Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001933

Physical Location & Seq

Genomic Coordinates Forward (+)

11274532 .. 11276343

Gene Structure 1812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G138800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGACTATGGGAAATTTCTCATTACTCGCTGCTGCTGCAAGAAGGCTTGAAGGTAAAGTGGCACTAATCACTGGTGGGGCGAGCGGCATAGGAGAGTCCACTGCAAGACTCTTCTCAAAACATGGAGCTAAAGTTGTGATTGCAGATGTGCAAGATAACTTGGCTGAATCTATTTGTAGAGACCTAAGTTCTTCGTCTACTTCATTCGTCCATTGCGACGTAACAAAAGAAGAAGATGTCGAAAATGCTGTTAAAACAGCCACAAGCAAATATGGAAAGCTAGACATCATGTTCAACAATGCAGGCATAGCTGGTATAGCAAAAACCAACATCCTTGACAATGACAAGGCAGAATTTGAGCAAGTGATTGGGGTAAATTTGGTTGGTGTGTTTTTGGGGATCAAACATGCAGCTCGTGTTATGATCCCAGCTGGCCAAGGAAGCATAATTAACACTGCCAGTGCTTGTTCCACCATTGGGGGGTGCGCATCACATGCCTACACGAGTTCAAAGCATGGAGTACTAGGGCTGATGAGAAATACGGCCATAGAGCTTGGACAACACGGTATTCGGGTAAATTGTGTGTCGCCATATATAGTTGCCACACCGTTGGCGAAGGACTTCTTTAAGCTTGATGATGATGGAGTTCATGGTGTTTATTCCAACCTTAAAGGTGGGGTTCTTAAGGCAGAAGATATTGCTGAAGCTGCTCTTTACTTGGGAAGTGATGAGTCAAAGTATGTTAGTGGACATAATCTTTTGGTAGATGGAGGCTTCACTATTGTGAACGCAAGGTTTTGCATATTTGAACAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

273

Amino Acids

28.52

Weight (kDa)

6.06

Isoelectric Point (pI)

18.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23771 FvH4_3g25650 FvH4_3g25660
malus_domestica	MD11G1171900.v1.1 MD11G1172300.v1.1 MD12G1032600.v1.1
prunus_persica	Prupe.6G138400_v2.0.a1 Prupe.6G138600_v2.0.a1 Prupe.6G138700_v2.0.a1 Prupe.6G138800_v2.0.a1
pyrus_communis	pycom11g14280 pycom11g14340 pycom11g14350 pycom11g14410
rosa_chinensis	RchiOBHm_Chr5g0047121 RchiOBHm_Chr5g0047151
rosa_laevigata	RLG00000034467 RLG00000034469 RLG00000034471 RLG00000034472 RLG00000034473
rosa_multiflora	Rmu_co8232047.1_g000001 Rmu_co8263687.1_g000001 Rmu_sc0001565.1_g000029 Rmu_sc0003154.1_g000029 Rmu_sc0005145.1_g000014 Rmu_sc0019535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034260 Rroxscaffold_1G00034290 Rroxscaffold_1G00034310
rosa_rugosa	Rorug05G0234100 Rorug05G0234200 Rorug05G0234400 Rorug05G0234500 Rorug05G0234700
rosa_samantha	Rh5AG313100 Rh5AG313200 Rh5BG322100 Rh5CG348500 Rh5CG348600 Rh5CG348700 Rh5CG348900 Rh5CG349100 Rh5DG333100 Rh5DG333200
rosa_wichuraiana	Rw5G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	487
AccBSI	CCGCTC	1 cut(s)	84
AccI	GTMKAC	1 cut(s)	197
AciI	CCGC	1 cut(s)	84
AclWI	GGATC	2 cut(s)	407, 418
AcoI	YGGCCR	2 cut(s)	433, 543
AcsI	RAATTY	3 cut(s)	13, 353, 376
AcuI	CTGAAG	1 cut(s)	723
AfaI	GTAC	1 cut(s)	522
AfiI	CCNNNNNNNGG	2 cut(s)	477, 480
AflII	CTTAAG	1 cut(s)	683
AgsI	TTSAA	4 cut(s)	50, 295, 510, 809
AleI	CACNNNNGTG	1 cut(s)	782
AluBI	AGCT	9 cut(s)	128, 280, 311, 413, 431, 553, 631, 707, 815
AluI	AGCT	9 cut(s)	128, 280, 311, 413, 431, 553, 631, 707, 815
Alw26I	GTCTC	1 cut(s)	174
AlwI	GGATC	2 cut(s)	407, 418
AoxI	GGCC	2 cut(s)	433, 543
ApeKI	GCWGC	5 cut(s)	29, 32, 35, 410, 707
ApoI	RAATTY	3 cut(s)	13, 353, 376
Asp700I	GAANNNNTTC	1 cut(s)	620
AspLEI	GCGC	1 cut(s)	488
BalI	TGGCCA	1 cut(s)	435
BauI	CACGAG	2 cut(s)	414, 502
BbvI	GCAGC	5 cut(s)	16, 19, 22, 422, 694
BccI	CCATC	2 cut(s)	635, 761
BceAI	ACGGC	1 cut(s)	558
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	2 cut(s)	281, 524
BfrI	CTTAAG	1 cut(s)	683
BisI	GCNGC	6 cut(s)	30, 33, 36, 85, 411, 708
BlsI	GCNGC	6 cut(s)	31, 34, 37, 86, 412, 709
BmcAI	AGTACT	1 cut(s)	522
BmsI	GCATC	1 cut(s)	497
BsaI	GGTCTC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	436
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bsc4I	CCNNNNNNNGG	2 cut(s)	477, 480
Bse1I	ACTGG	2 cut(s)	76, 459
Bse3DI	GCAATG	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	436
BseGI	GGATG	1 cut(s)	330
BseLI	CCNNNNNNNGG	2 cut(s)	477, 480
BseMI	GCAATG	1 cut(s)	211
BseNI	ACTGG	2 cut(s)	76, 459
BseXI	GCAGC	5 cut(s)	16, 19, 22, 422, 694
BseYI	CCCAGC	1 cut(s)	427
BshFI	GGCC	2 cut(s)	435, 545
BslI	CCNNNNNNNGG	2 cut(s)	477, 480
BsmAI	GTCTC	1 cut(s)	174
BsnI	GGCC	2 cut(s)	435, 545
Bso31I	GGTCTC	1 cut(s)	174
Bsp143I	GATC	2 cut(s)	399, 423
BspACI	CCGC	1 cut(s)	84
BspANI	GGCC	2 cut(s)	435, 545
BspPI	GGATC	2 cut(s)	407, 418
BspTI	CTTAAG	1 cut(s)	683
BspTNI	GGTCTC	1 cut(s)	174
BsrBI	CCGCTC	1 cut(s)	84
BsrDI	GCAATG	1 cut(s)	211
BsrI	ACTGG	2 cut(s)	76, 459
BssECI	CCNNGG	1 cut(s)	436
BssMI	GATC	2 cut(s)	399, 423
BssSI	CACGAG	2 cut(s)	414, 502
BssT1I	CCWWGG	1 cut(s)	436
Bst2BI	CACGAG	2 cut(s)	414, 502
Bst4CI	ACNGT	2 cut(s)	566, 609
Bst6I	CTCTTC	1 cut(s)	116
BstAFI	CTTAAG	1 cut(s)	683
BstAPI	GCANNNNNTGC	1 cut(s)	494
BstC8I	GCNNGC	3 cut(s)	82, 304, 433
BstDEI	CTNAG	1 cut(s)	185
BstF5I	GGATG	1 cut(s)	330
BstHHI	GCGC	1 cut(s)	488
BstKTI	GATC	2 cut(s)	402, 426
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	2 cut(s)	399, 423
BstMWI	GCNNNNNNNGC	6 cut(s)	35, 308, 317, 441, 494, 707
BstNSI	RCATGY	2 cut(s)	410, 497
BstV1I	GCAGC	5 cut(s)	16, 19, 22, 422, 694
BstXI	CCANNNNNNTGG	1 cut(s)	610
BsuRI	GGCC	2 cut(s)	435, 545
BtsCI	GGATG	1 cut(s)	330
BtsI	GCAGTG	2 cut(s)	99, 453
BtsIMutI	CAGTG	4 cut(s)	69, 99, 453, 466
Cac8I	GCNNGC	3 cut(s)	82, 304, 433
CfoI	GCGC	1 cut(s)	488
Csp6I	GTAC	1 cut(s)	521
CviAII	CATG	6 cut(s)	122, 289, 407, 494, 515, 650
CviQI	GTAC	1 cut(s)	521
DdeI	CTNAG	1 cut(s)	185
DpnI	GATC	2 cut(s)	401, 425
DpnII	GATC	2 cut(s)	399, 423
EaeI	YGGCCR	2 cut(s)	433, 543
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	436
Eco31I	GGTCTC	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	723
EcoT14I	CCWWGG	1 cut(s)	436
ErhI	CCWWGG	1 cut(s)	436
FaeI	CATG	6 cut(s)	125, 292, 410, 497, 518, 653
FalI	AAGNNNNNCTT	4 cut(s)	608, 640, 696, 728
FatI	CATG	6 cut(s)	121, 288, 406, 493, 514, 649
FblI	GTMKAC	1 cut(s)	197
Fnu4HI	GCNGC	6 cut(s)	30, 33, 36, 85, 411, 708
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	6 cut(s)	30, 33, 36, 85, 411, 708
FspAI	RTGCGCAY	1 cut(s)	487
FspBI	CTAG	2 cut(s)	281, 524
FspI	TGCGCA	1 cut(s)	487
GlaI	GCGC	1 cut(s)	487
GluI	GCNGC	6 cut(s)	30, 33, 36, 85, 411, 708
GsaI	CCCAGC	1 cut(s)	431
HaeIII	GGCC	2 cut(s)	435, 545
HhaI	GCGC	1 cut(s)	488
Hin1II	CATG	6 cut(s)	125, 292, 410, 497, 518, 653
Hin6I	GCGC	1 cut(s)	486
HinP1I	GCGC	1 cut(s)	486
HindIII	AAGCTT	2 cut(s)	629, 813
HinfI	GANTC	4 cut(s)	95, 108, 167, 731
Hpy166II	GTNNAC	4 cut(s)	99, 198, 749, 787
Hpy8I	GTNNAC	4 cut(s)	99, 198, 749, 787
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	3 cut(s)	36, 44, 610
HpyCH4III	ACNGT	2 cut(s)	566, 609
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	7 cut(s)	38, 104, 143, 151, 302, 410, 801
HpyF10VI	GCNNNNNNNGC	6 cut(s)	35, 308, 317, 441, 494, 707
HpyF3I	CTNAG	1 cut(s)	185
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	6 cut(s)	125, 292, 410, 497, 518, 653
HspAI	GCGC	1 cut(s)	486
Kzo9I	GATC	2 cut(s)	399, 423
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	6 cut(s)	57, 288, 297, 417, 441, 472
Lsp1109I	GCAGC	5 cut(s)	16, 19, 22, 422, 694
LweI	GCATC	1 cut(s)	497
MaeI	CTAG	2 cut(s)	281, 524
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	2 cut(s)	401, 425
MbiI	CCGCTC	1 cut(s)	84
MboI	GATC	2 cut(s)	399, 423
MboII	GAAGA	5 cut(s)	103, 183, 242, 245, 704
MlsI	TGGCCA	1 cut(s)	435
MluCI	AATT	5 cut(s)	13, 353, 376, 447, 577
MluNI	TGGCCA	1 cut(s)	435
MlyI	GAGTC	3 cut(s)	102, 104, 740
MmeI	TCCRAC	1 cut(s)	687
MnlI	CCTC	1 cut(s)	764
Mox20I	TGGCCA	1 cut(s)	435
MroXI	GAANNNNTTC	1 cut(s)	620
MscI	TGGCCA	1 cut(s)	435
MseI	TTAA	5 cut(s)	252, 450, 627, 669, 684
MslI	CAYNNNNRTG	1 cut(s)	782
Msp20I	TGGCCA	1 cut(s)	435
MspA1I	CMGCKG	1 cut(s)	431
MspCI	CTTAAG	1 cut(s)	683
MwoI	GCNNNNNNNGC	6 cut(s)	35, 308, 317, 441, 494, 707
NdeII	GATC	2 cut(s)	399, 423
NlaIII	CATG	6 cut(s)	125, 292, 410, 497, 518, 653
NsbI	TGCGCA	1 cut(s)	487
NspI	RCATGY	2 cut(s)	410, 497
OliI	CACNNNNGTG	1 cut(s)	782
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	620
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	6 cut(s)	31, 34, 37, 86, 412, 709
PleI	GAGTC	3 cut(s)	102, 103, 739
PpsI	GAGTC	3 cut(s)	102, 103, 739
PspFI	CCCAGC	1 cut(s)	427
PvuII	CAGCTG	1 cut(s)	431
RsaI	GTAC	1 cut(s)	522
RsaNI	GTAC	1 cut(s)	521
RseI	CAYNNNNRTG	1 cut(s)	782
SaqAI	TTAA	5 cut(s)	252, 450, 627, 669, 684
SatI	GCNGC	6 cut(s)	30, 33, 36, 85, 411, 708
Sau3AI	GATC	2 cut(s)	399, 423
ScaI	AGTACT	1 cut(s)	522
SchI	GAGTC	3 cut(s)	102, 104, 740
SfaNI	GCATC	1 cut(s)	497
SmiMI	CAYNNNNRTG	1 cut(s)	782
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
Sse9I	AATT	5 cut(s)	13, 353, 376, 447, 577
SsiI	CCGC	1 cut(s)	84
SspMI	CTAG	2 cut(s)	281, 524
StyI	CCWWGG	1 cut(s)	436
TaaI	ACNGT	2 cut(s)	566, 609
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	1 cut(s)	240
TasI	AATT	5 cut(s)	13, 353, 376, 447, 577
TatI	WGTACW	1 cut(s)	520
TauI	GCSGC	1 cut(s)	87
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	5 cut(s)	252, 450, 627, 669, 684
Tru9I	TTAA	5 cut(s)	252, 450, 627, 669, 684
TscAI	CASTG	4 cut(s)	76, 106, 460, 466
TseI	GCWGC	5 cut(s)	29, 32, 35, 410, 707
TspDTI	ATGAA	2 cut(s)	192, 638
TspRI	CASTG	4 cut(s)	76, 106, 460, 466
Vha464I	CTTAAG	1 cut(s)	683
XapI	RAATTY	3 cut(s)	13, 353, 376
XceI	RCATGY	2 cut(s)	410, 497
XmiI	GTMKAC	1 cut(s)	197
XmnI	GAANNNNTTC	1 cut(s)	620
XspI	CTAG	2 cut(s)	281, 524
ZrmI	AGTACT	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.