Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001933

Physical Location & Seq

Genomic Coordinates Forward (+)

11259976 .. 11264472

Gene Structure 4497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G138600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGCTATCGGAAATTTCTCATTACTAGCTGCTGCTGCAAGAAGGATGGTCGTCGATGTCATGACTATGGCTCTGACTCGGCTTGAAGGTAAAGTGGCCGTAATCACTGGTGGGGCGAGCGGTATAGGAGAGTCCACTGCAAGACTCTTCTCAAAACATGGAGCTAAAGTTGTGATTGCAGATGTGCAAGACGACTTGGCTGAATCTGTTTGCAGAGACCTAAGCCCTTCGTCCACTTCATTTGTCCATTGCGATGTAACGAAAGAAGAAGACGTCGAAAACGTTGTCCAAACAGCCACAAACAAATATGGAAAGCTAGACATCATGTTCAACAATGCAGGTATAGCTGGCATGGTAAAACCCAACATCCTTGACAATGACAAGATAGAATTTGAGCAAGTGATTAGGGTAAATCTGGTTGGTGCGTTTTTGGGGATCAAACATGCAGCTCGTGTTATGATCCCAGTTGGAAAAGGGCTGGTGAGAAACACGGCCGTAGAGCTTGGACAACACGGTATTCGTGTGAATTGTGTGTCACCGTATATAGTTTCCACGCCTTTAGTGAAGGAGTTCTTTAAGCTTGATGATGATAAACTTCATGGTGTTTATTCCAACCTTAAAGGTGGGGTTCTTAAGGCAGAAGATATTGCTAAAGCTGCTCTTTACTTGGGTAGTGATGAGTCAAAGTATGTTAGTGGGCATAATCTTTTGGTAGATGGAGGCTTCACTATTGTGAACGCAGGGTTTTGCATGTTTGAACAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

256

Amino Acids

27.28

Weight (kDa)

6.08

Isoelectric Point (pI)

19.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23771 FvH4_3g25650 FvH4_3g25660
malus_domestica	MD11G1171900.v1.1 MD11G1172300.v1.1 MD12G1032600.v1.1
prunus_persica	Prupe.6G138400_v2.0.a1 Prupe.6G138600_v2.0.a1 Prupe.6G138700_v2.0.a1 Prupe.6G138800_v2.0.a1
pyrus_communis	pycom11g14280 pycom11g14340 pycom11g14350 pycom11g14410
rosa_chinensis	RchiOBHm_Chr5g0047121 RchiOBHm_Chr5g0047151
rosa_laevigata	RLG00000034467 RLG00000034469 RLG00000034471 RLG00000034472 RLG00000034473
rosa_multiflora	Rmu_co8232047.1_g000001 Rmu_co8263687.1_g000001 Rmu_sc0001565.1_g000029 Rmu_sc0003154.1_g000029 Rmu_sc0005145.1_g000014 Rmu_sc0019535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034260 Rroxscaffold_1G00034290 Rroxscaffold_1G00034310
rosa_rugosa	Rorug05G0234100 Rorug05G0234200 Rorug05G0234400 Rorug05G0234500 Rorug05G0234700
rosa_samantha	Rh5AG313100 Rh5AG313200 Rh5BG322100 Rh5CG348500 Rh5CG348600 Rh5CG348700 Rh5CG348900 Rh5CG349100 Rh5DG333100 Rh5DG333200
rosa_wichuraiana	Rw5G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	276
Acc36I	ACCTGC	1 cut(s)	329
AccBSI	CCGCTC	1 cut(s)	120
AciI	CCGC	1 cut(s)	120
AclI	AACGTT	1 cut(s)	282
AclWI	GGATC	2 cut(s)	443, 454
AcoI	YGGCCR	2 cut(s)	96, 492
AcsI	RAATTY	2 cut(s)	13, 389
AcyI	GRCGYC	1 cut(s)	273
AflII	CTTAAG	1 cut(s)	632
AgsI	TTSAA	3 cut(s)	86, 331, 758
AleI	CACNNNNGTG	1 cut(s)	731
AluBI	AGCT	9 cut(s)	29, 164, 316, 347, 449, 502, 580, 656, 764
AluI	AGCT	9 cut(s)	29, 164, 316, 347, 449, 502, 580, 656, 764
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	2 cut(s)	443, 454
AoxI	GGCC	2 cut(s)	96, 492
ApeKI	GCWGC	5 cut(s)	29, 32, 35, 446, 656
ApoI	RAATTY	2 cut(s)	13, 389
ArsI	GACNNNNNNTTYG	2 cut(s)	270, 302
Asp700I	GAANNNNTTC	1 cut(s)	569
AsuHPI	GGTGA	2 cut(s)	493, 528
BauI	CACGAG	1 cut(s)	450
BbsI	GAAGAC	1 cut(s)	276
BbvI	GCAGC	5 cut(s)	16, 19, 22, 458, 643
BccI	CCATC	2 cut(s)	40, 710
BceAI	ACGGC	3 cut(s)	83, 479, 507
BcoDI	GTCTC	1 cut(s)	210
BfaI	CTAG	2 cut(s)	26, 317
BfrI	CTTAAG	1 cut(s)	632
BfuAI	ACCTGC	1 cut(s)	329
BisI	GCNGC	5 cut(s)	30, 33, 36, 447, 657
BlsI	GCNGC	5 cut(s)	31, 34, 37, 448, 658
BmrI	ACTGGG	1 cut(s)	458
BmuI	ACTGGG	1 cut(s)	458
BpiI	GAAGAC	1 cut(s)	276
Bpu10I	CCTNAGC	1 cut(s)	221
BsaHI	GRCGYC	1 cut(s)	273
BsaI	GGTCTC	1 cut(s)	210
BsaXI	ACNNNNNCTCC	2 cut(s)	153, 183
Bse1I	ACTGG	2 cut(s)	112, 464
Bse3DI	GCAATG	1 cut(s)	247
BseGI	GGATG	2 cut(s)	51, 366
BseMI	GCAATG	1 cut(s)	247
BseNI	ACTGG	2 cut(s)	112, 464
BseX3I	CGGCCG	1 cut(s)	492
BseXI	GCAGC	5 cut(s)	16, 19, 22, 458, 643
Bsh1285I	CGRYCG	1 cut(s)	495
BshFI	GGCC	2 cut(s)	98, 494
BsiEI	CGRYCG	1 cut(s)	495
BsmAI	GTCTC	1 cut(s)	210
BsnI	GGCC	2 cut(s)	98, 494
Bso31I	GGTCTC	1 cut(s)	210
Bsp143I	GATC	2 cut(s)	435, 459
BspACI	CCGC	1 cut(s)	120
BspANI	GGCC	2 cut(s)	98, 494
BspHI	TCATGA	1 cut(s)	60
BspMI	ACCTGC	1 cut(s)	329
BspPI	GGATC	2 cut(s)	443, 454
BspTI	CTTAAG	1 cut(s)	632
BspTNI	GGTCTC	1 cut(s)	210
BsrBI	CCGCTC	1 cut(s)	120
BsrDI	GCAATG	1 cut(s)	247
BsrI	ACTGG	2 cut(s)	112, 464
BssMI	GATC	2 cut(s)	435, 459
BssNI	GRCGYC	1 cut(s)	273
BssSI	CACGAG	1 cut(s)	450
Bst2BI	CACGAG	1 cut(s)	450
Bst4CI	ACNGT	2 cut(s)	515, 540
Bst6I	CTCTTC	1 cut(s)	152
BstACI	GRCGYC	1 cut(s)	273
BstAFI	CTTAAG	1 cut(s)	632
BstC8I	GCNNGC	2 cut(s)	118, 349
BstDEI	CTNAG	1 cut(s)	221
BstF5I	GGATG	2 cut(s)	51, 366
BstKTI	GATC	2 cut(s)	438, 462
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	2 cut(s)	435, 459
BstMCI	CGRYCG	1 cut(s)	495
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 344, 656
BstNSI	RCATGY	2 cut(s)	446, 754
BstV1I	GCAGC	5 cut(s)	16, 19, 22, 458, 643
BstV2I	GAAGAC	1 cut(s)	276
BstZI	CGGCCG	1 cut(s)	492
BsuRI	GGCC	2 cut(s)	98, 494
BtgZI	GCGATG	1 cut(s)	267
BtsCI	GGATG	2 cut(s)	51, 366
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	2 cut(s)	105, 135
BveI	ACCTGC	1 cut(s)	329
Cac8I	GCNNGC	2 cut(s)	118, 349
CciI	TCATGA	1 cut(s)	60
CspCI	CAANNNNNGTGG	2 cut(s)	223, 258
CviAII	CATG	7 cut(s)	61, 158, 325, 352, 443, 599, 751
DdeI	CTNAG	1 cut(s)	221
DpnI	GATC	2 cut(s)	437, 461
DpnII	GATC	2 cut(s)	435, 459
EaeI	YGGCCR	2 cut(s)	96, 492
EagI	CGGCCG	1 cut(s)	492
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
EclXI	CGGCCG	1 cut(s)	492
Eco31I	GGTCTC	1 cut(s)	210
Eco52I	CGGCCG	1 cut(s)	492
FaeI	CATG	7 cut(s)	64, 161, 328, 355, 446, 602, 754
FalI	AAGNNNNNCTT	4 cut(s)	557, 589, 645, 677
FatI	CATG	7 cut(s)	60, 157, 324, 351, 442, 598, 750
Fnu4HI	GCNGC	5 cut(s)	30, 33, 36, 447, 657
FokI	GGATG	2 cut(s)	58, 353
Fsp4HI	GCNGC	5 cut(s)	30, 33, 36, 447, 657
FspBI	CTAG	2 cut(s)	26, 317
GluI	GCNGC	5 cut(s)	30, 33, 36, 447, 657
HaeIII	GGCC	2 cut(s)	98, 494
Hin1I	GRCGYC	1 cut(s)	273
Hin1II	CATG	7 cut(s)	64, 161, 328, 355, 446, 602, 754
HindIII	AAGCTT	2 cut(s)	578, 762
HinfI	GANTC	5 cut(s)	76, 131, 144, 203, 680
HphI	GGTGA	2 cut(s)	493, 528
Hpy166II	GTNNAC	3 cut(s)	135, 234, 736
Hpy188I	TCNGA	2 cut(s)	11, 75
Hpy188III	TCNNGA	1 cut(s)	61
Hpy8I	GTNNAC	3 cut(s)	135, 234, 736
Hpy99I	CGWCG	2 cut(s)	56, 278
HpyAV	CCTTC	4 cut(s)	36, 80, 237, 559
HpyCH4III	ACNGT	2 cut(s)	515, 540
HpyCH4IV	ACGT	2 cut(s)	273, 282
HpyCH4V	TGCA	8 cut(s)	38, 140, 179, 187, 213, 338, 446, 750
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 344, 656
HpyF3I	CTNAG	1 cut(s)	221
HpySE526I	ACGT	2 cut(s)	273, 282
Hsp92I	GRCGYC	1 cut(s)	273
Hsp92II	CATG	7 cut(s)	64, 161, 328, 355, 446, 602, 754
Kzo9I	GATC	2 cut(s)	435, 459
LmnI	GCTCC	1 cut(s)	161
LpnPI	CCDG	7 cut(s)	93, 324, 333, 401, 464, 477, 726
Lsp1109I	GCAGC	5 cut(s)	16, 19, 22, 458, 643
MaeI	CTAG	2 cut(s)	26, 317
MaeII	ACGT	2 cut(s)	273, 282
MaeIII	GTNAC	2 cut(s)	256, 534
MalI	GATC	2 cut(s)	437, 461
MbiI	CCGCTC	1 cut(s)	120
MboI	GATC	2 cut(s)	435, 459
MboII	GAAGA	4 cut(s)	139, 278, 281, 653
MluCI	AATT	3 cut(s)	13, 389, 526
MlyI	GAGTC	4 cut(s)	70, 138, 140, 689
MmeI	TCCRAC	2 cut(s)	448, 636
MnlI	CCTC	1 cut(s)	713
MroXI	GAANNNNTTC	1 cut(s)	569
MseI	TTAA	3 cut(s)	576, 618, 633
MslI	CAYNNNNRTG	3 cut(s)	65, 252, 731
MspCI	CTTAAG	1 cut(s)	632
MwoI	GCNNNNNNNGC	3 cut(s)	35, 344, 656
NdeII	GATC	2 cut(s)	435, 459
NlaIII	CATG	7 cut(s)	64, 161, 328, 355, 446, 602, 754
NmeAIII	GCCGAG	1 cut(s)	58
NmuCI	GTSAC	1 cut(s)	534
NspI	RCATGY	2 cut(s)	446, 754
OliI	CACNNNNGTG	1 cut(s)	731
PagI	TCATGA	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PdmI	GAANNNNTTC	1 cut(s)	569
PfeI	GAWTC	1 cut(s)	203
PkrI	GCNGC	5 cut(s)	31, 34, 37, 448, 658
PleI	GAGTC	4 cut(s)	70, 138, 139, 688
PpsI	GAGTC	4 cut(s)	70, 138, 139, 688
Psp1406I	AACGTT	1 cut(s)	282
RseI	CAYNNNNRTG	3 cut(s)	65, 252, 731
SaqAI	TTAA	3 cut(s)	576, 618, 633
SatI	GCNGC	5 cut(s)	30, 33, 36, 447, 657
Sau3AI	GATC	2 cut(s)	435, 459
SchI	GAGTC	4 cut(s)	70, 138, 140, 689
SmiMI	CAYNNNNRTG	3 cut(s)	65, 252, 731
SmlI	CTYRAG	1 cut(s)	632
SmoI	CTYRAG	1 cut(s)	632
Sse9I	AATT	3 cut(s)	13, 389, 526
SsiI	CCGC	1 cut(s)	120
SspMI	CTAG	2 cut(s)	26, 317
TaaI	ACNGT	2 cut(s)	515, 540
TaiI	ACGT	2 cut(s)	276, 285
TaqI	TCGA	2 cut(s)	54, 276
TasI	AATT	3 cut(s)	13, 389, 526
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	3 cut(s)	576, 618, 633
Tru9I	TTAA	3 cut(s)	576, 618, 633
TscAI	CASTG	2 cut(s)	112, 142
TseFI	GTSAC	1 cut(s)	534
TseI	GCWGC	5 cut(s)	29, 32, 35, 446, 656
Tsp45I	GTSAC	1 cut(s)	534
TspDTI	ATGAA	2 cut(s)	228, 587
TspRI	CASTG	2 cut(s)	112, 142
Vha464I	CTTAAG	1 cut(s)	632
XapI	RAATTY	2 cut(s)	13, 389
XceI	RCATGY	2 cut(s)	446, 754
XmnI	GAANNNNTTC	1 cut(s)	569
XspI	CTAG	2 cut(s)	26, 317
ZraI	GACGTC	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.