Rh1CG131000

GABA transporter 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000597
Physical Location & Seq
Forward (+)
28822500 .. 28837673
15174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG131000.1

Sequence Viewer

Length: 516 bp
ATGGGAACAGTTCTTTCCAATTGTATGGGTGTTGATGAGAAGTCTGTACTTCCTACCTTGTTTCTCATGACCAACGTGAAGTCTTGGCTATCACAGTGTGTTGCTATATCGGGATATTGGGCATTTGGTAATCAGGCCAAAGGTACAATTTTACTCAACTTTCTAGTTGATGAGAAGCCTCTGTTGCCGACTTGGGTTCTCTTGAGGACTAATGTCTTCACCTTCTTGCAAGTAGCAGCTGTTAGTGTGGTTTACTTACAACCAACAAATGAAGTACTGGAACGCAAGTTTGTAAACGCCGAGATTGATCAGTTCTCTGTTCGAAATGTAGTACCAAAGTTGGTTTATCGATCATTGTCTGTCGTGATAGCCACAACAGTTGCAGCTATGTGTCCTTTCTTTGGAGACATCAATGCTTTAATCGGAGCATTTGGTTGCATTCCTCTCGACTTAATTTTGCCAATGGTGTTCCACAATGATGTATTCAAGCCATCCAAGTACAGCCTTCTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

171

Amino Acids

18.99

Weight (kDa)

7.63

Isoelectric Point (pI)

17.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 25 - 168 6.6e-24 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08230 AT1G08230 AT1G08230 AT1G08230 AT1G08230
fragaria_vesca FvH4_3g30140 FvH4_7g06340 FvH4_7g06350 FvH4_7g06350
malus_domestica MD02G1244800.v1.1 MD03G1133300.v1.1 MD07G1072100.v1.1 MD07G1072300.v1.1 MD11G1155800.v1.1 MD11G1156000.v1.1
prunus_persica Prupe.2G090300_v2.0.a1 Prupe.2G090500_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1
pyrus_communis pycom02g21070 pycom03g08970 pycom07g05520
rosa_chinensis RchiOBHm_Chr1g0334311 RchiOBHm_Chr1g0334341 RchiOBHm_Chr1g0334351 RchiOBHm_Chr1g0334371 RchiOBHm_Chr1g0334381 RchiOBHm_Chr1g0334431 RchiOBHm_Chr5g0055491 RchiOBHm_Chr5g0055511
rosa_laevigata RLG00000029454 RLG00000029457 RLG00000029458 RLG00000029459 RLG00000029461 RLG00000034991 RLG00000034993
rosa_multiflora Rmu_sc0001673.1_g000036 Rmu_sc0001673.1_g000040 Rmu_sc0016880.1_g000002 Rmu_ssc0000047.1_g000014 Rmu_ssc0000047.1_g000015 Rmu_ssc0000047.1_g000016 Rmu_ssc0000047.1_g000023
rosa_roxburghii Rroxscaffold_1G00024820 Rroxscaffold_1G00024850 Rroxscaffold_1G00024860 Rroxscaffold_4G00316880 Rroxscaffold_4G00316900
rosa_rugosa Rorug01G0113300.1 Rorug01G0113400 Rorug01G0113500 Rorug05G0293200 Rorug05G0293200 Rorug05G0293400.1
rosa_samantha Rh1AG138200 Rh1AG138300 Rh1AG139000 Rh1BG104900 Rh1CG130400 Rh1CG130500 Rh1CG131000 Rh1DG142700 Rh1DG142800 Rh5AG362800 Rh5AG363000 Rh5BG375000 Rh5BG375200 Rh5CG396900 Rh5CG397100 Rh5DG388300 Rh5DG388400
rosa_wichuraiana Rw0G003720 Rw0G003730 Rw0G003740 Rw1G011440 Rw1G011450 Rw5G034150 Rw5G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 98
AfaI GTAC 5 cut(s) 48, 145, 276, 333, 500
AfiI CCNNNNNNNGG 1 cut(s) 401
AgsI TTSAA 1 cut(s) 487
AluBI AGCT 2 cut(s) 239, 386
AluI AGCT 2 cut(s) 239, 386
Alw26I GTCTC 1 cut(s) 399
AoxI GGCC 1 cut(s) 135
ApeKI GCWGC 2 cut(s) 236, 383
AsuHPI GGTGA 1 cut(s) 211
AsuII TTCGAA 1 cut(s) 322
BbsI GAAGAC 1 cut(s) 208
BbvI GCAGC 2 cut(s) 248, 395
BccI CCATC 1 cut(s) 499
BcgI CGANNNNNNTGC 2 cut(s) 427, 461
BclI TGATCA 1 cut(s) 307
BcoDI GTCTC 1 cut(s) 399
BfaI CTAG 1 cut(s) 164
BisI GCNGC 2 cut(s) 237, 384
BlsI GCNGC 2 cut(s) 238, 385
BmcAI AGTACT 1 cut(s) 276
BoxI GACNNNNGTC 1 cut(s) 212
BpiI GAAGAC 1 cut(s) 208
Bpu14I TTCGAA 1 cut(s) 322
BpuEI CTTGAG 1 cut(s) 223
Bsa29I ATCGAT 1 cut(s) 349
Bsc4I CCNNNNNNNGG 1 cut(s) 401
Bse1I ACTGG 1 cut(s) 282
BseCI ATCGAT 1 cut(s) 349
BseGI GGATG 1 cut(s) 491
BseLI CCNNNNNNNGG 1 cut(s) 401
BseNI ACTGG 1 cut(s) 282
BseXI GCAGC 2 cut(s) 248, 395
BshFI GGCC 1 cut(s) 137
BshVI ATCGAT 1 cut(s) 349
BslI CCNNNNNNNGG 1 cut(s) 401
BsmAI GTCTC 1 cut(s) 399
BsmI GAATGC 1 cut(s) 438
BsnI GGCC 1 cut(s) 137
Bsp119I TTCGAA 1 cut(s) 322
Bsp143I GATC 2 cut(s) 307, 350
BspANI GGCC 1 cut(s) 137
BspDI ATCGAT 1 cut(s) 349
BspHI TCATGA 1 cut(s) 66
BspT104I TTCGAA 1 cut(s) 322
BsrI ACTGG 1 cut(s) 282
BssMI GATC 2 cut(s) 307, 350
Bst4CI ACNGT 3 cut(s) 10, 96, 379
BstBI TTCGAA 1 cut(s) 322
BstF5I GGATG 1 cut(s) 491
BstKTI GATC 2 cut(s) 310, 353
BstMAI GTCTC 1 cut(s) 399
BstMBI GATC 2 cut(s) 307, 350
BstMWI GCNNNNNNNGC 1 cut(s) 184
BstPAI GACNNNNGTC 1 cut(s) 212
BstV1I GCAGC 2 cut(s) 248, 395
BstV2I GAAGAC 1 cut(s) 208
BstXI CCANNNNNNTGG 1 cut(s) 25
Bsu15I ATCGAT 1 cut(s) 349
BsuRI GGCC 1 cut(s) 137
BsuTUI ATCGAT 1 cut(s) 349
BtsCI GGATG 1 cut(s) 491
BtsIMutI CAGTG 1 cut(s) 101
CciI TCATGA 1 cut(s) 66
ClaI ATCGAT 1 cut(s) 349
Csp6I GTAC 5 cut(s) 47, 144, 275, 332, 499
CspCI CAANNNNNGTGG 2 cut(s) 361, 396
CviAII CATG 1 cut(s) 67
CviJI RGCY 8 cut(s) 88, 137, 178, 239, 371, 386, 490, 504
CviKI_1 RGCY 8 cut(s) 88, 137, 178, 239, 371, 386, 490, 504
CviQI GTAC 5 cut(s) 47, 144, 275, 332, 499
DpnI GATC 2 cut(s) 309, 352
DpnII GATC 2 cut(s) 307, 350
DraIII CACNNNGTG 1 cut(s) 98
FaeI CATG 1 cut(s) 70
FaiI YATR 4 cut(s) 26, 68, 107, 389
FatI CATG 1 cut(s) 66
FbaI TGATCA 1 cut(s) 307
Fnu4HI GCNGC 2 cut(s) 237, 384
FokI GGATG 1 cut(s) 478
Fsp4HI GCNGC 2 cut(s) 237, 384
FspBI CTAG 1 cut(s) 164
GluI GCNGC 2 cut(s) 237, 384
HaeIII GGCC 1 cut(s) 137
Hin1II CATG 1 cut(s) 70
HphI GGTGA 1 cut(s) 211
Hpy166II GTNNAC 2 cut(s) 253, 295
Hpy188I TCNGA 2 cut(s) 425, 515
Hpy188III TCNNGA 5 cut(s) 67, 111, 202, 364, 446
Hpy8I GTNNAC 2 cut(s) 253, 295
HpyAV CCTTC 2 cut(s) 232, 515
HpyCH4III ACNGT 3 cut(s) 10, 96, 379
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 3 cut(s) 229, 383, 438
HpyF10VI GCNNNNNNNGC 1 cut(s) 184
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 1 cut(s) 70
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 2 cut(s) 307, 350
LmnI GCTCC 1 cut(s) 425
LpnPI CCDG 2 cut(s) 119, 263
Lsp1109I GCAGC 2 cut(s) 248, 395
MaeI CTAG 1 cut(s) 164
MaeII ACGT 1 cut(s) 75
MalI GATC 2 cut(s) 309, 352
MboI GATC 2 cut(s) 307, 350
MboII GAAGA 1 cut(s) 208
MfeI CAATTG 1 cut(s) 19
MluCI AATT 3 cut(s) 19, 147, 453
MnlI CCTC 3 cut(s) 189, 198, 453
MseI TTAA 2 cut(s) 419, 452
MslI CAYNNNNRTG 1 cut(s) 477
MspA1I CMGCKG 1 cut(s) 239
MunI CAATTG 1 cut(s) 19
Mva1269I GAATGC 1 cut(s) 438
MwoI GCNNNNNNNGC 1 cut(s) 184
NdeII GATC 2 cut(s) 307, 350
NlaIII CATG 1 cut(s) 70
NmeAIII GCCGAG 1 cut(s) 325
NspV TTCGAA 1 cut(s) 322
PagI TCATGA 1 cut(s) 66
PctI GAATGC 1 cut(s) 438
PkrI GCNGC 2 cut(s) 238, 385
PshAI GACNNNNGTC 1 cut(s) 212
PvuII CAGCTG 1 cut(s) 239
RsaI GTAC 5 cut(s) 48, 145, 276, 333, 500
RsaNI GTAC 5 cut(s) 47, 144, 275, 332, 499
RseI CAYNNNNRTG 1 cut(s) 477
SaqAI TTAA 2 cut(s) 419, 452
SatI GCNGC 2 cut(s) 237, 384
Sau3AI GATC 2 cut(s) 307, 350
ScaI AGTACT 1 cut(s) 276
SetI ASST 6 cut(s) 59, 78, 145, 224, 241, 388
SfuI TTCGAA 1 cut(s) 322
SmiMI CAYNNNNRTG 1 cut(s) 477
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
Sse9I AATT 3 cut(s) 19, 147, 453
SspMI CTAG 1 cut(s) 164
TaaI ACNGT 3 cut(s) 10, 96, 379
TaiI ACGT 1 cut(s) 78
TaqI TCGA 3 cut(s) 322, 349, 447
TasI AATT 3 cut(s) 19, 147, 453
TatI WGTACW 3 cut(s) 46, 274, 498
Tru1I TTAA 2 cut(s) 419, 452
Tru9I TTAA 2 cut(s) 419, 452
TscAI CASTG 1 cut(s) 101
TseI GCWGC 2 cut(s) 236, 383
TspDTI ATGAA 1 cut(s) 285
TspRI CASTG 1 cut(s) 101
XspI CTAG 1 cut(s) 164
ZrmI AGTACT 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.