Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001933

Physical Location & Seq

Genomic Coordinates Forward (+)

24517319 .. 24520070

Gene Structure 2752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0234200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGAGAGCTTTGAGCTGGGGTCCGATTACGGCAGTCAGGGCTTTGAGCCCAGAAGGGTCGTTACGAGAGCTCGATTATTCACCGGTTTCAGTGGAGCTCGCGCCCTTCTGCAGCGAAGCCCAGTTTGATCGGCTCGTCGCTGAGGCTCAACAGCTCCAGCAGTTGTTCGTCATCATTTGGGCAAGCATTACTCCTAGAATTATCTTCATTATTTTGGCTGGAAGCTTCAAAAGCAATGAAATTATCCTTTTCAAGCACATAAATTGCAGTAAAGGAACAAGGACAATAAGGTGTGCACATTTTGCAATTCATGATGAGGATAGGAGGCAGCCAAGAAAGCCATTCTGCATGGTACAAATTTATTATGCAAATTTGCAACTTTCCAAGATATGTCTTTTCATTGTAAACCGCATCCATTTTGGATTGCTTCTTAGTAGGTTTGATAAAATTCTAAATGAGATGTTAAGTCACTTGGAGCGCCAGCCTAGGAACAAGGAGCGCCGTGTTGCATGGCTTCGTTACGTAGAGCCGCTTTTTAATGGTGTTGGTCTGGTGTTACTAGCTCATTTCAGGCGCATTTTCCCTCTTTTCTTTAAGTGGATGCAAGCTGATGACGATGAGACTGTTTTACTGGTTCTCAAACAGATTGAAACAGTTATAAAGCTAACATGGATTAGGAATACACCATATGTGGAAAAATGCAAGGGTCTGCAGTTCGAAGCAGCCTGGGGCAAGCACAGGGATGATCCAAACTTGGCAACAATTGCTCCCTCTTTAAGTGAAAGAAGATCAACAATGTGTTCTATTAATGCTCTTTGGTGCTTGGACAAGCTGAGCTTTTGCAAAGGAGGTGAAGAATTTCTTTCTCTATTTTGGTTTTGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

295

Amino Acids

34.36

Weight (kDa)

9.12

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23771 FvH4_3g25650 FvH4_3g25660
malus_domestica	MD11G1171900.v1.1 MD11G1172300.v1.1 MD12G1032600.v1.1
prunus_persica	Prupe.6G138400_v2.0.a1 Prupe.6G138600_v2.0.a1 Prupe.6G138700_v2.0.a1 Prupe.6G138800_v2.0.a1
pyrus_communis	pycom11g14280 pycom11g14340 pycom11g14350 pycom11g14410
rosa_chinensis	RchiOBHm_Chr5g0047121 RchiOBHm_Chr5g0047151
rosa_laevigata	RLG00000034467 RLG00000034469 RLG00000034471 RLG00000034472 RLG00000034473
rosa_multiflora	Rmu_co8232047.1_g000001 Rmu_co8263687.1_g000001 Rmu_sc0001565.1_g000029 Rmu_sc0003154.1_g000029 Rmu_sc0005145.1_g000014 Rmu_sc0019535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034260 Rroxscaffold_1G00034290 Rroxscaffold_1G00034310
rosa_rugosa	Rorug05G0234100 Rorug05G0234200 Rorug05G0234400 Rorug05G0234500 Rorug05G0234700
rosa_samantha	Rh5AG313100 Rh5AG313200 Rh5BG322100 Rh5CG348500 Rh5CG348600 Rh5CG348700 Rh5CG348900 Rh5CG349100 Rh5DG333100 Rh5DG333200
rosa_wichuraiana	Rw5G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	659
AccII	CGCG	1 cut(s)	101
AciI	CCGC	2 cut(s)	409, 530
AclWI	GGATC	1 cut(s)	740
AcsI	RAATTY	4 cut(s)	357, 370, 447, 857
AfaI	GTAC	1 cut(s)	354
AgeI	ACCGGT	1 cut(s)	82
AgsI	TTSAA	3 cut(s)	229, 253, 650
AjnI	CCWGG	1 cut(s)	725
Alw21I	GWGCWC	3 cut(s)	72, 99, 298
Alw26I	GTCTC	1 cut(s)	614
Alw44I	GTGCAC	1 cut(s)	294
AlwI	GGATC	1 cut(s)	740
ApaLI	GTGCAC	1 cut(s)	294
ApeKI	GCWGC	3 cut(s)	111, 328, 722
ApoI	RAATTY	4 cut(s)	357, 370, 447, 857
AseI	ATTAAT	1 cut(s)	807
AsiGI	ACCGGT	1 cut(s)	82
Asp700I	GAANNNNTTC	1 cut(s)	858
AspA2I	CCTAGG	1 cut(s)	485
AspLEI	GCGC	4 cut(s)	103, 480, 501, 576
AspS9I	GGNCC	1 cut(s)	20
AsuHPI	GGTGA	2 cut(s)	72, 863
AsuII	TTCGAA	1 cut(s)	717
AvaII	GGWCC	1 cut(s)	20
AvrII	CCTAGG	1 cut(s)	485
BaeGI	GKGCMC	1 cut(s)	298
BanII	GRGCYC	3 cut(s)	50, 72, 99
BarI	GAAGNNNNNNTAC	2 cut(s)	45, 77
Bbv12I	GWGCWC	3 cut(s)	72, 99, 298
BbvCI	CCTCAGC	1 cut(s)	141
BbvI	GCAGC	3 cut(s)	123, 340, 734
BceAI	ACGGC	2 cut(s)	45, 486
BciT130I	CCWGG	1 cut(s)	727
BcoDI	GTCTC	1 cut(s)	614
BfaI	CTAG	3 cut(s)	195, 486, 560
BfmI	CTRYAG	2 cut(s)	109, 710
BfoI	RGCGCY	2 cut(s)	481, 502
BisI	GCNGC	4 cut(s)	112, 329, 530, 723
BlnI	CCTAGG	1 cut(s)	485
BlpI	GCTNAGC	1 cut(s)	833
BlsI	GCNGC	4 cut(s)	113, 330, 531, 724
Bme1390I	CCNGG	1 cut(s)	727
Bme18I	GGWCC	1 cut(s)	20
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	727
BmrI	ACTGGG	1 cut(s)	115
BmsI	GCATC	2 cut(s)	420, 591
BmuI	ACTGGG	1 cut(s)	115
BpmI	CTGGAG	1 cut(s)	140
Bpu10I	CCTNAGC	1 cut(s)	141
Bpu1102I	GCTNAGC	1 cut(s)	833
Bpu14I	TTCGAA	1 cut(s)	717
BsaAI	YACGTR	1 cut(s)	523
BsaJI	CCNNGG	2 cut(s)	485, 726
BsaWI	WCCGGW	1 cut(s)	82
BsaXI	ACNNNNNCTCC	2 cut(s)	751, 781
Bse118I	RCCGGY	1 cut(s)	82
Bse1I	ACTGG	2 cut(s)	121, 636
Bse3DI	GCAATG	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	727
BseDI	CCNNGG	2 cut(s)	485, 726
BseGI	GGATG	3 cut(s)	411, 606, 748
BseMI	GCAATG	1 cut(s)	241
BseMII	CTCAG	2 cut(s)	132, 824
BseNI	ACTGG	2 cut(s)	121, 636
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	3 cut(s)	123, 340, 734
BseYI	CCCAGC	1 cut(s)	15
Bsh1236I	CGCG	1 cut(s)	101
BshTI	ACCGGT	1 cut(s)	82
BsiHKAI	GWGCWC	3 cut(s)	72, 99, 298
BsiSI	CCGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	614
Bsp119I	TTCGAA	1 cut(s)	717
Bsp1286I	GDGCHC	4 cut(s)	50, 72, 99, 298
Bsp143I	GATC	3 cut(s)	127, 745, 788
Bsp1720I	GCTNAGC	1 cut(s)	833
BspACI	CCGC	2 cut(s)	409, 530
BspCNI	CTCAG	2 cut(s)	133, 825
BspFNI	CGCG	1 cut(s)	101
BspHI	TCATGA	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	21
BspMAI	CTGCAG	2 cut(s)	113, 714
BspPI	GGATC	1 cut(s)	740
BspT104I	TTCGAA	1 cut(s)	717
BsrDI	GCAATG	1 cut(s)	241
BsrFI	RCCGGY	1 cut(s)	82
BsrI	ACTGG	2 cut(s)	121, 636
BssAI	RCCGGY	1 cut(s)	82
BssECI	CCNNGG	2 cut(s)	485, 726
BssMI	GATC	3 cut(s)	127, 745, 788
BssT1I	CCWWGG	1 cut(s)	485
Bst2UI	CCWGG	1 cut(s)	727
Bst4CI	ACNGT	2 cut(s)	625, 655
BstAPI	GCANNNNNTGC	2 cut(s)	302, 764
BstBAI	YACGTR	1 cut(s)	523
BstBI	TTCGAA	1 cut(s)	717
BstC8I	GCNNGC	5 cut(s)	99, 184, 482, 606, 734
BstDEI	CTNAG	3 cut(s)	141, 431, 833
BstF5I	GGATG	3 cut(s)	411, 606, 748
BstFNI	CGCG	1 cut(s)	101
BstH2I	RGCGCY	2 cut(s)	481, 502
BstHHI	GCGC	4 cut(s)	103, 480, 501, 576
BstKTI	GATC	3 cut(s)	130, 748, 791
BstMAI	GTCTC	1 cut(s)	614
BstMBI	GATC	3 cut(s)	127, 745, 788
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 231, 302, 337, 764
BstNI	CCWGG	1 cut(s)	727
BstSCI	CCNGG	1 cut(s)	725
BstSFI	CTRYAG	2 cut(s)	109, 710
BstSLI	GKGCMC	1 cut(s)	298
BstSNI	TACGTA	1 cut(s)	523
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	3 cut(s)	123, 340, 734
BtsCI	GGATG	3 cut(s)	411, 606, 748
BtsIMutI	CAGTG	1 cut(s)	96
Cac8I	GCNNGC	5 cut(s)	99, 184, 482, 606, 734
CciI	TCATGA	1 cut(s)	310
CfoI	GCGC	4 cut(s)	103, 480, 501, 576
Cfr10I	RCCGGY	1 cut(s)	82
Cfr13I	GGNCC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	353
CspAI	ACCGGT	1 cut(s)	82
CviAII	CATG	4 cut(s)	311, 349, 510, 669
CviQI	GTAC	1 cut(s)	353
DdeI	CTNAG	3 cut(s)	141, 431, 833
DpnI	GATC	3 cut(s)	129, 747, 790
DpnII	GATC	3 cut(s)	127, 745, 788
Ecl136II	GAGCTC	2 cut(s)	70, 97
Eco105I	TACGTA	1 cut(s)	523
Eco130I	CCWWGG	1 cut(s)	485
Eco24I	GRGCYC	3 cut(s)	50, 72, 99
Eco47I	GGWCC	1 cut(s)	20
Eco53kI	GAGCTC	2 cut(s)	70, 97
EcoICRI	GAGCTC	2 cut(s)	70, 97
EcoRII	CCWGG	1 cut(s)	725
EcoT14I	CCWWGG	1 cut(s)	485
EcoT38I	GRGCYC	3 cut(s)	50, 72, 99
ErhI	CCWWGG	1 cut(s)	485
FaeI	CATG	4 cut(s)	314, 352, 513, 672
FalI	AAGNNNNNCTT	4 cut(s)	821, 853, 846, 878
FatI	CATG	4 cut(s)	310, 348, 509, 668
FauNDI	CATATG	1 cut(s)	688
Fnu4HI	GCNGC	4 cut(s)	112, 329, 530, 723
FokI	GGATG	3 cut(s)	398, 613, 755
FriOI	GRGCYC	3 cut(s)	50, 72, 99
Fsp4HI	GCNGC	4 cut(s)	112, 329, 530, 723
FspBI	CTAG	3 cut(s)	195, 486, 560
GlaI	GCGC	4 cut(s)	102, 479, 500, 575
GluI	GCNGC	4 cut(s)	112, 329, 530, 723
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	140
HaeII	RGCGCY	2 cut(s)	481, 502
HapII	CCGG	1 cut(s)	83
HhaI	GCGC	4 cut(s)	103, 480, 501, 576
Hin1II	CATG	4 cut(s)	314, 352, 513, 672
Hin6I	GCGC	4 cut(s)	101, 478, 499, 574
HinP1I	GCGC	4 cut(s)	101, 478, 499, 574
HindIII	AAGCTT	1 cut(s)	223
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	2 cut(s)	72, 863
Hpy166II	GTNNAC	2 cut(s)	296, 406
Hpy188I	TCNGA	2 cut(s)	24, 887
Hpy188III	TCNNGA	1 cut(s)	311
Hpy8I	GTNNAC	2 cut(s)	296, 406
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	2 cut(s)	47, 115
HpyCH4III	ACNGT	2 cut(s)	625, 655
HpyCH4IV	ACGT	1 cut(s)	522
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 231, 302, 337, 764
HpyF3I	CTNAG	3 cut(s)	141, 431, 833
HpySE526I	ACGT	1 cut(s)	522
Hsp92II	CATG	4 cut(s)	314, 352, 513, 672
HspAI	GCGC	4 cut(s)	101, 478, 499, 574
Kzo9I	GATC	3 cut(s)	127, 745, 788
LmnI	GCTCC	5 cut(s)	94, 159, 475, 496, 772
Lsp1109I	GCAGC	3 cut(s)	123, 340, 734
LweI	GCATC	2 cut(s)	420, 591
MaeI	CTAG	3 cut(s)	195, 486, 560
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	4 cut(s)	60, 467, 518, 555
MalI	GATC	3 cut(s)	129, 747, 790
MboI	GATC	3 cut(s)	127, 745, 788
MboII	GAAGA	3 cut(s)	196, 798, 866
MfeI	CAATTG	1 cut(s)	762
MhlI	GDGCHC	4 cut(s)	50, 72, 99, 298
MluCI	AATT	9 cut(s)	198, 240, 262, 306, 357, 370, 447, 762, 857
MnlI	CCTC	6 cut(s)	136, 310, 318, 594, 781, 842
MroXI	GAANNNNTTC	1 cut(s)	858
MseI	TTAA	5 cut(s)	464, 537, 594, 776, 807
MslI	CAYNNNNRTG	1 cut(s)	741
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	727
MunI	CAATTG	1 cut(s)	762
MvaI	CCWGG	1 cut(s)	727
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	5 cut(s)	38, 231, 302, 337, 764
NdeI	CATATG	1 cut(s)	688
NdeII	GATC	3 cut(s)	127, 745, 788
NlaIII	CATG	4 cut(s)	314, 352, 513, 672
NlaIV	GGNNCC	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	467
NspV	TTCGAA	1 cut(s)	717
PagI	TCATGA	1 cut(s)	310
PdmI	GAANNNNTTC	1 cut(s)	858
PinAI	ACCGGT	1 cut(s)	82
PkrI	GCNGC	4 cut(s)	113, 330, 531, 724
Ppu21I	YACGTR	1 cut(s)	523
PshBI	ATTAAT	1 cut(s)	807
PsiI	TTATAA	1 cut(s)	659
Psp124BI	GAGCTC	2 cut(s)	72, 99
Psp6I	CCWGG	1 cut(s)	725
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	725
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	1 cut(s)	20
PstI	CTGCAG	2 cut(s)	113, 714
RsaI	GTAC	1 cut(s)	354
RsaNI	GTAC	1 cut(s)	353
RseI	CAYNNNNRTG	1 cut(s)	741
SacI	GAGCTC	2 cut(s)	72, 99
SaqAI	TTAA	5 cut(s)	464, 537, 594, 776, 807
SatI	GCNGC	4 cut(s)	112, 329, 530, 723
Sau3AI	GATC	3 cut(s)	127, 745, 788
Sau96I	GGNCC	1 cut(s)	20
ScrFI	CCNGG	1 cut(s)	727
SduI	GDGCHC	4 cut(s)	50, 72, 99, 298
SfaNI	GCATC	2 cut(s)	420, 591
SfcI	CTRYAG	2 cut(s)	109, 710
SfuI	TTCGAA	1 cut(s)	717
SinI	GGWCC	1 cut(s)	20
SmiMI	CAYNNNNRTG	1 cut(s)	741
SnaBI	TACGTA	1 cut(s)	523
Sse9I	AATT	9 cut(s)	198, 240, 262, 306, 357, 370, 447, 762, 857
SsiI	CCGC	2 cut(s)	409, 530
SspMI	CTAG	3 cut(s)	195, 486, 560
SstI	GAGCTC	2 cut(s)	72, 99
StyD4I	CCNGG	1 cut(s)	725
StyI	CCWWGG	1 cut(s)	485
TaaI	ACNGT	2 cut(s)	625, 655
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	2 cut(s)	72, 717
TasI	AATT	9 cut(s)	198, 240, 262, 306, 357, 370, 447, 762, 857
TauI	GCSGC	1 cut(s)	532
Tru1I	TTAA	5 cut(s)	464, 537, 594, 776, 807
Tru9I	TTAA	5 cut(s)	464, 537, 594, 776, 807
TscAI	CASTG	1 cut(s)	96
TseFI	GTSAC	1 cut(s)	467
TseI	GCWGC	3 cut(s)	111, 328, 722
Tsp45I	GTSAC	1 cut(s)	467
TspDTI	ATGAA	4 cut(s)	196, 252, 299, 388
TspRI	CASTG	1 cut(s)	96
VneI	GTGCAC	1 cut(s)	294
VpaK11BI	GGWCC	1 cut(s)	20
VspI	ATTAAT	1 cut(s)	807
XapI	RAATTY	4 cut(s)	357, 370, 447, 857
XmaJI	CCTAGG	1 cut(s)	485
XmnI	GAANNNNTTC	1 cut(s)	858
XspI	CTAG	3 cut(s)	195, 486, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.