Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001933

Physical Location & Seq

Genomic Coordinates Forward (+)

40179247 .. 40179690

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG348700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGGAGCTCGAAAAGGGACTATTATCAACACGGCTAGCGTTTGCTCGATCATAGGGGGTGGCACGTCTCATGCATACACGAGTTTGAAGCTTGGAGTCGAGGGGCTCACGAAGAACATGGCAGTGGAGCTCGGACAGTACAGAATATGTGTGAATTCTGTGTCGCCGTATTTGGTGGAGACGTCGTTGACCAAGGACTACTTTAAGCCTGACGATGAGGGCGTCGGTGATGTTTACTCTAACCTCAAAGGGGCGGTGCTGAAGGCGGAAGATGTGACGGAGGCTGTTATTTACTTGGAAAGTGATGAGTCCAAGTATGTTAGTGGGCATAATTTGATAGTAGATGGAGTCTACTCTATTGTCACCCAAGGTTCTGTATGTTTGAGCAATCTTAGTTCAGCAGGAATGTTCCTAGTCCAAGTTCATGGGACAATTGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

147

Amino Acids

15.59

Weight (kDa)

4.85

Isoelectric Point (pI)

11.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short_C2	PF13561	3 - 116	1.6e-23	Enoyl-(Acyl carrier protein) reductase
adh_short	PF00106	3 - 69	1.9e-13	short chain dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23771 FvH4_3g25650 FvH4_3g25660
malus_domestica	MD11G1171900.v1.1 MD11G1172300.v1.1 MD12G1032600.v1.1
prunus_persica	Prupe.6G138400_v2.0.a1 Prupe.6G138600_v2.0.a1 Prupe.6G138700_v2.0.a1 Prupe.6G138800_v2.0.a1
pyrus_communis	pycom11g14280 pycom11g14340 pycom11g14350 pycom11g14410
rosa_chinensis	RchiOBHm_Chr5g0047121 RchiOBHm_Chr5g0047151
rosa_laevigata	RLG00000034467 RLG00000034469 RLG00000034471 RLG00000034472 RLG00000034473
rosa_multiflora	Rmu_co8232047.1_g000001 Rmu_co8263687.1_g000001 Rmu_sc0001565.1_g000029 Rmu_sc0003154.1_g000029 Rmu_sc0005145.1_g000014 Rmu_sc0019535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034260 Rroxscaffold_1G00034290 Rroxscaffold_1G00034310
rosa_rugosa	Rorug05G0234100 Rorug05G0234200 Rorug05G0234400 Rorug05G0234500 Rorug05G0234700
rosa_samantha	Rh5AG313100 Rh5AG313200 Rh5BG322100 Rh5CG348500 Rh5CG348600 Rh5CG348700 Rh5CG348900 Rh5CG349100 Rh5DG333100 Rh5DG333200
rosa_wichuraiana	Rw5G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	185
AccI	GTMKAC	1 cut(s)	351
AciI	CCGC	2 cut(s)	254, 266
AcsI	RAATTY	1 cut(s)	154
AcuI	CTGAAG	1 cut(s)	281
AcyI	GRCGYC	2 cut(s)	182, 222
AfaI	GTAC	1 cut(s)	140
AfiI	CCNNNNNNNGG	1 cut(s)	250
AgsI	TTSAA	2 cut(s)	88, 437
AjiI	CACGTC	1 cut(s)	66
AluBI	AGCT	3 cut(s)	8, 91, 130
AluI	AGCT	3 cut(s)	8, 91, 130
Alw21I	GWGCWC	2 cut(s)	10, 132
Alw26I	GTCTC	2 cut(s)	72, 173
ApoI	RAATTY	1 cut(s)	154
AsuHPI	GGTGA	2 cut(s)	239, 355
AsuNHI	GCTAGC	1 cut(s)	35
BanII	GRGCYC	3 cut(s)	10, 108, 132
BauI	CACGAG	1 cut(s)	79
Bbv12I	GWGCWC	2 cut(s)	10, 132
BccI	CCATC	1 cut(s)	338
BceAI	ACGGC	2 cut(s)	48, 151
BcoDI	GTCTC	2 cut(s)	72, 173
BfaI	CTAG	2 cut(s)	36, 413
BmgBI	CACGTC	1 cut(s)	66
BmtI	GCTAGC	1 cut(s)	39
BsaHI	GRCGYC	2 cut(s)	182, 222
BsaJI	CCNNGG	2 cut(s)	192, 367
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
BseDI	CCNNGG	2 cut(s)	192, 367
BseLI	CCNNNNNNNGG	1 cut(s)	250
BsiHKAI	GWGCWC	2 cut(s)	10, 132
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmAI	GTCTC	2 cut(s)	72, 173
BsmBI	CGTCTC	2 cut(s)	72, 173
BsmFI	GGGAC	1 cut(s)	31
Bsp1286I	GDGCHC	3 cut(s)	10, 108, 132
Bsp143I	GATC	1 cut(s)	48
BspACI	CCGC	2 cut(s)	254, 266
BspOI	GCTAGC	1 cut(s)	39
BssECI	CCNNGG	2 cut(s)	192, 367
BssMI	GATC	1 cut(s)	48
BssNI	GRCGYC	2 cut(s)	182, 222
BssSI	CACGAG	1 cut(s)	79
BssT1I	CCWWGG	2 cut(s)	192, 367
Bst2BI	CACGAG	1 cut(s)	79
Bst4CI	ACNGT	1 cut(s)	138
BstACI	GRCGYC	2 cut(s)	182, 222
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	1 cut(s)	392
BstKTI	GATC	1 cut(s)	51
BstMAI	GTCTC	2 cut(s)	72, 173
BstMBI	GATC	1 cut(s)	48
BstXI	CCANNNNNNTGG	1 cut(s)	425
BtrI	CACGTC	1 cut(s)	66
BtsI	GCAGTG	1 cut(s)	129
BtsIMutI	CAGTG	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	37
CseI	GACGC	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	139
CviAII	CATG	3 cut(s)	71, 118, 425
CviJI	RGCY	7 cut(s)	8, 35, 91, 106, 130, 208, 284
CviKI_1	RGCY	7 cut(s)	8, 35, 91, 106, 130, 208, 284
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	1 cut(s)	392
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
EciI	GGCGGA	1 cut(s)	281
Ecl136II	GAGCTC	2 cut(s)	8, 130
Eco130I	CCWWGG	2 cut(s)	192, 367
Eco24I	GRGCYC	3 cut(s)	10, 108, 132
Eco53kI	GAGCTC	2 cut(s)	8, 130
Eco57I	CTGAAG	1 cut(s)	281
EcoICRI	GAGCTC	2 cut(s)	8, 130
EcoRI	GAATTC	1 cut(s)	154
EcoT14I	CCWWGG	2 cut(s)	192, 367
EcoT22I	ATGCAT	1 cut(s)	76
EcoT38I	GRGCYC	3 cut(s)	10, 108, 132
ErhI	CCWWGG	2 cut(s)	192, 367
Esp3I	CGTCTC	2 cut(s)	72, 173
FaeI	CATG	3 cut(s)	74, 121, 428
FaiI	YATR	9 cut(s)	53, 72, 76, 119, 148, 318, 330, 379, 426
FalI	AAGNNNNNCTT	2 cut(s)	185, 217
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	3 cut(s)	70, 117, 424
FblI	GTMKAC	1 cut(s)	351
FriOI	GRGCYC	3 cut(s)	10, 108, 132
FspBI	CTAG	2 cut(s)	36, 413
HgaI	GACGC	1 cut(s)	211
Hin1I	GRCGYC	2 cut(s)	182, 222
Hin1II	CATG	3 cut(s)	74, 121, 428
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	3 cut(s)	96, 308, 348
HphI	GGTGA	2 cut(s)	239, 355
Hpy166II	GTNNAC	3 cut(s)	189, 235, 352
Hpy188I	TCNGA	1 cut(s)	134
Hpy188III	TCNNGA	1 cut(s)	109
Hpy8I	GTNNAC	3 cut(s)	189, 235, 352
Hpy99I	CGWCG	2 cut(s)	187, 227
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	1 cut(s)	138
HpyCH4IV	ACGT	2 cut(s)	65, 182
HpyCH4V	TGCA	1 cut(s)	74
HpyF3I	CTNAG	1 cut(s)	392
HpySE526I	ACGT	2 cut(s)	65, 182
Hsp92I	GRCGYC	2 cut(s)	182, 222
Hsp92II	CATG	3 cut(s)	74, 121, 428
Kzo9I	GATC	1 cut(s)	48
LmnI	GCTCC	2 cut(s)	5, 127
LpnPI	CCDG	2 cut(s)	222, 387
MaeI	CTAG	2 cut(s)	36, 413
MaeII	ACGT	2 cut(s)	65, 182
MaeIII	GTNAC	2 cut(s)	274, 361
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	2 cut(s)	124, 281
MfeI	CAATTG	1 cut(s)	432
MhlI	GDGCHC	3 cut(s)	10, 108, 132
MluCI	AATT	3 cut(s)	154, 331, 432
MlyI	GAGTC	3 cut(s)	105, 317, 357
MnlI	CCTC	4 cut(s)	94, 211, 254, 274
Mph1103I	ATGCAT	1 cut(s)	76
MseI	TTAA	1 cut(s)	204
MslI	CAYNNNNRTG	1 cut(s)	122
MunI	CAATTG	1 cut(s)	432
NdeII	GATC	1 cut(s)	48
NheI	GCTAGC	1 cut(s)	35
NlaIII	CATG	3 cut(s)	74, 121, 428
NmuCI	GTSAC	2 cut(s)	274, 361
NsiI	ATGCAT	1 cut(s)	76
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PleI	GAGTC	3 cut(s)	104, 316, 356
PpsI	GAGTC	3 cut(s)	104, 316, 356
Psp124BI	GAGCTC	2 cut(s)	10, 132
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
RseI	CAYNNNNRTG	1 cut(s)	122
SacI	GAGCTC	2 cut(s)	10, 132
SaqAI	TTAA	1 cut(s)	204
Sau3AI	GATC	1 cut(s)	48
SchI	GAGTC	3 cut(s)	105, 317, 357
SduI	GDGCHC	3 cut(s)	10, 108, 132
SetI	ASST	7 cut(s)	10, 68, 93, 132, 185, 246, 373
SmiMI	CAYNNNNRTG	1 cut(s)	122
Sse9I	AATT	3 cut(s)	154, 331, 432
SsiI	CCGC	2 cut(s)	254, 266
SspMI	CTAG	2 cut(s)	36, 413
SstI	GAGCTC	2 cut(s)	10, 132
StyI	CCWWGG	2 cut(s)	192, 367
TaaI	ACNGT	1 cut(s)	138
TaiI	ACGT	2 cut(s)	68, 185
TaqI	TCGA	3 cut(s)	10, 47, 99
TasI	AATT	3 cut(s)	154, 331, 432
TatI	WGTACW	1 cut(s)	138
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	1 cut(s)	129
TseFI	GTSAC	2 cut(s)	274, 361
Tsp45I	GTSAC	2 cut(s)	274, 361
TspDTI	ATGAA	1 cut(s)	413
TspGWI	ACGGA	1 cut(s)	293
TspRI	CASTG	1 cut(s)	129
XapI	RAATTY	1 cut(s)	154
XmiI	GTMKAC	1 cut(s)	351
XspI	CTAG	2 cut(s)	36, 413
ZraI	GACGTC	1 cut(s)	183
Zsp2I	ATGCAT	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.