Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019535.1

Orthogroup ID

OG0001933

Physical Location & Seq

Genomic Coordinates Forward (+)

880 .. 1701

Gene Structure 822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019535.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

atggtgtcattcaaattaaatttaactattaatggattgatacgtaggcttgaaaataaggtagcagtgatcaccagtggagccagtggcatcggagaatccactgccagactcttctccagacacggctctaaagtagtgatcgctgacgtgcaagacgacttgggccaatccgtttgtagagacctaaaccctttatccaccaccttcatccattgtgatgtgacgaatgaaaaagatgtcgaaaatgctgtgaacacggccaccaccaagtatggaaagctagacattatgtttaacaacgccggcatcaatgtcgtaaccaagccgaacatcctcgacaacaacaaggccgatttcgagcaggtcctaggaatgaacctgatcggtgtcttcttggggatcaagcatgcagctcgggtgatgattggagctcgaaaagggtctattatcaacacggctagcgttacctcaatcatagggggcggttcgacacatgcatacacaagttcgaagcatggagttgtgaggctcacgaagaacacggcggtggagctaggagattacggaatacgtgtgaattgtgtgtcgccgtatttggtgaagacgtcgctaactaagaaattctttaagcttgatgatgaaggagtcggtggtgtttactccaacctcaatggggcggtgctgaaggaggaagatgtggcagaggctgttctttacttggggagtgatgagtccaagtatgttaatgggcataatttgatagtagatggaggctacactattaccaactcaaggttctgtgtgtttgagcaatcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

273

Amino Acids

29.34

Weight (kDa)

7.68

Isoelectric Point (pI)

16.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23771 FvH4_3g25650 FvH4_3g25660
malus_domestica	MD11G1171900.v1.1 MD11G1172300.v1.1 MD12G1032600.v1.1
prunus_persica	Prupe.6G138400_v2.0.a1 Prupe.6G138600_v2.0.a1 Prupe.6G138700_v2.0.a1 Prupe.6G138800_v2.0.a1
pyrus_communis	pycom11g14280 pycom11g14340 pycom11g14350 pycom11g14410
rosa_chinensis	RchiOBHm_Chr5g0047121 RchiOBHm_Chr5g0047151
rosa_laevigata	RLG00000034467 RLG00000034469 RLG00000034471 RLG00000034472 RLG00000034473
rosa_multiflora	Rmu_co8232047.1_g000001 Rmu_co8263687.1_g000001 Rmu_sc0001565.1_g000029 Rmu_sc0003154.1_g000029 Rmu_sc0005145.1_g000014 Rmu_sc0019535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034260 Rroxscaffold_1G00034290 Rroxscaffold_1G00034310
rosa_rugosa	Rorug05G0234100 Rorug05G0234200 Rorug05G0234400 Rorug05G0234500 Rorug05G0234700
rosa_samantha	Rh5AG313100 Rh5AG313200 Rh5BG322100 Rh5CG348500 Rh5CG348600 Rh5CG348700 Rh5CG348900 Rh5CG349100 Rh5DG333100 Rh5DG333200
rosa_wichuraiana	Rw5G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	611
Acc36I	ACCTGC	1 cut(s)	355
AciI	CCGC	3 cut(s)	486, 548, 680
AclWI	GGATC	1 cut(s)	410
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	2 cut(s)	19, 623
AcuI	CTGAAG	1 cut(s)	707
AcyI	GRCGYC	1 cut(s)	608
AfiI	CCNNNNNNNGG	2 cut(s)	676, 795
AflIII	ACRYGT	1 cut(s)	574
AgsI	TTSAA	2 cut(s)	13, 53
AjiI	CACGTC	1 cut(s)	151
AjuI	GAANNNNNNNTTGG	2 cut(s)	782, 814
AleI	CACNNNNGTG	1 cut(s)	548
AluBI	AGCT	5 cut(s)	283, 416, 434, 556, 634
AluI	AGCT	5 cut(s)	283, 416, 434, 556, 634
Alw21I	GWGCWC	1 cut(s)	436
Alw26I	GTCTC	1 cut(s)	177
AlwI	GGATC	1 cut(s)	410
AlwNI	CAGNNNCTG	1 cut(s)	710
Ama87I	CYCGRG	1 cut(s)	417
AoxI	GGCC	3 cut(s)	166, 261, 351
ApeKI	GCWGC	1 cut(s)	413
ApoI	RAATTY	2 cut(s)	19, 623
AseI	ATTAAT	1 cut(s)	30
AspA2I	CCTAGG	1 cut(s)	370
AspS9I	GGNCC	2 cut(s)	166, 367
AsuHPI	GGTGA	3 cut(s)	64, 433, 613
AsuII	TTCGAA	1 cut(s)	512
AsuNHI	GCTAGC	1 cut(s)	461
AvaI	CYCGRG	1 cut(s)	417
AvaII	GGWCC	1 cut(s)	367
AvrII	CCTAGG	1 cut(s)	370
BanII	GRGCYC	1 cut(s)	436
BbsI	GAAGAC	2 cut(s)	385, 611
Bbv12I	GWGCWC	1 cut(s)	436
BbvI	GCAGC	1 cut(s)	425
BccI	CCATC	1 cut(s)	764
BceAI	ACGGC	5 cut(s)	142, 276, 474, 561, 577
BcgI	CGANNNNNNTGC	4 cut(s)	298, 332, 398, 432
BclI	TGATCA	1 cut(s)	69
BcoDI	GTCTC	1 cut(s)	177
BfaI	CTAG	4 cut(s)	284, 371, 462, 557
BfuAI	ACCTGC	1 cut(s)	355
BisI	GCNGC	1 cut(s)	414
BlnI	CCTAGG	1 cut(s)	370
BlsI	GCNGC	1 cut(s)	415
Bme18I	GGWCC	1 cut(s)	367
BmeT110I	CYCGRG	1 cut(s)	417
BmgBI	CACGTC	1 cut(s)	151
BmgT120I	GGNCC	2 cut(s)	166, 367
BmiI	GGNNCC	1 cut(s)	82
BmsI	GCATC	2 cut(s)	99, 318
BmtI	GCTAGC	1 cut(s)	465
BpiI	GAAGAC	2 cut(s)	385, 611
BpmI	CTGGAG	1 cut(s)	103
Bpu14I	TTCGAA	1 cut(s)	512
BpuEI	CTTGAG	1 cut(s)	778
BsaAI	YACGTR	2 cut(s)	44, 575
BsaHI	GRCGYC	1 cut(s)	608
BsaI	GGTCTC	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	2 cut(s)	676, 795
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	2 cut(s)	75, 84
BseDI	CCNNGG	1 cut(s)	370
BseGI	GGATG	2 cut(s)	210, 333
BseLI	CCNNNNNNNGG	2 cut(s)	676, 795
BseNI	ACTGG	2 cut(s)	75, 84
BseXI	GCAGC	1 cut(s)	425
BshFI	GGCC	3 cut(s)	168, 263, 353
BsiHKAI	GWGCWC	1 cut(s)	436
BsiHKCI	CYCGRG	1 cut(s)	417
BsiSI	CCGG	1 cut(s)	306
BslI	CCNNNNNNNGG	2 cut(s)	676, 795
BsmAI	GTCTC	1 cut(s)	177
BsnI	GGCC	3 cut(s)	168, 263, 353
Bso31I	GGTCTC	1 cut(s)	177
BsoBI	CYCGRG	1 cut(s)	417
Bsp119I	TTCGAA	1 cut(s)	512
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp143I	GATC	4 cut(s)	69, 141, 384, 402
BspACI	CCGC	3 cut(s)	486, 548, 680
BspANI	GGCC	3 cut(s)	168, 263, 353
BspLI	GGNNCC	1 cut(s)	82
BspMI	ACCTGC	1 cut(s)	355
BspOI	GCTAGC	1 cut(s)	465
BspPI	GGATC	1 cut(s)	410
BspT104I	TTCGAA	1 cut(s)	512
BspTNI	GGTCTC	1 cut(s)	177
BsrFI	RCCGGY	1 cut(s)	305
BsrI	ACTGG	2 cut(s)	75, 84
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	370
BssMI	GATC	4 cut(s)	69, 141, 384, 402
BssNI	GRCGYC	1 cut(s)	608
BssT1I	CCWWGG	1 cut(s)	370
Bst6I	CTCTTC	1 cut(s)	119
BstACI	GRCGYC	1 cut(s)	608
BstBAI	YACGTR	2 cut(s)	44, 575
BstBI	TTCGAA	1 cut(s)	512
BstC8I	GCNNGC	3 cut(s)	307, 411, 463
BstDEI	CTNAG	1 cut(s)	618
BstF5I	GGATG	2 cut(s)	210, 333
BstKTI	GATC	4 cut(s)	72, 144, 387, 405
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	4 cut(s)	69, 141, 384, 402
BstNSI	RCATGY	2 cut(s)	413, 500
BstSNI	TACGTA	1 cut(s)	44
BstV1I	GCAGC	1 cut(s)	425
BstV2I	GAAGAC	2 cut(s)	385, 611
BsuRI	GGCC	3 cut(s)	168, 263, 353
BtrI	CACGTC	1 cut(s)	151
BtsCI	GGATG	2 cut(s)	210, 333
BtsI	GCAGTG	2 cut(s)	72, 102
BtsIMutI	CAGTG	4 cut(s)	72, 82, 91, 102
BveI	ACCTGC	1 cut(s)	355
Cac8I	GCNNGC	3 cut(s)	307, 411, 463
CaiI	CAGNNNCTG	1 cut(s)	710
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	2 cut(s)	166, 367
CviAII	CATG	3 cut(s)	410, 497, 518
DdeI	CTNAG	1 cut(s)	618
DpnI	GATC	4 cut(s)	71, 143, 386, 404
DpnII	GATC	4 cut(s)	69, 141, 384, 402
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
Ecl136II	GAGCTC	1 cut(s)	434
Eco105I	TACGTA	1 cut(s)	44
Eco130I	CCWWGG	1 cut(s)	370
Eco24I	GRGCYC	1 cut(s)	436
Eco31I	GGTCTC	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	367
Eco53kI	GAGCTC	1 cut(s)	434
Eco57I	CTGAAG	1 cut(s)	707
Eco88I	CYCGRG	1 cut(s)	417
EcoICRI	GAGCTC	1 cut(s)	434
EcoO109I	RGGNCCY	1 cut(s)	367
EcoT14I	CCWWGG	1 cut(s)	370
EcoT22I	ATGCAT	1 cut(s)	502
EcoT38I	GRGCYC	1 cut(s)	436
ErhI	CCWWGG	1 cut(s)	370
FaeI	CATG	3 cut(s)	413, 500, 521
FaiI	YATR	9 cut(s)	276, 293, 411, 479, 498, 502, 519, 744, 756
FalI	AAGNNNNNCTT	2 cut(s)	611, 643
FatI	CATG	3 cut(s)	409, 496, 517
FbaI	TGATCA	1 cut(s)	69
Fnu4HI	GCNGC	1 cut(s)	414
FokI	GGATG	2 cut(s)	197, 320
FriOI	GRGCYC	1 cut(s)	436
Fsp4HI	GCNGC	1 cut(s)	414
FspBI	CTAG	4 cut(s)	284, 371, 462, 557
GluI	GCNGC	1 cut(s)	414
GsuI	CTGGAG	1 cut(s)	103
HaeIII	GGCC	3 cut(s)	168, 263, 353
HapII	CCGG	1 cut(s)	306
Hin1I	GRCGYC	1 cut(s)	608
Hin1II	CATG	3 cut(s)	413, 500, 521
HindIII	AAGCTT	1 cut(s)	632
HinfI	GANTC	4 cut(s)	98, 111, 648, 734
HpaII	CCGG	1 cut(s)	306
HphI	GGTGA	3 cut(s)	64, 433, 613
Hpy166II	GTNNAC	2 cut(s)	256, 661
Hpy188I	TCNGA	1 cut(s)	95
Hpy188III	TCNNGA	2 cut(s)	120, 535
Hpy8I	GTNNAC	2 cut(s)	256, 661
Hpy99I	CGWCG	1 cut(s)	613
HpyAV	CCTTC	3 cut(s)	217, 638, 682
HpyCH4IV	ACGT	4 cut(s)	43, 150, 574, 608
HpyCH4V	TGCA	3 cut(s)	154, 413, 500
HpyF3I	CTNAG	1 cut(s)	618
HpySE526I	ACGT	4 cut(s)	43, 150, 574, 608
Hsp92I	GRCGYC	1 cut(s)	608
Hsp92II	CATG	3 cut(s)	413, 500, 521
KroI	GCCGGC	1 cut(s)	305
KroNI	GCCGGC	1 cut(s)	307
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	4 cut(s)	69, 141, 384, 402
LmnI	GCTCC	3 cut(s)	80, 431, 553
LpnPI	CCDG	7 cut(s)	88, 97, 121, 133, 319, 350, 395
Lsp1109I	GCAGC	1 cut(s)	425
LweI	GCATC	2 cut(s)	99, 318
MaeI	CTAG	4 cut(s)	284, 371, 462, 557
MaeII	ACGT	4 cut(s)	43, 150, 574, 608
MaeIII	GTNAC	3 cut(s)	223, 319, 466
MalI	GATC	4 cut(s)	71, 143, 386, 404
MboI	GATC	4 cut(s)	69, 141, 384, 402
MboII	GAAGA	5 cut(s)	106, 385, 550, 616, 707
MhlI	GDGCHC	1 cut(s)	436
MluCI	AATT	5 cut(s)	14, 19, 580, 623, 757
MlyI	GAGTC	3 cut(s)	105, 657, 743
MmeI	TCCRAC	1 cut(s)	690
MnlI	CCTC	7 cut(s)	347, 481, 522, 680, 685, 700, 767
Mph1103I	ATGCAT	1 cut(s)	502
MroNI	GCCGGC	1 cut(s)	305
MseI	TTAA	7 cut(s)	17, 23, 30, 297, 630, 747, 820
MslI	CAYNNNNRTG	2 cut(s)	219, 548
MspI	CCGG	1 cut(s)	306
NaeI	GCCGGC	1 cut(s)	307
NdeII	GATC	4 cut(s)	69, 141, 384, 402
NgoMIV	GCCGGC	1 cut(s)	305
NheI	GCTAGC	1 cut(s)	461
NlaIII	CATG	3 cut(s)	413, 500, 521
NlaIV	GGNNCC	1 cut(s)	82
NmuCI	GTSAC	1 cut(s)	223
NsiI	ATGCAT	1 cut(s)	502
NspI	RCATGY	2 cut(s)	413, 500
NspV	TTCGAA	1 cut(s)	512
OliI	CACNNNNGTG	1 cut(s)	548
PaeI	GCATGC	1 cut(s)	413
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PdiI	GCCGGC	1 cut(s)	307
PfeI	GAWTC	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	415
PleI	GAGTC	3 cut(s)	105, 656, 742
PpsI	GAGTC	3 cut(s)	105, 656, 742
Ppu21I	YACGTR	2 cut(s)	44, 575
PpuMI	RGGWCCY	1 cut(s)	367
PshBI	ATTAAT	1 cut(s)	30
Psp124BI	GAGCTC	1 cut(s)	436
Psp5II	RGGWCCY	1 cut(s)	367
PspN4I	GGNNCC	1 cut(s)	82
PspPI	GGNCC	2 cut(s)	166, 367
PspPPI	RGGWCCY	1 cut(s)	367
PstNI	CAGNNNCTG	1 cut(s)	710
RseI	CAYNNNNRTG	2 cut(s)	219, 548
SacI	GAGCTC	1 cut(s)	436
SaqAI	TTAA	7 cut(s)	17, 23, 30, 297, 630, 747, 820
SatI	GCNGC	1 cut(s)	414
Sau3AI	GATC	4 cut(s)	69, 141, 384, 402
Sau96I	GGNCC	2 cut(s)	166, 367
SchI	GAGTC	3 cut(s)	105, 657, 743
SduI	GDGCHC	1 cut(s)	436
SfaNI	GCATC	2 cut(s)	99, 318
SfuI	TTCGAA	1 cut(s)	512
SinI	GGWCC	1 cut(s)	367
SmiMI	CAYNNNNRTG	2 cut(s)	219, 548
SmlI	CTYRAG	1 cut(s)	793
SmoI	CTYRAG	1 cut(s)	793
SnaBI	TACGTA	1 cut(s)	44
SphI	GCATGC	1 cut(s)	413
Sse9I	AATT	5 cut(s)	14, 19, 580, 623, 757
SsiI	CCGC	3 cut(s)	486, 548, 680
SspMI	CTAG	4 cut(s)	284, 371, 462, 557
SstI	GAGCTC	1 cut(s)	436
StyI	CCWWGG	1 cut(s)	370
TaiI	ACGT	4 cut(s)	46, 153, 577, 611
TaqI	TCGA	6 cut(s)	243, 339, 360, 436, 491, 512
TasI	AATT	5 cut(s)	14, 19, 580, 623, 757
TfiI	GAWTC	1 cut(s)	98
Tru1I	TTAA	7 cut(s)	17, 23, 30, 297, 630, 747, 820
Tru9I	TTAA	7 cut(s)	17, 23, 30, 297, 630, 747, 820
TscAI	CASTG	4 cut(s)	72, 82, 91, 109
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	1 cut(s)	413
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	4 cut(s)	199, 246, 392, 657
TspGWI	ACGGA	2 cut(s)	163, 582
TspRI	CASTG	4 cut(s)	72, 82, 91, 109
VpaK11BI	GGWCC	1 cut(s)	367
VspI	ATTAAT	1 cut(s)	30
XapI	RAATTY	2 cut(s)	19, 623
XceI	RCATGY	2 cut(s)	413, 500
XmaJI	CCTAGG	1 cut(s)	370
XspI	CTAG	4 cut(s)	284, 371, 462, 557
ZraI	GACGTC	1 cut(s)	609
Zsp2I	ATGCAT	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.