Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001933

Physical Location & Seq

Genomic Coordinates Forward (+)

45325836 .. 45328361

Gene Structure 2526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG313200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGCGAGTTTCCCGTTACTCTCGGCTACTGCAAGAAGGCTTGAAGGTAAGGTAGCAGTGATCACTGGCGGAGCCAGTGGCATCGGATTATCCACCGCTAGACTCTTCTCCAGACACGGTGCTAAAGTCGTGATCGCCGACGTGCAAGATGACTTGGGCCAATCCGTTTGTAGAGATCTGAACCCTTCCTCCACCACCTTCATCCATTGCAACGTGACGAACGAAAAAGACGTCGAAAACGCTGTGAACACTGCCACCGCCAAGTATGGAAAGCTAGACATTATGTTTAACAACGCTGGCTTCAGCGACTTGGCCAAGCCGAACATCCTCGACAACAACAAGGCCGATTTCGAACAAGTCCTCGGAGTGAACCTGGTTGGTGTCTTCTTGGGGATCAAGCACGCAGCTCGAGTGATGATGGGAGTTCGAAAAGGGACTATTATCAACACGGCTAGCGTTTGCTCGATCATAGGGGGCGCTGCGTCGCATGCGTACACGAGTTCGAAGCATGGAGTTGAGGGGCTCACGAAGAACACAGCGGTAGAGCTCGGACAGTATGGAATACGTGTGAATTGTGTGTCGCCGTATTTGGTGGAGACGCCGTTGACCAAGAAATTTTTGAAGCTCGACAATGAGGGAGTCGGTGGTGTTTACTCCAACCTCAAAGGGGCGGTGCTGAAGGCGGAAGATGTGGCGGAGGCTGTTCTTTACTTGGGAAGTGATGAGTCCAAGTATGTTAGTGGGCATAATTTGATAGTAGACGGAGGCTACACTATTGTCAACTCAAGGTTCTGTATGTTTGAGCAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

270

Amino Acids

28.6

Weight (kDa)

7.65

Isoelectric Point (pI)

18.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDR	PF23441	13 - 257	1.8e-08	SDR-like rossmann domain
adh_short	PF00106	17 - 206	3.5e-52	short chain dehydrogenase
KR	PF08659	20 - 177	9.8e-08	KR domain
adh_short_C2	PF13561	25 - 258	3.8e-65	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23771 FvH4_3g25650 FvH4_3g25660
malus_domestica	MD11G1171900.v1.1 MD11G1172300.v1.1 MD12G1032600.v1.1
prunus_persica	Prupe.6G138400_v2.0.a1 Prupe.6G138600_v2.0.a1 Prupe.6G138700_v2.0.a1 Prupe.6G138800_v2.0.a1
pyrus_communis	pycom11g14280 pycom11g14340 pycom11g14350 pycom11g14410
rosa_chinensis	RchiOBHm_Chr5g0047121 RchiOBHm_Chr5g0047151
rosa_laevigata	RLG00000034467 RLG00000034469 RLG00000034471 RLG00000034472 RLG00000034473
rosa_multiflora	Rmu_co8232047.1_g000001 Rmu_co8263687.1_g000001 Rmu_sc0001565.1_g000029 Rmu_sc0003154.1_g000029 Rmu_sc0005145.1_g000014 Rmu_sc0019535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034260 Rroxscaffold_1G00034290 Rroxscaffold_1G00034310
rosa_rugosa	Rorug05G0234100 Rorug05G0234200 Rorug05G0234400 Rorug05G0234500 Rorug05G0234700
rosa_samantha	Rh5AG313100 Rh5AG313200 Rh5BG322100 Rh5CG348500 Rh5CG348600 Rh5CG348700 Rh5CG348900 Rh5CG349100 Rh5DG333100 Rh5DG333200
rosa_wichuraiana	Rw5G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	234
AccI	GTMKAC	1 cut(s)	759
AciI	CCGC	7 cut(s)	69, 96, 258, 539, 671, 683, 695
AclWI	GGATC	1 cut(s)	401
AcoI	YGGCCR	1 cut(s)	312
AcsI	RAATTY	1 cut(s)	614
AcuI	CTGAAG	2 cut(s)	286, 698
AcyI	GRCGYC	2 cut(s)	231, 599
AfaI	GTAC	1 cut(s)	494
AfiI	CCNNNNNNNGG	1 cut(s)	667
AflIII	ACRYGT	1 cut(s)	565
AgsI	TTSAA	2 cut(s)	44, 622
AjiI	CACGTC	1 cut(s)	142
AjnI	CCWGG	1 cut(s)	372
AloI	GAACNNNNNNTCC	2 cut(s)	173, 205
AluBI	AGCT	4 cut(s)	274, 407, 547, 625
AluI	AGCT	4 cut(s)	274, 407, 547, 625
Alw21I	GWGCWC	1 cut(s)	549
Alw26I	GTCTC	1 cut(s)	590
AlwI	GGATC	1 cut(s)	401
Ama87I	CYCGRG	1 cut(s)	408
AoxI	GGCC	3 cut(s)	157, 312, 342
ApeKI	GCWGC	2 cut(s)	404, 479
ApoI	RAATTY	1 cut(s)	614
ArsI	GACNNNNNNTTYG	2 cut(s)	216, 248
AspLEI	GCGC	1 cut(s)	479
AspS9I	GGNCC	1 cut(s)	157
AsuII	TTCGAA	3 cut(s)	351, 427, 503
AsuNHI	GCTAGC	1 cut(s)	452
AvaI	CYCGRG	1 cut(s)	408
BalI	TGGCCA	1 cut(s)	314
BanII	GRGCYC	2 cut(s)	525, 549
BauI	CACGAG	1 cut(s)	496
BbsI	GAAGAC	1 cut(s)	376
Bbv12I	GWGCWC	1 cut(s)	549
BbvI	GCAGC	2 cut(s)	416, 466
BccI	CCATC	1 cut(s)	412
BceAI	ACGGC	3 cut(s)	465, 568, 586
BcgI	CGANNNNNNTGC	2 cut(s)	389, 423
BciT130I	CCWGG	1 cut(s)	374
BclI	TGATCA	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	590
BfaI	CTAG	3 cut(s)	99, 275, 453
BfoI	RGCGCY	1 cut(s)	480
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	2 cut(s)	405, 480
BlsI	GCNGC	2 cut(s)	406, 481
Bme1390I	CCNGG	1 cut(s)	374
BmeT110I	CYCGRG	1 cut(s)	408
BmgBI	CACGTC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	374
BmsI	GCATC	1 cut(s)	90
BmtI	GCTAGC	1 cut(s)	456
BpiI	GAAGAC	1 cut(s)	376
BpmI	CTGGAG	1 cut(s)	94
Bpu14I	TTCGAA	3 cut(s)	351, 427, 503
BpuEI	CTTGAG	1 cut(s)	769
BsaAI	YACGTR	1 cut(s)	566
BsaHI	GRCGYC	2 cut(s)	231, 599
BsaJI	CCNNGG	1 cut(s)	361
BsaXI	ACNNNNNCTCC	4 cut(s)	173, 203, 587, 617
Bsc4I	CCNNNNNNNGG	1 cut(s)	667
Bse1I	ACTGG	2 cut(s)	70, 75
Bse3DI	GCAATG	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	374
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	2 cut(s)	201, 324
BseLI	CCNNNNNNNGG	1 cut(s)	667
BseMI	GCAATG	1 cut(s)	205
BseNI	ACTGG	2 cut(s)	70, 75
BseXI	GCAGC	2 cut(s)	416, 466
BshFI	GGCC	3 cut(s)	159, 314, 344
BsiHKAI	GWGCWC	1 cut(s)	549
BsiHKCI	CYCGRG	1 cut(s)	408
BslFI	GGGAC	1 cut(s)	448
BslI	CCNNNNNNNGG	1 cut(s)	667
BsmAI	GTCTC	1 cut(s)	590
BsmBI	CGTCTC	1 cut(s)	590
BsmFI	GGGAC	1 cut(s)	448
BsnI	GGCC	3 cut(s)	159, 314, 344
BsoBI	CYCGRG	1 cut(s)	408
Bsp119I	TTCGAA	3 cut(s)	351, 427, 503
Bsp1286I	GDGCHC	2 cut(s)	525, 549
Bsp143I	GATC	5 cut(s)	60, 132, 175, 393, 465
BspACI	CCGC	7 cut(s)	69, 96, 258, 539, 671, 683, 695
BspANI	GGCC	3 cut(s)	159, 314, 344
BspLI	GGNNCC	1 cut(s)	73
BspOI	GCTAGC	1 cut(s)	456
BspPI	GGATC	1 cut(s)	401
BspT104I	TTCGAA	3 cut(s)	351, 427, 503
BsrDI	GCAATG	1 cut(s)	205
BsrI	ACTGG	2 cut(s)	70, 75
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	5 cut(s)	60, 132, 175, 393, 465
BssNI	GRCGYC	2 cut(s)	231, 599
BssSI	CACGAG	1 cut(s)	496
Bst2BI	CACGAG	1 cut(s)	496
Bst2UI	CCWGG	1 cut(s)	374
Bst4CI	ACNGT	2 cut(s)	119, 555
Bst6I	CTCTTC	1 cut(s)	110
BstACI	GRCGYC	2 cut(s)	231, 599
BstBAI	YACGTR	1 cut(s)	566
BstBI	TTCGAA	3 cut(s)	351, 427, 503
BstC8I	GCNNGC	4 cut(s)	298, 402, 454, 489
BstF5I	GGATG	2 cut(s)	201, 324
BstH2I	RGCGCY	1 cut(s)	480
BstHHI	GCGC	1 cut(s)	479
BstKTI	GATC	5 cut(s)	63, 135, 178, 396, 468
BstMAI	GTCTC	1 cut(s)	590
BstMBI	GATC	5 cut(s)	60, 132, 175, 393, 465
BstMWI	GCNNNNNNNGC	1 cut(s)	488
BstNI	CCWGG	1 cut(s)	374
BstNSI	RCATGY	1 cut(s)	491
BstSCI	CCNGG	1 cut(s)	372
BstV1I	GCAGC	2 cut(s)	416, 466
BstV2I	GAAGAC	1 cut(s)	376
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BsuRI	GGCC	3 cut(s)	159, 314, 344
BtrI	CACGTC	1 cut(s)	142
BtsCI	GGATG	2 cut(s)	201, 324
BtsI	GCAGTG	2 cut(s)	63, 249
BtsIMutI	CAGTG	4 cut(s)	63, 63, 82, 249
Cac8I	GCNNGC	4 cut(s)	298, 402, 454, 489
CfoI	GCGC	1 cut(s)	479
Cfr13I	GGNCC	1 cut(s)	157
CseI	GACGC	2 cut(s)	471, 607
CsiI	ACCWGGT	1 cut(s)	372
Csp6I	GTAC	1 cut(s)	493
CviAII	CATG	2 cut(s)	488, 509
CviQI	GTAC	1 cut(s)	493
DpnI	GATC	5 cut(s)	62, 134, 177, 395, 467
DpnII	GATC	5 cut(s)	60, 132, 175, 393, 465
EaeI	YGGCCR	1 cut(s)	312
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
EciI	GGCGGA	3 cut(s)	84, 698, 710
Ecl136II	GAGCTC	1 cut(s)	547
Eco24I	GRGCYC	2 cut(s)	525, 549
Eco53kI	GAGCTC	1 cut(s)	547
Eco57I	CTGAAG	2 cut(s)	286, 698
Eco88I	CYCGRG	1 cut(s)	408
EcoICRI	GAGCTC	1 cut(s)	547
EcoRII	CCWGG	1 cut(s)	372
EcoT38I	GRGCYC	2 cut(s)	525, 549
Esp3I	CGTCTC	1 cut(s)	590
FaeI	CATG	2 cut(s)	491, 512
FaiI	YATR	9 cut(s)	267, 284, 470, 489, 510, 558, 735, 747, 797
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	2 cut(s)	487, 508
FbaI	TGATCA	1 cut(s)	60
FblI	GTMKAC	1 cut(s)	759
Fnu4HI	GCNGC	2 cut(s)	405, 480
FokI	GGATG	2 cut(s)	188, 311
FriOI	GRGCYC	2 cut(s)	525, 549
Fsp4HI	GCNGC	2 cut(s)	405, 480
FspBI	CTAG	3 cut(s)	99, 275, 453
GlaI	GCGC	1 cut(s)	478
GluI	GCNGC	2 cut(s)	405, 480
GsuI	CTGGAG	1 cut(s)	94
HaeII	RGCGCY	1 cut(s)	480
HaeIII	GGCC	3 cut(s)	159, 314, 344
HgaI	GACGC	2 cut(s)	471, 607
HhaI	GCGC	1 cut(s)	479
Hin1I	GRCGYC	2 cut(s)	231, 599
Hin1II	CATG	2 cut(s)	491, 512
Hin6I	GCGC	1 cut(s)	477
HinP1I	GCGC	1 cut(s)	477
HincII	GTYRAC	2 cut(s)	606, 781
HindII	GTYRAC	2 cut(s)	606, 781
HinfI	GANTC	3 cut(s)	102, 639, 725
Hpy166II	GTNNAC	7 cut(s)	247, 370, 495, 606, 652, 760, 781
Hpy188I	TCNGA	4 cut(s)	86, 180, 365, 551
Hpy188III	TCNNGA	3 cut(s)	111, 130, 526
Hpy8I	GTNNAC	7 cut(s)	247, 370, 495, 606, 652, 760, 781
Hpy99I	CGWCG	3 cut(s)	143, 236, 487
HpyAV	CCTTC	5 cut(s)	30, 38, 195, 208, 673
HpyCH4III	ACNGT	2 cut(s)	119, 555
HpyCH4IV	ACGT	4 cut(s)	141, 213, 231, 565
HpyCH4V	TGCA	3 cut(s)	32, 145, 210
HpyF10VI	GCNNNNNNNGC	1 cut(s)	488
HpySE526I	ACGT	4 cut(s)	141, 213, 231, 565
Hsp92I	GRCGYC	2 cut(s)	231, 599
Hsp92II	CATG	2 cut(s)	491, 512
HspAI	GCGC	1 cut(s)	477
Ksp22I	TGATCA	1 cut(s)	60
Kzo9I	GATC	5 cut(s)	60, 132, 175, 393, 465
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	6 cut(s)	51, 88, 124, 282, 359, 386
Lsp1109I	GCAGC	2 cut(s)	416, 466
LweI	GCATC	1 cut(s)	90
MabI	ACCWGGT	1 cut(s)	372
MaeI	CTAG	3 cut(s)	99, 275, 453
MaeII	ACGT	4 cut(s)	141, 213, 231, 565
MaeIII	GTNAC	2 cut(s)	15, 214
MalI	GATC	5 cut(s)	62, 134, 177, 395, 467
MboI	GATC	5 cut(s)	60, 132, 175, 393, 465
MboII	GAAGA	4 cut(s)	97, 376, 541, 698
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	2 cut(s)	525, 549
MlsI	TGGCCA	1 cut(s)	314
MluCI	AATT	3 cut(s)	571, 614, 748
MluNI	TGGCCA	1 cut(s)	314
MlyI	GAGTC	3 cut(s)	96, 648, 734
MmeI	TCCRAC	1 cut(s)	681
MnlI	CCTC	8 cut(s)	199, 338, 371, 511, 628, 671, 691, 758
Mox20I	TGGCCA	1 cut(s)	314
MscI	TGGCCA	1 cut(s)	314
MseI	TTAA	2 cut(s)	288, 811
Msp20I	TGGCCA	1 cut(s)	314
MspA1I	CMGCKG	1 cut(s)	539
MspR9I	CCNGG	1 cut(s)	374
MvaI	CCWGG	1 cut(s)	374
MwoI	GCNNNNNNNGC	1 cut(s)	488
NdeII	GATC	5 cut(s)	60, 132, 175, 393, 465
NheI	GCTAGC	1 cut(s)	452
NlaIII	CATG	2 cut(s)	491, 512
NlaIV	GGNNCC	1 cut(s)	73
NmuCI	GTSAC	1 cut(s)	214
NspI	RCATGY	1 cut(s)	491
NspV	TTCGAA	3 cut(s)	351, 427, 503
PaeI	GCATGC	1 cut(s)	491
PaeR7I	CTCGAG	1 cut(s)	408
PcsI	WCGNNNNNNNCGW	3 cut(s)	135, 219, 228
PkrI	GCNGC	2 cut(s)	406, 481
PleI	GAGTC	3 cut(s)	96, 647, 733
PpsI	GAGTC	3 cut(s)	96, 647, 733
Ppu21I	YACGTR	1 cut(s)	566
Psp124BI	GAGCTC	1 cut(s)	549
Psp6I	CCWGG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	73
PspPI	GGNCC	1 cut(s)	157
PspXI	VCTCGAGB	1 cut(s)	408
PsuI	RGATCY	1 cut(s)	175
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
SacI	GAGCTC	1 cut(s)	549
SaqAI	TTAA	2 cut(s)	288, 811
SatI	GCNGC	2 cut(s)	405, 480
Sau3AI	GATC	5 cut(s)	60, 132, 175, 393, 465
Sau96I	GGNCC	1 cut(s)	157
SchI	GAGTC	3 cut(s)	96, 648, 734
ScrFI	CCNGG	1 cut(s)	374
SduI	GDGCHC	2 cut(s)	525, 549
SexAI	ACCWGGT	1 cut(s)	372
SfaNI	GCATC	1 cut(s)	90
Sfr274I	CTCGAG	1 cut(s)	408
SfuI	TTCGAA	3 cut(s)	351, 427, 503
SlaI	CTCGAG	1 cut(s)	408
SmlI	CTYRAG	2 cut(s)	408, 784
SmoI	CTYRAG	2 cut(s)	408, 784
SphI	GCATGC	1 cut(s)	491
Sse9I	AATT	3 cut(s)	571, 614, 748
SsiI	CCGC	7 cut(s)	69, 96, 258, 539, 671, 683, 695
SspMI	CTAG	3 cut(s)	99, 275, 453
SstI	GAGCTC	1 cut(s)	549
StyD4I	CCNGG	1 cut(s)	372
TaaI	ACNGT	2 cut(s)	119, 555
TaiI	ACGT	4 cut(s)	144, 216, 234, 568
TaqI	TCGA	8 cut(s)	234, 330, 351, 409, 427, 464, 503, 627
TasI	AATT	3 cut(s)	571, 614, 748
Tru1I	TTAA	2 cut(s)	288, 811
Tru9I	TTAA	2 cut(s)	288, 811
TscAI	CASTG	4 cut(s)	63, 70, 82, 256
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	2 cut(s)	404, 479
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	1 cut(s)	190
TspGWI	ACGGA	2 cut(s)	154, 777
TspRI	CASTG	4 cut(s)	63, 70, 82, 256
XapI	RAATTY	1 cut(s)	614
XceI	RCATGY	1 cut(s)	491
XhoI	CTCGAG	1 cut(s)	408
XmiI	GTMKAC	1 cut(s)	759
XspI	CTAG	3 cut(s)	99, 275, 453
ZraI	GACGTC	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.