RLG00000029454

GABA transporter 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000597
Physical Location & Seq
Reverse (-)
38956934 .. 38958620
1687 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029454

Sequence Viewer

Length: 624 bp
ATGGATCAATTTTCTATCTGTAATGTTGTGCCGCGATTGATTCTCCGGTCGGTCACTATCGTGGTAGCTACATTTTTTGCTGCGATGTTACCTTTCTTCGGAGATATCATGGCATTATTTGGGGCTACTATAGCACCGCCAGTCAAAGGAAAATTGTTAAAGGGATTATGTGTATGTTATGCTGTTGTACTTTCAATATTTTTCAGTGTTGCTATATCGGGATATTGGGCATTTAGTAATCAGGCCAAAGGTACAATTTTACTCAACTTTCTAGTTAATGAGAAGCCTCTGTCGCCGACTTGGGTTCTCTTGAGGACTAATGTCTTCACCTTCTTGCAAGTAGCAGCTGTTAGTGTGGTTTACTTACAACCAACAAATGAAGTACTGGAACGCAAGTTTGTCAACGCCGAGATTGATCAGTTCTCTGTTCGAAATGTAGTACCAAGGTTGGTTTATCGATCATTGCCTGTCGTGATAGCCATAACAGTTGCAGCTATGTTTCCTTTCTTTGGAGACATCAATGCTTTAATCGGAGCATTTGGTTGCATTCCTCTCGACTTCATTTTGCCAATGGTGTTCCACAATGATGTATTCAAGCCATCCAAGTACAGCCTTTTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

208

Amino Acids

22.99

Weight (kDa)

9.16

Isoelectric Point (pI)

26.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 51 - 204 6.9e-25 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08230 AT1G08230 AT1G08230 AT1G08230 AT1G08230
fragaria_vesca FvH4_3g30140 FvH4_7g06340 FvH4_7g06350 FvH4_7g06350
malus_domestica MD02G1244800.v1.1 MD03G1133300.v1.1 MD07G1072100.v1.1 MD07G1072300.v1.1 MD11G1155800.v1.1 MD11G1156000.v1.1
prunus_persica Prupe.2G090300_v2.0.a1 Prupe.2G090500_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1
pyrus_communis pycom02g21070 pycom03g08970 pycom07g05520
rosa_chinensis RchiOBHm_Chr1g0334311 RchiOBHm_Chr1g0334341 RchiOBHm_Chr1g0334351 RchiOBHm_Chr1g0334371 RchiOBHm_Chr1g0334381 RchiOBHm_Chr1g0334431 RchiOBHm_Chr5g0055491 RchiOBHm_Chr5g0055511
rosa_laevigata RLG00000029454 RLG00000029457 RLG00000029458 RLG00000029459 RLG00000029461 RLG00000034991 RLG00000034993
rosa_multiflora Rmu_sc0001673.1_g000036 Rmu_sc0001673.1_g000040 Rmu_sc0016880.1_g000002 Rmu_ssc0000047.1_g000014 Rmu_ssc0000047.1_g000015 Rmu_ssc0000047.1_g000016 Rmu_ssc0000047.1_g000023
rosa_roxburghii Rroxscaffold_1G00024820 Rroxscaffold_1G00024850 Rroxscaffold_1G00024860 Rroxscaffold_4G00316880 Rroxscaffold_4G00316900
rosa_rugosa Rorug01G0113300.1 Rorug01G0113400 Rorug01G0113500 Rorug05G0293200 Rorug05G0293200 Rorug05G0293400.1
rosa_samantha Rh1AG138200 Rh1AG138300 Rh1AG139000 Rh1BG104900 Rh1CG130400 Rh1CG130500 Rh1CG131000 Rh1DG142700 Rh1DG142800 Rh5AG362800 Rh5AG363000 Rh5BG375000 Rh5BG375200 Rh5CG396900 Rh5CG397100 Rh5DG388300 Rh5DG388400
rosa_wichuraiana Rw0G003720 Rw0G003730 Rw0G003740 Rw1G011440 Rw1G011450 Rw5G034150 Rw5G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 34
AciI CCGC 2 cut(s) 32, 137
AclWI GGATC 1 cut(s) 12
AfaI GTAC 5 cut(s) 189, 253, 384, 441, 608
AfiI CCNNNNNNNGG 3 cut(s) 98, 146, 509
AgsI TTSAA 2 cut(s) 195, 595
AleI CACNNNNGTG 1 cut(s) 59
AluBI AGCT 3 cut(s) 68, 347, 494
AluI AGCT 3 cut(s) 68, 347, 494
Alw26I GTCTC 1 cut(s) 507
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 243
ApeKI GCWGC 3 cut(s) 80, 344, 491
AsuHPI GGTGA 1 cut(s) 319
AsuII TTCGAA 1 cut(s) 430
BbsI GAAGAC 1 cut(s) 316
BbvI GCAGC 3 cut(s) 67, 356, 503
BccI CCATC 1 cut(s) 607
BcgI CGANNNNNNTGC 2 cut(s) 535, 569
BclI TGATCA 1 cut(s) 415
BcoDI GTCTC 1 cut(s) 507
BfaI CTAG 1 cut(s) 272
BfmI CTRYAG 1 cut(s) 129
BisI GCNGC 4 cut(s) 32, 81, 345, 492
BlsI GCNGC 4 cut(s) 33, 82, 346, 493
BmcAI AGTACT 1 cut(s) 384
BoxI GACNNNNGTC 1 cut(s) 320
BpiI GAAGAC 1 cut(s) 316
Bpu14I TTCGAA 1 cut(s) 430
BpuEI CTTGAG 1 cut(s) 331
Bsa29I ATCGAT 1 cut(s) 457
BsaJI CCNNGG 1 cut(s) 443
BsaWI WCCGGW 1 cut(s) 45
Bsc4I CCNNNNNNNGG 3 cut(s) 98, 146, 509
Bse1I ACTGG 2 cut(s) 140, 390
Bse3DI GCAATG 1 cut(s) 461
BseCI ATCGAT 1 cut(s) 457
BseDI CCNNGG 1 cut(s) 443
BseGI GGATG 1 cut(s) 599
BseLI CCNNNNNNNGG 3 cut(s) 98, 146, 509
BseMI GCAATG 1 cut(s) 461
BseNI ACTGG 2 cut(s) 140, 390
BseXI GCAGC 3 cut(s) 67, 356, 503
Bsh1236I CGCG 1 cut(s) 34
Bsh1285I CGRYCG 1 cut(s) 50
BshFI GGCC 1 cut(s) 245
BshVI ATCGAT 1 cut(s) 457
BsiEI CGRYCG 1 cut(s) 50
BsiSI CCGG 1 cut(s) 46
BslI CCNNNNNNNGG 3 cut(s) 98, 146, 509
BsmAI GTCTC 1 cut(s) 507
BsmI GAATGC 1 cut(s) 546
BsnI GGCC 1 cut(s) 245
Bsp119I TTCGAA 1 cut(s) 430
Bsp143I GATC 3 cut(s) 4, 415, 458
BspACI CCGC 2 cut(s) 32, 137
BspANI GGCC 1 cut(s) 245
BspDI ATCGAT 1 cut(s) 457
BspFNI CGCG 1 cut(s) 34
BspPI GGATC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 430
BsrDI GCAATG 1 cut(s) 461
BsrI ACTGG 2 cut(s) 140, 390
BssECI CCNNGG 1 cut(s) 443
BssMI GATC 3 cut(s) 4, 415, 458
BssT1I CCWWGG 1 cut(s) 443
Bst4CI ACNGT 1 cut(s) 487
BstBI TTCGAA 1 cut(s) 430
BstF5I GGATG 1 cut(s) 599
BstFNI CGCG 1 cut(s) 34
BstKTI GATC 3 cut(s) 7, 418, 461
BstMAI GTCTC 1 cut(s) 507
BstMBI GATC 3 cut(s) 4, 415, 458
BstMCI CGRYCG 1 cut(s) 50
BstMWI GCNNNNNNNGC 2 cut(s) 131, 292
BstPAI GACNNNNGTC 1 cut(s) 320
BstSFI CTRYAG 1 cut(s) 129
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 3 cut(s) 67, 356, 503
BstV2I GAAGAC 1 cut(s) 316
Bsu15I ATCGAT 1 cut(s) 457
BsuRI GGCC 1 cut(s) 245
BsuTUI ATCGAT 1 cut(s) 457
BtgZI GCGATG 1 cut(s) 98
BtsCI GGATG 1 cut(s) 599
BtsIMutI CAGTG 1 cut(s) 211
ClaI ATCGAT 1 cut(s) 457
Csp6I GTAC 5 cut(s) 188, 252, 383, 440, 607
CviAII CATG 1 cut(s) 109
CviJI RGCY 9 cut(s) 68, 125, 245, 286, 347, 479, 494, 598, 612
CviKI_1 RGCY 9 cut(s) 68, 125, 245, 286, 347, 479, 494, 598, 612
CviQI GTAC 5 cut(s) 188, 252, 383, 440, 607
DpnI GATC 3 cut(s) 6, 417, 460
DpnII GATC 3 cut(s) 4, 415, 458
Eco130I CCWWGG 1 cut(s) 443
Eco32I GATATC 1 cut(s) 106
EcoRV GATATC 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 443
ErhI CCWWGG 1 cut(s) 443
FaeI CATG 1 cut(s) 112
FaiI YATR 8 cut(s) 110, 131, 169, 175, 180, 215, 482, 497
FatI CATG 1 cut(s) 108
FbaI TGATCA 1 cut(s) 415
Fnu4HI GCNGC 4 cut(s) 32, 81, 345, 492
FokI GGATG 1 cut(s) 586
Fsp4HI GCNGC 4 cut(s) 32, 81, 345, 492
FspBI CTAG 1 cut(s) 272
GluI GCNGC 4 cut(s) 32, 81, 345, 492
HaeIII GGCC 1 cut(s) 245
HapII CCGG 1 cut(s) 46
Hin1II CATG 1 cut(s) 112
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HinfI GANTC 1 cut(s) 40
HpaII CCGG 1 cut(s) 46
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 2 cut(s) 361, 403
Hpy188I TCNGA 3 cut(s) 101, 533, 623
Hpy188III TCNNGA 4 cut(s) 219, 310, 472, 554
Hpy8I GTNNAC 2 cut(s) 361, 403
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 1 cut(s) 487
HpyCH4V TGCA 3 cut(s) 337, 491, 546
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 292
Hsp92II CATG 1 cut(s) 112
Ksp22I TGATCA 1 cut(s) 415
Kzo9I GATC 3 cut(s) 4, 415, 458
LmnI GCTCC 1 cut(s) 533
LpnPI CCDG 5 cut(s) 59, 153, 227, 371, 480
Lsp1109I GCAGC 3 cut(s) 67, 356, 503
MaeI CTAG 1 cut(s) 272
MaeIII GTNAC 2 cut(s) 52, 87
MalI GATC 3 cut(s) 6, 417, 460
MboI GATC 3 cut(s) 4, 415, 458
MboII GAAGA 2 cut(s) 88, 316
MluCI AATT 3 cut(s) 8, 152, 255
MnlI CCTC 3 cut(s) 297, 306, 561
MseI TTAA 3 cut(s) 158, 276, 527
MslI CAYNNNNRTG 2 cut(s) 59, 585
MspA1I CMGCKG 1 cut(s) 347
MspI CCGG 1 cut(s) 46
Mva1269I GAATGC 1 cut(s) 546
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 2 cut(s) 131, 292
NdeII GATC 3 cut(s) 4, 415, 458
NlaIII CATG 1 cut(s) 112
NmeAIII GCCGAG 1 cut(s) 433
NmuCI GTSAC 1 cut(s) 52
NspV TTCGAA 1 cut(s) 430
OliI CACNNNNGTG 1 cut(s) 59
PctI GAATGC 1 cut(s) 546
PfeI GAWTC 1 cut(s) 40
PkrI GCNGC 4 cut(s) 33, 82, 346, 493
PshAI GACNNNNGTC 1 cut(s) 320
PvuII CAGCTG 1 cut(s) 347
RsaI GTAC 5 cut(s) 189, 253, 384, 441, 608
RsaNI GTAC 5 cut(s) 188, 252, 383, 440, 607
RseI CAYNNNNRTG 2 cut(s) 59, 585
SaqAI TTAA 3 cut(s) 158, 276, 527
SatI GCNGC 4 cut(s) 32, 81, 345, 492
Sau3AI GATC 3 cut(s) 4, 415, 458
ScaI AGTACT 1 cut(s) 384
SetI ASST 7 cut(s) 70, 94, 253, 332, 349, 449, 496
SfcI CTRYAG 1 cut(s) 129
SfuI TTCGAA 1 cut(s) 430
SmiMI CAYNNNNRTG 2 cut(s) 59, 585
SmlI CTYRAG 1 cut(s) 310
SmoI CTYRAG 1 cut(s) 310
Sse9I AATT 3 cut(s) 8, 152, 255
SsiI CCGC 2 cut(s) 32, 137
SspI AATATT 1 cut(s) 198
SspMI CTAG 1 cut(s) 272
StyI CCWWGG 1 cut(s) 443
TaaI ACNGT 1 cut(s) 487
TaqI TCGA 3 cut(s) 430, 457, 555
TaqII GACCGA 1 cut(s) 40
TasI AATT 3 cut(s) 8, 152, 255
TatI WGTACW 3 cut(s) 187, 382, 606
TauI GCSGC 1 cut(s) 34
TfiI GAWTC 1 cut(s) 40
Tru1I TTAA 3 cut(s) 158, 276, 527
Tru9I TTAA 3 cut(s) 158, 276, 527
TscAI CASTG 1 cut(s) 211
TseFI GTSAC 1 cut(s) 52
TseI GCWGC 3 cut(s) 80, 344, 491
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 2 cut(s) 393, 550
TspRI CASTG 1 cut(s) 211
XspI CTAG 1 cut(s) 272
ZrmI AGTACT 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.