	CATG	2 cut(s)	458, 479
FaiI	YATR	9 cut(s)	267, 284, 437, 456, 477, 525, 702, 714, 764
FatI	CATG	2 cut(s)	454, 475
FbaI	TGATCA	1 cut(s)	60
Fnu4HI	GCNGC	2 cut(s)	405, 447
FokI	GGATG	2 cut(s)	188, 311
FriOI	GRGCYC	2 cut(s)	492, 516
Fsp4HI	GCNGC	2 cut(s)	405, 447
FspBI	CTAG	2 cut(s)	99, 275
GlaI	GCGC	1 cut(s)	445
GluI	GCNGC	2 cut(s)	405, 447
GsuI	CTGGAG	1 cut(s)	94
HaeII	RGCGCY	1 cut(s)	447
HaeIII	GGCC	3 cut(s)	159, 314, 344
HapII	CCGG	1 cut(s)	66
HgaI	GACGC	2 cut(s)	438, 574
HhaI	GCGC	1 cut(s)	446
Hin1I	GRCGYC	2 cut(s)	231, 566
Hin1II	CATG	2 cut(s)	458, 479
Hin6I	GCGC	1 cut(s)	444
HinP1I	GCGC	1 cut(s)	444
HincII	GTYRAC	2 cut(s)	573, 748
HindII	GTYRAC	2 cut(s)	573, 748
HinfI	GANTC	3 cut(s)	102, 606, 692
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	6 cut(s)	247, 370, 462, 573, 619, 748
Hpy188I	TCNGA	4 cut(s)	86, 180, 365, 518
Hpy188III	TCNNGA	3 cut(s)	111, 130, 493
Hpy8I	GTNNAC	6 cut(s)	247, 370, 462, 573, 619, 748
Hpy99I	CGWCG	3 cut(s)	143, 236, 454
HpyAV	CCTTC	5 cut(s)	30, 38, 195, 208, 640
HpyCH4III	ACNGT	2 cut(s)	119, 522
HpyCH4IV	ACGT	5 cut(s)	141, 213, 231, 423, 532
HpyCH4V	TGCA	3 cut(s)	32, 145, 210
HpyF10VI	GCNNNNNNNGC	1 cut(s)	455
HpySE526I	ACGT	5 cut(s)	141, 213, 231, 423, 532
Hsp92I	GRCGYC	2 cut(s)	231, 566
Hsp92II	CATG	2 cut(s)	458, 479
HspAI	GCGC	1 cut(s)	444
Ksp22I	TGATCA	1 cut(s)	60
Kzo9I	GATC	5 cut(s)	60, 132, 175, 393, 432
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	4 cut(s)	79, 88, 124, 282
Lsp1109I	GCAGC	2 cut(s)	416, 433
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	2 cut(s)	99, 275
MaeII	ACGT	5 cut(s)	141, 213, 231, 423, 532
MaeIII	GTNAC	2 cut(s)	15, 214
MalI	GATC	5 cut(s)	62, 134, 177, 395, 434
MboI	GATC	5 cut(s)	60, 132, 175, 393, 432
MboII	GAAGA	4 cut(s)	97, 376, 508, 665
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	2 cut(s)	492, 516
MlsI	TGGCCA	1 cut(s)	314
MluCI	AATT	3 cut(s)	538, 581, 715
MluNI	TGGCCA	1 cut(s)	314
MlyI	GAGTC	3 cut(s)	96, 615, 701
MmeI	TCCRAC	1 cut(s)	648
MnlI	CCTC	8 cut(s)	199, 338, 371, 478, 595, 638, 658, 725
Mox20I	TGGCCA	1 cut(s)	314
MscI	TGGCCA	1 cut(s)	314
MseI	TTAA	2 cut(s)	288, 778
Msp20I	TGGCCA	1 cut(s)	314
MspA1I	CMGCKG	1 cut(s)	506
MspI	CCGG	1 cut(s)	66
MwoI	GCNNNNNNNGC	1 cut(s)	455
NdeII	GATC	5 cut(s)	60, 132, 175, 393, 432
NlaIII	CATG	2 cut(s)	458, 479
NlaIV	GGNNCC	1 cut(s)	73
NmuCI	GTSAC	1 cut(s)	214
NspI	RCATGY	1 cut(s)	458
NspV	TTCGAA	2 cut(s)	351, 470
PaeI	GCATGC	1 cut(s)	458
PaeR7I	CTCGAG	1 cut(s)	408
PcsI	WCGNNNNNNNCGW	3 cut(s)	135, 219, 228
PkrI	GCNGC	2 cut(s)	406, 448
PleI	GAGTC	3 cut(s)	96, 614, 700
PpsI	GAGTC	3 cut(s)	96, 614, 700
Ppu21I	YACGTR	1 cut(s)	533
Psp124BI	GAGCTC	1 cut(s)	516
PspN4I	GGNNCC	1 cut(s)	73
PspPI	GGNCC	1 cut(s)	157
PspXI	VCTCGAGB	1 cut(s)	408
PsuI	RGATCY	1 cut(s)	175
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
SacI	GAGCTC	1 cut(s)	516
SaqAI	TTAA	2 cut(s)	288, 778
SatI	GCNGC	2 cut(s)	405, 447
Sau3AI	GATC	5 cut(s)	60, 132, 175, 393, 432
Sau96I	GGNCC	1 cut(s)	157
SchI	GAGTC	3 cut(s)	96, 615, 701
SduI	GDGCHC	2 cut(s)	492, 516
SfaNI	GCATC	1 cut(s)	90
Sfr274I	CTCGAG	1 cut(s)	408
SfuI	TTCGAA	2 cut(s)	351, 470
SgrAI	CRCCGGYG	1 cut(s)	65
SlaI	CTCGAG	1 cut(s)	408
SmlI	CTYRAG	2 cut(s)	408, 751
SmoI	CTYRAG	2 cut(s)	408, 751
SphI	GCATGC	1 cut(s)	458
Sse9I	AATT	3 cut(s)	538, 581, 715
SsiI	CCGC	7 cut(s)	69, 96, 258, 506, 638, 650, 662
SspMI	CTAG	2 cut(s)	99, 275
SstI	GAGCTC	1 cut(s)	516
TaaI	ACNGT	2 cut(s)	119, 522
TaiI	ACGT	5 cut(s)	144, 216, 234, 426, 535
TaqI	TCGA	7 cut(s)	234, 330, 351, 409, 431, 470, 594
TasI	AATT	3 cut(s)	538, 581, 715
Tru1I	TTAA	2 cut(s)	288, 778
Tru9I	TTAA	2 cut(s)	288, 778
TscAI	CASTG	3 cut(s)	63, 82, 256
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	2 cut(s)	404, 446
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	1 cut(s)	190
TspGWI	ACGGA	1 cut(s)	154
TspRI	CASTG	3 cut(s)	63, 82, 256
XapI	RAATTY	1 cut(s)	581
XceI	RCATGY	1 cut(s)	458
XhoI	CTCGAG	1 cut(s)	408
XspI	CTAG	2 cut(s)	99, 275
ZraI	GACGTC	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.