FvH4_3g30140

Transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000597
Physical Location & Seq
Reverse (-)
23357367 .. 23363423
6057 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g30140.t1

Sequence Viewer

Length: 1419 bp
ATGGGGACGCTGGCACCAAACTCCATAGCAGCAGAAGCACACGATCGGAATCATCAAGATCAAGTAGTAGATGGTAATCATGCCAAGGTTGTTGGCGATCATGATGCTGATGATGACAAACTGGATGCTGGTGCTAAGTTTGTTCTTAAATCCAAAGGATCGTGGGTGCACTGTGGTTATCATTTGACGACATCAATAGTTGCTCCACCACTGCTAAGTCTGCCATACGCTTTCACATTTCTGGGATGGACGGGCGGAATTGTTTGTTTGGTCATCGGAGCATTAGTGACTTTCTATTCATACAACTTGATCTCTCTGGTGCTCGAGCACTACGCTCAGTTGGGACATCGCCATCTTCGGTTCCGAGACATGGCTCGTGACATTCTTGGTCCCAAATGGGGTCGCTATTTTGTTGGTCCAATTCAGTTCCTGGTATGCTATGGTGCTGTTGTGGCTTGCACTCTTTTGGGAGGGCAATGCATGAAGGCAGTTTATATGCTGACAAACCCAAATGGGAGCATGAAACTTTACGAGTTTGTGATCATATTTGGATGCTTCATGCTGATCTTGGCCCAAATCCCATCATTTCACTCACTCAGGCACATCAACCTGGTCTCCATGATCCTTTGCCTGGCCTATAGTGTTTGTGCTACTGCTGCTTGCATCCATATTGGAAGCTCTTCAAAAGGGCCAGCAAAGGACTATTCCTTGAAGGGCAACAGTCAGAATCAGATTTTTGGGATCTTTAATGCCAATGCCATCATTGCTACGACATACGGCAATGGTATCATTCCAGAAATTCAGGCAACAATCGCACCACCAGTGAAGGGAAAGATGTTCAAGGGATTGTGTGTTTGTTACACAATAGTCACAATGACTTTCTTCAGCGTTGCGATATCTGGCTATTGGGCATTTGGTAACCAATCTGAAGGTCTCATCCTTAGCAACTTCTTGTCCGATGGTAACCCTTTGGTGCCAAAGTGGTTCATTTTCATGACCAACATTTTCACCATACTCCAACTTTCAGCTGTTGGTGTGGTTTATCTGCAGCCCACAAATGAAGTACTAGAGAGAGCATTTGCAGACCCAACAAGCAAAGAGTTTTCAGCTCGAAATGTGATCCCGAGGATGATCTCTCGGTCACTGTCTGTCATCACGGCAACAACCATAGCAGCAATGCTTCCCTTTTTTGGGGACATCAATGCAGTTATTGGAGCTTTTGGTTTCATGCCCCTCGACTTCATCTTGCCTGTAGTCTTCTTCAACTTGACCTTTAAACCATCAAAACGAAGCTTTATTTTCTGGTTGAACACCACTATTGCCGTGGTGTTCTCAATCATGGGGGTTTTAGCAGCAATTGCAGCTGTAAGACAAATTAGCCTGGATGCCAATAGTTACAAGTTATTTGCCAATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

473

Amino Acids

51.56

Weight (kDa)

8.77

Isoelectric Point (pI)

29.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 52 - 458 2e-64 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08230 AT1G08230 AT1G08230 AT1G08230 AT1G08230
fragaria_vesca FvH4_3g30140 FvH4_7g06340 FvH4_7g06350 FvH4_7g06350
malus_domestica MD02G1244800.v1.1 MD03G1133300.v1.1 MD07G1072100.v1.1 MD07G1072300.v1.1 MD11G1155800.v1.1 MD11G1156000.v1.1
prunus_persica Prupe.2G090300_v2.0.a1 Prupe.2G090500_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1
pyrus_communis pycom02g21070 pycom03g08970 pycom07g05520
rosa_chinensis RchiOBHm_Chr1g0334311 RchiOBHm_Chr1g0334341 RchiOBHm_Chr1g0334351 RchiOBHm_Chr1g0334371 RchiOBHm_Chr1g0334381 RchiOBHm_Chr1g0334431 RchiOBHm_Chr5g0055491 RchiOBHm_Chr5g0055511
rosa_laevigata RLG00000029454 RLG00000029457 RLG00000029458 RLG00000029459 RLG00000029461 RLG00000034991 RLG00000034993
rosa_multiflora Rmu_sc0001673.1_g000036 Rmu_sc0001673.1_g000040 Rmu_sc0016880.1_g000002 Rmu_ssc0000047.1_g000014 Rmu_ssc0000047.1_g000015 Rmu_ssc0000047.1_g000016 Rmu_ssc0000047.1_g000023
rosa_roxburghii Rroxscaffold_1G00024820 Rroxscaffold_1G00024850 Rroxscaffold_1G00024860 Rroxscaffold_4G00316880 Rroxscaffold_4G00316900
rosa_rugosa Rorug01G0113300.1 Rorug01G0113400 Rorug01G0113500 Rorug05G0293200 Rorug05G0293200 Rorug05G0293400.1
rosa_samantha Rh1AG138200 Rh1AG138300 Rh1AG139000 Rh1BG104900 Rh1CG130400 Rh1CG130500 Rh1CG131000 Rh1DG142700 Rh1DG142800 Rh5AG362800 Rh5AG363000 Rh5BG375000 Rh5BG375200 Rh5CG396900 Rh5CG397100 Rh5DG388300 Rh5DG388400
rosa_wichuraiana Rw0G003720 Rw0G003730 Rw0G003740 Rw1G011440 Rw1G011450 Rw5G034150 Rw5G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 13, 973
AciI CCGC 1 cut(s) 255
AclWI GGATC 4 cut(s) 166, 616, 749, 1114
AcsI RAATTY 1 cut(s) 798
AcuI CTGAAG 2 cut(s) 868, 948
AfaI GTAC 1 cut(s) 1065
AfiI CCNNNNNNNGG 6 cut(s) 370, 398, 631, 827, 1190, 1191
AgsI TTSAA 5 cut(s) 684, 712, 841, 1264, 1309
AjnI CCWGG 4 cut(s) 429, 609, 630, 1380
AluBI AGCT 6 cut(s) 678, 1028, 1109, 1217, 1293, 1364
AluI AGCT 6 cut(s) 678, 1028, 1109, 1217, 1293, 1364
Alw21I GWGCWC 3 cut(s) 171, 324, 330
Alw26I GTCTC 3 cut(s) 360, 619, 938
Alw44I GTGCAC 1 cut(s) 167
AlwI GGATC 4 cut(s) 166, 616, 749, 1114
AlwNI CAGNNNCTG 1 cut(s) 430
Ama87I CYCGRG 2 cut(s) 323, 1123
AoxI GGCC 3 cut(s) 570, 633, 689
ApaLI GTGCAC 1 cut(s) 167
ApeKI GCWGC 6 cut(s) 29, 656, 1048, 1172, 1352, 1361
ApoI RAATTY 1 cut(s) 798
Asp700I GAANNNNTTC 1 cut(s) 679
AspS9I GGNCC 4 cut(s) 389, 416, 571, 689
AsuHPI GGTGA 1 cut(s) 1000
AvaI CYCGRG 2 cut(s) 323, 1123
AvaII GGWCC 2 cut(s) 389, 416
BaeGI GKGCMC 1 cut(s) 171
BanI GGYRCC 2 cut(s) 13, 973
BauI CACGAG 1 cut(s) 375
BbsI GAAGAC 1 cut(s) 1249
Bbv12I GWGCWC 3 cut(s) 171, 324, 330
BbvI GCAGC 6 cut(s) 41, 643, 1060, 1184, 1364, 1373
BccI CCATC 7 cut(s) 65, 240, 360, 589, 767, 953, 1288
BceAI ACGGC 3 cut(s) 793, 1173, 1307
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BciT130I CCWGG 4 cut(s) 431, 611, 632, 1382
BclI TGATCA 1 cut(s) 540
BcoDI GTCTC 3 cut(s) 360, 619, 938
BfaI CTAG 1 cut(s) 1067
BfmI CTRYAG 3 cut(s) 637, 1046, 1251
BisI GCNGC 6 cut(s) 30, 657, 1049, 1173, 1353, 1362
BlsI GCNGC 6 cut(s) 31, 658, 1050, 1174, 1354, 1363
BmcAI AGTACT 1 cut(s) 1065
Bme1390I CCNGG 4 cut(s) 431, 611, 632, 1382
Bme18I GGWCC 2 cut(s) 389, 416
BmeT110I CYCGRG 2 cut(s) 323, 1123
BmgT120I GGNCC 4 cut(s) 389, 416, 571, 689
BmiI GGNNCC 4 cut(s) 15, 362, 391, 975
BmrFI CCNGG 4 cut(s) 431, 611, 632, 1382
BmsI GCATC 5 cut(s) 94, 115, 542, 672, 1375
BpiI GAAGAC 1 cut(s) 1249
Bpu10I CCTNAGC 1 cut(s) 941
BsaBI GATNNNNATC 2 cut(s) 48, 75
BsaI GGTCTC 2 cut(s) 619, 938
BsaJI CCNNGG 3 cut(s) 84, 1124, 1323
BsaXI ACNNNNNCTCC 4 cut(s) 270, 300, 599, 629
Bsc4I CCNNNNNNNGG 6 cut(s) 370, 398, 631, 827, 1190, 1191
Bse1I ACTGG 2 cut(s) 126, 821
Bse3DI GCAATG 4 cut(s) 482, 762, 787, 1182
Bse8I GATNNNNATC 2 cut(s) 48, 75
BseBI CCWGG 4 cut(s) 431, 611, 632, 1382
BseDI CCNNGG 3 cut(s) 84, 1124, 1323
BseGI GGATG 7 cut(s) 130, 251, 557, 663, 936, 1134, 1390
BseJI GATNNNNATC 2 cut(s) 48, 75
BseLI CCNNNNNNNGG 6 cut(s) 370, 398, 631, 827, 1190, 1191
BseMI GCAATG 4 cut(s) 482, 762, 787, 1182
BseMII CTCAG 2 cut(s) 350, 610
BseNI ACTGG 2 cut(s) 126, 821
BseSI GKGCMC 1 cut(s) 171
BseXI GCAGC 6 cut(s) 41, 643, 1060, 1184, 1364, 1373
Bsh1285I CGRYCG 1 cut(s) 46
BshFI GGCC 3 cut(s) 572, 635, 691
BshNI GGYRCC 2 cut(s) 13, 973
BsiEI CGRYCG 1 cut(s) 46
BsiHKAI GWGCWC 3 cut(s) 171, 324, 330
BsiHKCI CYCGRG 2 cut(s) 323, 1123
BslFI GGGAC 4 cut(s) 19, 357, 375, 1208
BslI CCNNNNNNNGG 6 cut(s) 370, 398, 631, 827, 1190, 1191
BsmAI GTCTC 3 cut(s) 360, 619, 938
BsmFI GGGAC 4 cut(s) 19, 357, 375, 1208
BsnI GGCC 3 cut(s) 572, 635, 691
Bso31I GGTCTC 2 cut(s) 619, 938
BsoBI CYCGRG 2 cut(s) 323, 1123
Bsp1286I GDGCHC 3 cut(s) 171, 324, 330
BspACI CCGC 1 cut(s) 255
BspANI GGCC 3 cut(s) 572, 635, 691
BspCNI CTCAG 2 cut(s) 349, 609
BspHI TCATGA 2 cut(s) 100, 993
BspLI GGNNCC 4 cut(s) 15, 362, 391, 975
BspMAI CTGCAG 1 cut(s) 1050
BspPI GGATC 4 cut(s) 166, 616, 749, 1114
BspQI GCTCTTC 1 cut(s) 685
BspT107I GGYRCC 2 cut(s) 13, 973
BspTNI GGTCTC 2 cut(s) 619, 938
BsrDI GCAATG 4 cut(s) 482, 762, 787, 1182
BsrI ACTGG 2 cut(s) 126, 821
BssECI CCNNGG 3 cut(s) 84, 1124, 1323
BssSI CACGAG 1 cut(s) 375
BssT1I CCWWGG 1 cut(s) 84
Bst2BI CACGAG 1 cut(s) 375
Bst2UI CCWGG 4 cut(s) 431, 611, 632, 1382
Bst4CI ACNGT 3 cut(s) 173, 722, 1146
Bst6I CTCTTC 1 cut(s) 685
BstAPI GCANNNNNTGC 1 cut(s) 1358
BstC8I GCNNGC 4 cut(s) 12, 457, 661, 693
BstDEI CTNAG 5 cut(s) 135, 215, 336, 596, 941
BstDSI CCRYGG 1 cut(s) 1323
BstEII GGTNACC 2 cut(s) 917, 962
BstF5I GGATG 7 cut(s) 130, 251, 557, 663, 936, 1134, 1390
BstMAI GTCTC 3 cut(s) 360, 619, 938
BstMCI CGRYCG 1 cut(s) 46
BstMWI GCNNNNNNNGC 8 cut(s) 35, 220, 452, 656, 764, 812, 1358, 1361
BstNI CCWGG 4 cut(s) 431, 611, 632, 1382
BstPI GGTNACC 2 cut(s) 917, 962
BstSCI CCNGG 4 cut(s) 429, 609, 630, 1380
BstSFI CTRYAG 3 cut(s) 637, 1046, 1251
BstSLI GKGCMC 1 cut(s) 171
BstV1I GCAGC 6 cut(s) 41, 643, 1060, 1184, 1364, 1373
BstV2I GAAGAC 1 cut(s) 1249
BstX2I RGATCY 1 cut(s) 741
BstYI RGATCY 1 cut(s) 741
BsuRI GGCC 3 cut(s) 572, 635, 691
BtgI CCRYGG 1 cut(s) 1323
BtgZI GCGATG 1 cut(s) 332
BtsCI GGATG 7 cut(s) 130, 251, 557, 663, 936, 1134, 1390
BtsI GCAGTG 1 cut(s) 209
BtsIMutI CAGTG 4 cut(s) 169, 209, 828, 1142
Cac8I GCNNGC 4 cut(s) 12, 457, 661, 693
CaiI CAGNNNCTG 1 cut(s) 430
CciI TCATGA 2 cut(s) 100, 993
Cfr13I GGNCC 4 cut(s) 389, 416, 571, 689
CseI GACGC 1 cut(s) 16
CsiI ACCWGGT 1 cut(s) 609
Csp6I GTAC 1 cut(s) 1064
CviQI GTAC 1 cut(s) 1064
DdeI CTNAG 5 cut(s) 135, 215, 336, 596, 941
DraI TTTAAA 1 cut(s) 1276
Eam1104I CTCTTC 1 cut(s) 685
EarI CTCTTC 1 cut(s) 685
EciI GGCGGA 1 cut(s) 270
Eco130I CCWWGG 1 cut(s) 84
Eco31I GGTCTC 2 cut(s) 619, 938
Eco32I GATATC 1 cut(s) 897
Eco47I GGWCC 2 cut(s) 389, 416
Eco57I CTGAAG 2 cut(s) 868, 948
Eco88I CYCGRG 2 cut(s) 323, 1123
Eco91I GGTNACC 2 cut(s) 917, 962
EcoO65I GGTNACC 2 cut(s) 917, 962
EcoRII CCWGG 4 cut(s) 429, 609, 630, 1380
EcoRV GATATC 1 cut(s) 897
EcoT14I CCWWGG 1 cut(s) 84
EcoT22I ATGCAT 1 cut(s) 482
ErhI CCWWGG 1 cut(s) 84
FaqI GGGAC 4 cut(s) 19, 357, 375, 1208
FbaI TGATCA 1 cut(s) 540
Fnu4HI GCNGC 6 cut(s) 30, 657, 1049, 1173, 1353, 1362
FokI GGATG 7 cut(s) 137, 258, 564, 650, 923, 1141, 1397
Fsp4HI GCNGC 6 cut(s) 30, 657, 1049, 1173, 1353, 1362
FspBI CTAG 1 cut(s) 1067
GluI GCNGC 6 cut(s) 30, 657, 1049, 1173, 1353, 1362
HaeIII GGCC 3 cut(s) 572, 635, 691
HgaI GACGC 1 cut(s) 16
HindIII AAGCTT 1 cut(s) 1291
HinfI GANTC 2 cut(s) 49, 727
HphI GGTGA 1 cut(s) 1000
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 7 cut(s) 48, 278, 365, 726, 732, 928, 958
Hpy188III TCNNGA 6 cut(s) 56, 101, 377, 794, 994, 1123
Hpy8I GTNNAC 1 cut(s) 169
HpyAV CCTTC 4 cut(s) 478, 706, 820, 923
HpyCH4III ACNGT 3 cut(s) 173, 722, 1146
HpyCH4V TGCA 8 cut(s) 169, 459, 480, 663, 1048, 1082, 1205, 1361
HpyF10VI GCNNNNNNNGC 8 cut(s) 35, 220, 452, 656, 764, 812, 1358, 1361
HpyF3I CTNAG 5 cut(s) 135, 215, 336, 596, 941
Ksp22I TGATCA 1 cut(s) 540
LguI GCTCTTC 1 cut(s) 685
LmnI GCTCC 4 cut(s) 208, 278, 516, 1214
Lsp1109I GCAGC 6 cut(s) 41, 643, 1060, 1184, 1364, 1373
LweI GCATC 5 cut(s) 94, 115, 542, 672, 1375
MabI ACCWGGT 1 cut(s) 609
MaeI CTAG 1 cut(s) 1067
MaeIII GTNAC 8 cut(s) 286, 377, 857, 868, 917, 962, 1140, 1394
MboII GAAGA 5 cut(s) 347, 672, 874, 1249, 1252
MfeI CAATTG 1 cut(s) 1356
MflI RGATCY 1 cut(s) 741
MhlI GDGCHC 3 cut(s) 171, 324, 330
MluCI AATT 5 cut(s) 258, 420, 798, 1356, 1374
MmeI TCCRAC 1 cut(s) 1042
MnlI CCTC 3 cut(s) 464, 1119, 1244
Mph1103I ATGCAT 1 cut(s) 482
MroXI GAANNNNTTC 1 cut(s) 679
MseI TTAA 3 cut(s) 147, 747, 1275
MslI CAYNNNNRTG 1 cut(s) 992
MspA1I CMGCKG 2 cut(s) 1028, 1364
MspR9I CCNGG 4 cut(s) 431, 611, 632, 1382
MunI CAATTG 1 cut(s) 1356
MvaI CCWGG 4 cut(s) 431, 611, 632, 1382
MwoI GCNNNNNNNGC 8 cut(s) 35, 220, 452, 656, 764, 812, 1358, 1361
NlaIV GGNNCC 4 cut(s) 15, 362, 391, 975
NmuCI GTSAC 4 cut(s) 286, 377, 868, 1140
NsiI ATGCAT 1 cut(s) 482
PaeR7I CTCGAG 1 cut(s) 323
PagI TCATGA 2 cut(s) 100, 993
PciSI GCTCTTC 1 cut(s) 685
PdmI GAANNNNTTC 1 cut(s) 679
PfeI GAWTC 2 cut(s) 49, 727
PkrI GCNGC 6 cut(s) 31, 658, 1050, 1174, 1354, 1363
Ple19I CGATCG 1 cut(s) 46
Psp6I CCWGG 4 cut(s) 429, 609, 630, 1380
PspEI GGTNACC 2 cut(s) 917, 962
PspGI CCWGG 4 cut(s) 429, 609, 630, 1380
PspN4I GGNNCC 4 cut(s) 15, 362, 391, 975
PspPI GGNCC 4 cut(s) 389, 416, 571, 689
PspXI VCTCGAGB 1 cut(s) 323
PstI CTGCAG 1 cut(s) 1050
PstNI CAGNNNCTG 1 cut(s) 430
PsuI RGATCY 1 cut(s) 741
PvuI CGATCG 1 cut(s) 46
PvuII CAGCTG 2 cut(s) 1028, 1364
RsaI GTAC 1 cut(s) 1065
RsaNI GTAC 1 cut(s) 1064
RseI CAYNNNNRTG 1 cut(s) 992
SapI GCTCTTC 1 cut(s) 685
SaqAI TTAA 3 cut(s) 147, 747, 1275
SatI GCNGC 6 cut(s) 30, 657, 1049, 1173, 1353, 1362
Sau96I GGNCC 4 cut(s) 389, 416, 571, 689
ScaI AGTACT 1 cut(s) 1065
ScrFI CCNGG 4 cut(s) 431, 611, 632, 1382
SduI GDGCHC 3 cut(s) 171, 324, 330
SexAI ACCWGGT 1 cut(s) 609
SfaNI GCATC 5 cut(s) 94, 115, 542, 672, 1375
SfcI CTRYAG 3 cut(s) 637, 1046, 1251
Sfr274I CTCGAG 1 cut(s) 323
SinI GGWCC 2 cut(s) 389, 416
SlaI CTCGAG 1 cut(s) 323
SmiMI CAYNNNNRTG 1 cut(s) 992
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
Sse9I AATT 5 cut(s) 258, 420, 798, 1356, 1374
SsiI CCGC 1 cut(s) 255
SspMI CTAG 1 cut(s) 1067
StyD4I CCNGG 4 cut(s) 429, 609, 630, 1380
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 3 cut(s) 173, 722, 1146
TaqI TCGA 3 cut(s) 324, 1111, 1236
TaqII GACCGA 1 cut(s) 1128
TasI AATT 5 cut(s) 258, 420, 798, 1356, 1374
TatI WGTACW 1 cut(s) 1063
TfiI GAWTC 2 cut(s) 49, 727
Tru1I TTAA 3 cut(s) 147, 747, 1275
Tru9I TTAA 3 cut(s) 147, 747, 1275
TscAI CASTG 4 cut(s) 176, 216, 828, 1149
TseFI GTSAC 4 cut(s) 286, 377, 868, 1140
TseI GCWGC 6 cut(s) 29, 656, 1048, 1172, 1352, 1361
Tsp45I GTSAC 4 cut(s) 286, 377, 868, 1140
TspDTI ATGAA 9 cut(s) 288, 497, 536, 547, 976, 982, 1074, 1216, 1231
TspRI CASTG 4 cut(s) 176, 216, 828, 1149
VneI GTGCAC 1 cut(s) 167
VpaK11BI GGWCC 2 cut(s) 389, 416
XapI RAATTY 1 cut(s) 798
XcmI CCANNNNNNNNNTGG 1 cut(s) 1321
XhoI CTCGAG 1 cut(s) 323
XmnI GAANNNNTTC 1 cut(s) 679
XspI CTAG 1 cut(s) 1067
ZrmI AGTACT 1 cut(s) 1065
Zsp2I ATGCAT 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.