MD11G1156000.v1.1

Transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000597
Physical Location & Seq
Reverse (-)
14949839 .. 14952668
2830 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1156000.v1.1.491

Sequence Viewer

Length: 609 bp
ATGTGTACACACACCCCACATATTTCTGCGTTTGATTCTGCTCCCATCCCACTTCTTTCTTTGCTCTTGGTTTTTGTTGAGAGAGAGAGAGAGATGGGGACGCTGCCGCCAAGGTCGGTAGCAGTAGATGATGCTCGAGTAGAGGATGCAAAAGTTGGCCAAGAAGAAGCTGATCGTGATCGCCAACAGAAGCAACTCGATGCTGGCGCTCTTTTTGTTCTCAAATCCAAAGGATCGTGGGTGCACTGCGGTTATCACTTGACAACATCAATTGTTGCTCCACCACTTCTAAGTTTGCCGTACGCTTTCACCTTCCTCGGATGTATGGCCGGAATTTTGTGTTTGGTCATCGAAGCACTAGTTACTTTCTACTCATACAATTTAATCTCTTTGGTTTTTGAAAACTATGCTCAATTGGGTCGTCGCCATCTCCGATTGAGAGACATGGCTCTTGACATTCTAGGTTTTAGTCGACATATCGACATATGCCACATTGCTTCACATGGGTCGTTGCAGCCAACTTTAAGAGTCAAGAAATGCCTGCCACTGTTTGTGGCCCAAGCTAGTGGTCTCCCTCATCTCATTAGAGGCATGATTGATAAGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

203

Amino Acids

22.5

Weight (kDa)

7.69

Isoelectric Point (pI)

54.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 77 - 155 3e-11 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08230 AT1G08230 AT1G08230 AT1G08230 AT1G08230
fragaria_vesca FvH4_3g30140 FvH4_7g06340 FvH4_7g06350 FvH4_7g06350
malus_domestica MD02G1244800.v1.1 MD03G1133300.v1.1 MD07G1072100.v1.1 MD07G1072300.v1.1 MD11G1155800.v1.1 MD11G1156000.v1.1
prunus_persica Prupe.2G090300_v2.0.a1 Prupe.2G090500_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1
pyrus_communis pycom02g21070 pycom03g08970 pycom07g05520
rosa_chinensis RchiOBHm_Chr1g0334311 RchiOBHm_Chr1g0334341 RchiOBHm_Chr1g0334351 RchiOBHm_Chr1g0334371 RchiOBHm_Chr1g0334381 RchiOBHm_Chr1g0334431 RchiOBHm_Chr5g0055491 RchiOBHm_Chr5g0055511
rosa_laevigata RLG00000029454 RLG00000029457 RLG00000029458 RLG00000029459 RLG00000029461 RLG00000034991 RLG00000034993
rosa_multiflora Rmu_sc0001673.1_g000036 Rmu_sc0001673.1_g000040 Rmu_sc0016880.1_g000002 Rmu_ssc0000047.1_g000014 Rmu_ssc0000047.1_g000015 Rmu_ssc0000047.1_g000016 Rmu_ssc0000047.1_g000023
rosa_roxburghii Rroxscaffold_1G00024820 Rroxscaffold_1G00024850 Rroxscaffold_1G00024860 Rroxscaffold_4G00316880 Rroxscaffold_4G00316900
rosa_rugosa Rorug01G0113300.1 Rorug01G0113400 Rorug01G0113500 Rorug05G0293200 Rorug05G0293200 Rorug05G0293400.1
rosa_samantha Rh1AG138200 Rh1AG138300 Rh1AG139000 Rh1BG104900 Rh1CG130400 Rh1CG130500 Rh1CG131000 Rh1DG142700 Rh1DG142800 Rh5AG362800 Rh5AG363000 Rh5BG375000 Rh5BG375200 Rh5CG396900 Rh5CG397100 Rh5DG388300 Rh5DG388400
rosa_wichuraiana Rw0G003720 Rw0G003730 Rw0G003740 Rw1G011440 Rw1G011450 Rw5G034150 Rw5G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 472
AciI CCGC 2 cut(s) 107, 249
AclWI GGATC 1 cut(s) 241
AcoI YGGCCR 2 cut(s) 157, 327
AcsI RAATTY 1 cut(s) 333
AfaI GTAC 2 cut(s) 7, 302
AgsI TTSAA 1 cut(s) 401
AhlI ACTAGT 1 cut(s) 358
AluBI AGCT 2 cut(s) 170, 563
AluI AGCT 2 cut(s) 170, 563
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 2 cut(s) 435, 575
Alw44I GTGCAC 1 cut(s) 242
AlwI GGATC 1 cut(s) 241
Ama87I CYCGRG 1 cut(s) 135
AoxI GGCC 3 cut(s) 157, 327, 555
ApaLI GTGCAC 1 cut(s) 242
ApeKI GCWGC 2 cut(s) 103, 514
ApoI RAATTY 1 cut(s) 333
AspLEI GCGC 1 cut(s) 209
AspS9I GGNCC 1 cut(s) 556
AsuHPI GGTGA 1 cut(s) 301
AvaI CYCGRG 1 cut(s) 135
BaeGI GKGCMC 1 cut(s) 246
BalI TGGCCA 1 cut(s) 159
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 2 cut(s) 90, 526
BccI CCATC 3 cut(s) 53, 88, 435
BceAI ACGGC 1 cut(s) 283
BcoDI GTCTC 2 cut(s) 435, 575
BcuI ACTAGT 1 cut(s) 358
BfaI CTAG 3 cut(s) 359, 461, 564
BfoI RGCGCY 1 cut(s) 210
BisI GCNGC 3 cut(s) 104, 107, 515
BlsI GCNGC 3 cut(s) 105, 108, 516
BmeT110I CYCGRG 1 cut(s) 135
BmgT120I GGNCC 1 cut(s) 556
BmsI GCATC 3 cut(s) 121, 136, 190
BsaBI GATNNNNATC 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 575
BsaJI CCNNGG 2 cut(s) 110, 316
Bse3DI GCAATG 1 cut(s) 492
Bse8I GATNNNNATC 1 cut(s) 177
BseDI CCNNGG 2 cut(s) 110, 316
BseGI GGATG 3 cut(s) 45, 151, 326
BseJI GATNNNNATC 1 cut(s) 177
BseMI GCAATG 1 cut(s) 492
BseSI GKGCMC 1 cut(s) 246
BseXI GCAGC 2 cut(s) 90, 526
BshFI GGCC 3 cut(s) 159, 329, 557
BsiHKAI GWGCWC 1 cut(s) 246
BsiHKCI CYCGRG 1 cut(s) 135
BsiSI CCGG 1 cut(s) 330
BsiWI CGTACG 1 cut(s) 300
BslFI GGGAC 1 cut(s) 112
BsmAI GTCTC 2 cut(s) 435, 575
BsmFI GGGAC 1 cut(s) 112
BsnI GGCC 3 cut(s) 159, 329, 557
Bso31I GGTCTC 1 cut(s) 575
BsoBI CYCGRG 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 246
Bsp1407I TGTACA 1 cut(s) 5
Bsp143I GATC 3 cut(s) 172, 178, 233
BspACI CCGC 2 cut(s) 107, 249
BspANI GGCC 3 cut(s) 159, 329, 557
BspPI GGATC 1 cut(s) 241
BspTNI GGTCTC 1 cut(s) 575
BsrDI GCAATG 1 cut(s) 492
BsrGI TGTACA 1 cut(s) 5
BssECI CCNNGG 2 cut(s) 110, 316
BssMI GATC 3 cut(s) 172, 178, 233
BssT1I CCWWGG 1 cut(s) 110
Bst4CI ACNGT 1 cut(s) 549
BstAUI TGTACA 1 cut(s) 5
BstC8I GCNNGC 2 cut(s) 205, 542
BstDEI CTNAG 1 cut(s) 290
BstF5I GGATG 3 cut(s) 45, 151, 326
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 1 cut(s) 209
BstKTI GATC 3 cut(s) 175, 181, 236
BstMAI GTCTC 2 cut(s) 435, 575
BstMBI GATC 3 cut(s) 172, 178, 233
BstSLI GKGCMC 1 cut(s) 246
BstV1I GCAGC 2 cut(s) 90, 526
BstXI CCANNNNNNTGG 1 cut(s) 566
BsuRI GGCC 3 cut(s) 159, 329, 557
BtsCI GGATG 3 cut(s) 45, 151, 326
BtsI GCAGTG 1 cut(s) 244
BtsIMutI CAGTG 2 cut(s) 244, 545
Cac8I GCNNGC 2 cut(s) 205, 542
CfoI GCGC 1 cut(s) 209
Cfr13I GGNCC 1 cut(s) 556
CseI GACGC 1 cut(s) 109
Csp6I GTAC 2 cut(s) 6, 301
CviAII CATG 3 cut(s) 445, 503, 592
CviJI RGCY 7 cut(s) 159, 170, 329, 449, 517, 557, 563
CviKI_1 RGCY 7 cut(s) 159, 170, 329, 449, 517, 557, 563
CviQI GTAC 2 cut(s) 6, 301
DdeI CTNAG 1 cut(s) 290
DpnI GATC 3 cut(s) 174, 180, 235
DpnII GATC 3 cut(s) 172, 178, 233
EaeI YGGCCR 2 cut(s) 157, 327
Eco130I CCWWGG 1 cut(s) 110
Eco31I GGTCTC 1 cut(s) 575
Eco88I CYCGRG 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 110
ErhI CCWWGG 1 cut(s) 110
FaeI CATG 3 cut(s) 448, 506, 595
FaqI GGGAC 1 cut(s) 112
FatI CATG 3 cut(s) 444, 502, 591
FauNDI CATATG 1 cut(s) 485
FblI GTMKAC 1 cut(s) 472
Fnu4HI GCNGC 3 cut(s) 104, 107, 515
FokI GGATG 3 cut(s) 32, 158, 333
Fsp4HI GCNGC 3 cut(s) 104, 107, 515
FspBI CTAG 3 cut(s) 359, 461, 564
GlaI GCGC 1 cut(s) 208
GluI GCNGC 3 cut(s) 104, 107, 515
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 3 cut(s) 159, 329, 557
HapII CCGG 1 cut(s) 330
HgaI GACGC 1 cut(s) 109
HhaI GCGC 1 cut(s) 209
Hin1II CATG 3 cut(s) 448, 506, 595
Hin6I GCGC 1 cut(s) 207
HinP1I GCGC 1 cut(s) 207
HincII GTYRAC 1 cut(s) 473
HindII GTYRAC 1 cut(s) 473
HinfI GANTC 2 cut(s) 35, 528
HpaII CCGG 1 cut(s) 330
HphI GGTGA 1 cut(s) 301
Hpy166II GTNNAC 4 cut(s) 6, 8, 244, 473
Hpy188I TCNGA 2 cut(s) 320, 434
Hpy188III TCNNGA 3 cut(s) 176, 452, 532
Hpy8I GTNNAC 4 cut(s) 6, 8, 244, 473
Hpy99I CGWCG 1 cut(s) 426
HpyAV CCTTC 1 cut(s) 322
HpyCH4III ACNGT 1 cut(s) 549
HpyCH4V TGCA 3 cut(s) 149, 244, 514
HpyF3I CTNAG 1 cut(s) 290
Hsp92II CATG 3 cut(s) 448, 506, 595
HspAI GCGC 1 cut(s) 207
Kzo9I GATC 3 cut(s) 172, 178, 233
LmnI GCTCC 2 cut(s) 46, 283
LpnPI CCDG 3 cut(s) 189, 343, 554
Lsp1109I GCAGC 2 cut(s) 90, 526
LweI GCATC 3 cut(s) 121, 136, 190
MaeI CTAG 3 cut(s) 359, 461, 564
MaeIII GTNAC 1 cut(s) 361
MalI GATC 3 cut(s) 174, 180, 235
MboI GATC 3 cut(s) 172, 178, 233
MboII GAAGA 1 cut(s) 176
MfeI CAATTG 2 cut(s) 270, 413
MhlI GDGCHC 1 cut(s) 246
MlsI TGGCCA 1 cut(s) 159
MluCI AATT 4 cut(s) 270, 333, 379, 413
MluNI TGGCCA 1 cut(s) 159
MlyI GAGTC 1 cut(s) 537
MnlI CCTC 4 cut(s) 136, 326, 581, 585
Mox20I TGGCCA 1 cut(s) 159
MscI TGGCCA 1 cut(s) 159
MseI TTAA 3 cut(s) 383, 524, 607
Msp20I TGGCCA 1 cut(s) 159
MspI CCGG 1 cut(s) 330
MunI CAATTG 2 cut(s) 270, 413
NdeI CATATG 1 cut(s) 485
NdeII GATC 3 cut(s) 172, 178, 233
NlaIII CATG 3 cut(s) 448, 506, 595
PaeR7I CTCGAG 1 cut(s) 135
PcsI WCGNNNNNNNCGW 1 cut(s) 430
PfeI GAWTC 1 cut(s) 35
Pfl23II CGTACG 1 cut(s) 300
PkrI GCNGC 3 cut(s) 105, 108, 516
PleI GAGTC 1 cut(s) 536
PpsI GAGTC 1 cut(s) 536
PspLI CGTACG 1 cut(s) 300
PspPI GGNCC 1 cut(s) 556
PspXI VCTCGAGB 1 cut(s) 135
RsaI GTAC 2 cut(s) 7, 302
RsaNI GTAC 2 cut(s) 6, 301
SalI GTCGAC 1 cut(s) 471
SaqAI TTAA 3 cut(s) 383, 524, 607
SatI GCNGC 3 cut(s) 104, 107, 515
Sau3AI GATC 3 cut(s) 172, 178, 233
Sau96I GGNCC 1 cut(s) 556
SchI GAGTC 1 cut(s) 537
SduI GDGCHC 1 cut(s) 246
SetI ASST 5 cut(s) 116, 172, 314, 466, 565
SfaNI GCATC 3 cut(s) 121, 136, 190
Sfr274I CTCGAG 1 cut(s) 135
SlaI CTCGAG 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 135
SmoI CTYRAG 1 cut(s) 135
SpeI ACTAGT 1 cut(s) 358
Sse9I AATT 4 cut(s) 270, 333, 379, 413
SsiI CCGC 2 cut(s) 107, 249
SspMI CTAG 3 cut(s) 359, 461, 564
StyI CCWWGG 1 cut(s) 110
TaaI ACNGT 1 cut(s) 549
TaqI TCGA 5 cut(s) 136, 198, 351, 472, 480
TasI AATT 4 cut(s) 270, 333, 379, 413
TatI WGTACW 1 cut(s) 5
TauI GCSGC 1 cut(s) 109
TfiI GAWTC 1 cut(s) 35
Tru1I TTAA 3 cut(s) 383, 524, 607
Tru9I TTAA 3 cut(s) 383, 524, 607
TscAI CASTG 2 cut(s) 251, 552
TseI GCWGC 2 cut(s) 103, 514
TspRI CASTG 2 cut(s) 251, 552
VneI GTGCAC 1 cut(s) 242
XapI RAATTY 1 cut(s) 333
XhoI CTCGAG 1 cut(s) 135
XmiI GTMKAC 1 cut(s) 472
XspI CTAG 3 cut(s) 359, 461, 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.