Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001933

Physical Location & Seq

Genomic Coordinates Forward (+)

43205704 .. 43206477

Gene Structure 774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034467

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCAAGTTTCCCATTACTCTCGGCTGTTGCAAGAAGGCTTGAAAATAAGGTAGCAGTGATCACTGGTGGAGCCAGTGGCATCGGAGAATCCACCGCCAGACTCTTCTCTAGACACGGCGCTAAAGTAGTGATCGCCGATGTGCAAGACGACTTGGGCCAATCCGTTTGCAGAGACCTAAACCCTTCATCCACTACCTTCATCCATTGTGACGTGACGAATGAAAAAGATGTCGAAAGCCCTGTGAACACGGCCACCGCCAAGTATGGAAAGCTAGACATTATGTTCAACAACGTTGGCATCAATGTTGTAAGCAAACCGAACATCCTCGACAACAGCAAGGCCGATTTCGAGCAGGTCCTAGGAGTGAACCTGGTTGGTGTCTTCTTAGGGATCAAGCATGCAGCTCGGGTGATGATGGGAGCCCGAAAAGGGACTATTATCAACACGGCTAGCGTTACCTCAATCATAGAGGGCAGTGCGATGCATGCGTACACAAGTTCGAAGCATGGAGTTGTGGGGCTCACGAAGAACACGGCGGTGGAGCTAGGAAAGTACGGAATACGTGTGAATTGTGTGTCGCCGTATTTGGTGGAGACGTCGCTGACCAAGAAATTCTTTAAGCTTATGATGAAGGAATTCGTGGTTTTTACTCCAACCTCAACGGGGCGGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

226

Amino Acids

24.06

Weight (kDa)

9.3

Isoelectric Point (pI)

23.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDR	PF23441	11 - 203	6.1e-06	SDR-like rossmann domain
adh_short	PF00106	17 - 206	1.2e-51	short chain dehydrogenase
adh_short_C2	PF13561	25 - 206	1.9e-50	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23771 FvH4_3g25650 FvH4_3g25660
malus_domestica	MD11G1171900.v1.1 MD11G1172300.v1.1 MD12G1032600.v1.1
prunus_persica	Prupe.6G138400_v2.0.a1 Prupe.6G138600_v2.0.a1 Prupe.6G138700_v2.0.a1 Prupe.6G138800_v2.0.a1
pyrus_communis	pycom11g14280 pycom11g14340 pycom11g14350 pycom11g14410
rosa_chinensis	RchiOBHm_Chr5g0047121 RchiOBHm_Chr5g0047151
rosa_laevigata	RLG00000034467 RLG00000034469 RLG00000034471 RLG00000034472 RLG00000034473
rosa_multiflora	Rmu_co8232047.1_g000001 Rmu_co8263687.1_g000001 Rmu_sc0001565.1_g000029 Rmu_sc0003154.1_g000029 Rmu_sc0005145.1_g000014 Rmu_sc0019535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034260 Rroxscaffold_1G00034290 Rroxscaffold_1G00034310
rosa_rugosa	Rorug05G0234100 Rorug05G0234200 Rorug05G0234400 Rorug05G0234500 Rorug05G0234700
rosa_samantha	Rh5AG313100 Rh5AG313200 Rh5BG322100 Rh5CG348500 Rh5CG348600 Rh5CG348700 Rh5CG348900 Rh5CG349100 Rh5DG333100 Rh5DG333200
rosa_wichuraiana	Rw5G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	602
Acc36I	ACCTGC	1 cut(s)	346
AciI	CCGC	4 cut(s)	96, 258, 539, 670
AclI	AACGTT	1 cut(s)	294
AclWI	GGATC	1 cut(s)	401
AcoI	YGGCCR	1 cut(s)	252
AcsI	RAATTY	2 cut(s)	614, 638
AcyI	GRCGYC	1 cut(s)	599
AfaI	GTAC	2 cut(s)	494, 557
AfiI	CCNNNNNNNGG	2 cut(s)	432, 666
AflIII	ACRYGT	1 cut(s)	565
AgsI	TTSAA	2 cut(s)	44, 289
AjiI	CACGTC	1 cut(s)	214
AjnI	CCWGG	1 cut(s)	372
AleI	CACNNNNGTG	1 cut(s)	539
AluBI	AGCT	4 cut(s)	274, 407, 547, 625
AluI	AGCT	4 cut(s)	274, 407, 547, 625
Alw26I	GTCTC	2 cut(s)	168, 590
AlwI	GGATC	1 cut(s)	401
Ama87I	CYCGRG	1 cut(s)	408
AoxI	GGCC	3 cut(s)	157, 252, 342
ApeKI	GCWGC	1 cut(s)	404
ApoI	RAATTY	2 cut(s)	614, 638
Asp700I	GAANNNNTTC	1 cut(s)	638
AspA2I	CCTAGG	1 cut(s)	361
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	2 cut(s)	157, 358
AsuHPI	GGTGA	1 cut(s)	424
AsuII	TTCGAA	1 cut(s)	503
AsuNHI	GCTAGC	1 cut(s)	452
AvaI	CYCGRG	1 cut(s)	408
AvaII	GGWCC	1 cut(s)	358
AvrII	CCTAGG	1 cut(s)	361
BanII	GRGCYC	2 cut(s)	427, 525
BbsI	GAAGAC	1 cut(s)	376
BbvI	GCAGC	1 cut(s)	416
BccI	CCATC	1 cut(s)	412
BceAI	ACGGC	5 cut(s)	133, 267, 465, 552, 568
BcgI	CGANNNNNNTGC	2 cut(s)	389, 423
BciT130I	CCWGG	1 cut(s)	374
BclI	TGATCA	1 cut(s)	60
BcoDI	GTCTC	2 cut(s)	168, 590
BfaI	CTAG	5 cut(s)	111, 275, 362, 453, 548
BfoI	RGCGCY	1 cut(s)	123
BfuAI	ACCTGC	1 cut(s)	346
BisI	GCNGC	1 cut(s)	405
BlnI	CCTAGG	1 cut(s)	361
BlsI	GCNGC	1 cut(s)	406
Bme1390I	CCNGG	1 cut(s)	374
Bme18I	GGWCC	1 cut(s)	358
BmeT110I	CYCGRG	1 cut(s)	408
BmgBI	CACGTC	1 cut(s)	214
BmgT120I	GGNCC	2 cut(s)	157, 358
BmiI	GGNNCC	2 cut(s)	73, 424
BmrFI	CCNGG	1 cut(s)	374
BmsI	GCATC	3 cut(s)	90, 309, 474
BmtI	GCTAGC	1 cut(s)	456
BpiI	GAAGAC	1 cut(s)	376
Bpu14I	TTCGAA	1 cut(s)	503
BsaAI	YACGTR	1 cut(s)	566
BsaHI	GRCGYC	1 cut(s)	599
BsaI	GGTCTC	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	2 cut(s)	432, 666
Bse1I	ACTGG	2 cut(s)	70, 75
BseBI	CCWGG	1 cut(s)	374
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	3 cut(s)	188, 201, 324
BseLI	CCNNNNNNNGG	2 cut(s)	432, 666
BseNI	ACTGG	2 cut(s)	70, 75
BseXI	GCAGC	1 cut(s)	416
BshFI	GGCC	3 cut(s)	159, 254, 344
BsiHKCI	CYCGRG	1 cut(s)	408
BslFI	GGGAC	1 cut(s)	448
BslI	CCNNNNNNNGG	2 cut(s)	432, 666
BsmAI	GTCTC	2 cut(s)	168, 590
BsmBI	CGTCTC	1 cut(s)	590
BsmFI	GGGAC	1 cut(s)	448
BsnI	GGCC	3 cut(s)	159, 254, 344
Bso31I	GGTCTC	1 cut(s)	168
BsoBI	CYCGRG	1 cut(s)	408
Bsp119I	TTCGAA	1 cut(s)	503
Bsp1286I	GDGCHC	2 cut(s)	427, 525
Bsp143I	GATC	3 cut(s)	60, 132, 393
BspACI	CCGC	4 cut(s)	96, 258, 539, 670
BspANI	GGCC	3 cut(s)	159, 254, 344
BspLI	GGNNCC	2 cut(s)	73, 424
BspMI	ACCTGC	1 cut(s)	346
BspOI	GCTAGC	1 cut(s)	456
BspPI	GGATC	1 cut(s)	401
BspT104I	TTCGAA	1 cut(s)	503
BspTNI	GGTCTC	1 cut(s)	168
BsrI	ACTGG	2 cut(s)	70, 75
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	3 cut(s)	60, 132, 393
BssNI	GRCGYC	1 cut(s)	599
BssT1I	CCWWGG	1 cut(s)	361
Bst2UI	CCWGG	1 cut(s)	374
Bst6I	CTCTTC	1 cut(s)	110
BstACI	GRCGYC	1 cut(s)	599
BstBAI	YACGTR	1 cut(s)	566
BstBI	TTCGAA	1 cut(s)	503
BstC8I	GCNNGC	3 cut(s)	402, 454, 489
BstDEI	CTNAG	1 cut(s)	388
BstF5I	GGATG	3 cut(s)	188, 201, 324
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	3 cut(s)	63, 135, 396
BstMAI	GTCTC	2 cut(s)	168, 590
BstMBI	GATC	3 cut(s)	60, 132, 393
BstMWI	GCNNNNNNNGC	1 cut(s)	488
BstNI	CCWGG	1 cut(s)	374
BstNSI	RCATGY	2 cut(s)	404, 491
BstSCI	CCNGG	1 cut(s)	372
BstV1I	GCAGC	1 cut(s)	416
BstV2I	GAAGAC	1 cut(s)	376
BsuRI	GGCC	3 cut(s)	159, 254, 344
BtgZI	GCGATG	1 cut(s)	497
BtrI	CACGTC	1 cut(s)	214
BtsCI	GGATG	3 cut(s)	188, 201, 324
BtsI	GCAGTG	2 cut(s)	63, 484
BtsIMutI	CAGTG	4 cut(s)	63, 63, 82, 484
BveI	ACCTGC	1 cut(s)	346
Cac8I	GCNNGC	3 cut(s)	402, 454, 489
CfoI	GCGC	1 cut(s)	122
Cfr13I	GGNCC	2 cut(s)	157, 358
CsiI	ACCWGGT	1 cut(s)	372
Csp6I	GTAC	2 cut(s)	493, 556
CviAII	CATG	3 cut(s)	401, 488, 509
CviQI	GTAC	2 cut(s)	493, 556
DdeI	CTNAG	1 cut(s)	388
DpnI	GATC	3 cut(s)	62, 134, 395
DpnII	GATC	3 cut(s)	60, 132, 393
EaeI	YGGCCR	1 cut(s)	252
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Eco130I	CCWWGG	1 cut(s)	361
Eco24I	GRGCYC	2 cut(s)	427, 525
Eco31I	GGTCTC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	358
Eco88I	CYCGRG	1 cut(s)	408
EcoO109I	RGGNCCY	1 cut(s)	358
EcoRI	GAATTC	1 cut(s)	638
EcoRII	CCWGG	1 cut(s)	372
EcoT14I	CCWWGG	1 cut(s)	361
EcoT22I	ATGCAT	1 cut(s)	489
EcoT38I	GRGCYC	2 cut(s)	427, 525
ErhI	CCWWGG	1 cut(s)	361
Esp3I	CGTCTC	1 cut(s)	590
FaeI	CATG	3 cut(s)	404, 491, 512
FaiI	YATR	7 cut(s)	267, 284, 402, 470, 489, 510, 629
FalI	AAGNNNNNCTT	2 cut(s)	602, 634
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	3 cut(s)	400, 487, 508
FbaI	TGATCA	1 cut(s)	60
Fnu4HI	GCNGC	1 cut(s)	405
FokI	GGATG	3 cut(s)	175, 188, 311
FriOI	GRGCYC	2 cut(s)	427, 525
Fsp4HI	GCNGC	1 cut(s)	405
FspBI	CTAG	5 cut(s)	111, 275, 362, 453, 548
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	1 cut(s)	405
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	3 cut(s)	159, 254, 344
HhaI	GCGC	1 cut(s)	122
Hin1I	GRCGYC	1 cut(s)	599
Hin1II	CATG	3 cut(s)	404, 491, 512
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HindIII	AAGCTT	1 cut(s)	623
HinfI	GANTC	2 cut(s)	89, 102
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	3 cut(s)	247, 370, 495
Hpy188I	TCNGA	1 cut(s)	86
Hpy188III	TCNNGA	2 cut(s)	111, 526
Hpy8I	GTNNAC	3 cut(s)	247, 370, 495
Hpy99I	CGWCG	1 cut(s)	604
HpyAV	CCTTC	4 cut(s)	30, 195, 208, 628
HpyCH4IV	ACGT	4 cut(s)	213, 294, 565, 599
HpyCH4V	TGCA	5 cut(s)	32, 145, 171, 404, 487
HpyF10VI	GCNNNNNNNGC	1 cut(s)	488
HpyF3I	CTNAG	1 cut(s)	388
HpySE526I	ACGT	4 cut(s)	213, 294, 565, 599
Hsp92I	GRCGYC	1 cut(s)	599
Hsp92II	CATG	3 cut(s)	404, 491, 512
HspAI	GCGC	1 cut(s)	120
Ksp22I	TGATCA	1 cut(s)	60
Kzo9I	GATC	3 cut(s)	60, 132, 393
LmnI	GCTCC	3 cut(s)	71, 422, 544
LpnPI	CCDG	7 cut(s)	51, 88, 112, 255, 341, 359, 386
Lsp1109I	GCAGC	1 cut(s)	416
LweI	GCATC	3 cut(s)	90, 309, 474
MabI	ACCWGGT	1 cut(s)	372
MaeI	CTAG	5 cut(s)	111, 275, 362, 453, 548
MaeII	ACGT	4 cut(s)	213, 294, 565, 599
MaeIII	GTNAC	3 cut(s)	209, 214, 457
MalI	GATC	3 cut(s)	62, 134, 395
MboI	GATC	3 cut(s)	60, 132, 393
MboII	GAAGA	3 cut(s)	97, 376, 541
MhlI	GDGCHC	2 cut(s)	427, 525
MluCI	AATT	3 cut(s)	571, 614, 638
MlyI	GAGTC	1 cut(s)	96
MnlI	CCTC	4 cut(s)	338, 466, 472, 670
Mph1103I	ATGCAT	1 cut(s)	489
MroXI	GAANNNNTTC	1 cut(s)	638
MseI	TTAA	1 cut(s)	621
MslI	CAYNNNNRTG	1 cut(s)	539
MspR9I	CCNGG	1 cut(s)	374
MvaI	CCWGG	1 cut(s)	374
MwoI	GCNNNNNNNGC	1 cut(s)	488
NdeII	GATC	3 cut(s)	60, 132, 393
NheI	GCTAGC	1 cut(s)	452
NlaIII	CATG	3 cut(s)	404, 491, 512
NlaIV	GGNNCC	2 cut(s)	73, 424
NmuCI	GTSAC	2 cut(s)	209, 214
NsiI	ATGCAT	1 cut(s)	489
NspI	RCATGY	2 cut(s)	404, 491
NspV	TTCGAA	1 cut(s)	503
OliI	CACNNNNGTG	1 cut(s)	539
PaeI	GCATGC	2 cut(s)	404, 491
PdmI	GAANNNNTTC	1 cut(s)	638
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	1 cut(s)	406
PleI	GAGTC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	96
Ppu21I	YACGTR	1 cut(s)	566
PpuMI	RGGWCCY	1 cut(s)	358
Psp1406I	AACGTT	1 cut(s)	294
Psp5II	RGGWCCY	1 cut(s)	358
Psp6I	CCWGG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	372
PspN4I	GGNNCC	2 cut(s)	73, 424
PspPI	GGNCC	2 cut(s)	157, 358
PspPPI	RGGWCCY	1 cut(s)	358
RsaI	GTAC	2 cut(s)	494, 557
RsaNI	GTAC	2 cut(s)	493, 556
RseI	CAYNNNNRTG	1 cut(s)	539
SaqAI	TTAA	1 cut(s)	621
SatI	GCNGC	1 cut(s)	405
Sau3AI	GATC	3 cut(s)	60, 132, 393
Sau96I	GGNCC	2 cut(s)	157, 358
SchI	GAGTC	1 cut(s)	96
ScrFI	CCNGG	1 cut(s)	374
SduI	GDGCHC	2 cut(s)	427, 525
SexAI	ACCWGGT	1 cut(s)	372
SfaNI	GCATC	3 cut(s)	90, 309, 474
SfuI	TTCGAA	1 cut(s)	503
SinI	GGWCC	1 cut(s)	358
SmiMI	CAYNNNNRTG	1 cut(s)	539
SphI	GCATGC	2 cut(s)	404, 491
Sse9I	AATT	3 cut(s)	571, 614, 638
SsiI	CCGC	4 cut(s)	96, 258, 539, 670
SspMI	CTAG	5 cut(s)	111, 275, 362, 453, 548
StyD4I	CCNGG	1 cut(s)	372
StyI	CCWWGG	1 cut(s)	361
TaiI	ACGT	4 cut(s)	216, 297, 568, 602
TaqI	TCGA	4 cut(s)	234, 330, 351, 503
TasI	AATT	3 cut(s)	571, 614, 638
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	1 cut(s)	621
Tru9I	TTAA	1 cut(s)	621
TscAI	CASTG	4 cut(s)	63, 70, 82, 484
TseFI	GTSAC	2 cut(s)	209, 214
TseI	GCWGC	1 cut(s)	404
Tsp45I	GTSAC	2 cut(s)	209, 214
TspDTI	ATGAA	4 cut(s)	177, 190, 237, 647
TspGWI	ACGGA	2 cut(s)	154, 573
TspRI	CASTG	4 cut(s)	63, 70, 82, 484
VpaK11BI	GGWCC	1 cut(s)	358
XapI	RAATTY	2 cut(s)	614, 638
XbaI	TCTAGA	1 cut(s)	110
XceI	RCATGY	2 cut(s)	404, 491
XmaJI	CCTAGG	1 cut(s)	361
XmnI	GAANNNNTTC	1 cut(s)	638
XspI	CTAG	5 cut(s)	111, 275, 362, 453, 548
ZraI	GACGTC	1 cut(s)	600
Zsp2I	ATGCAT	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.