RLG00000029459

GABA transporter 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000597
Physical Location & Seq
Reverse (-)
39038976 .. 39039670
695 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029459

Sequence Viewer

Length: 528 bp
ATGTCTGGGTATTGGGCGTTTGGCAACCAAGCTATGGGAACAGTTCTATCCAATTTTATGGGTGCTGATGGGAAGCTTTTACCCCCTACCTGGTTTTTGCTCATGACCAATCTCTTCACTCTTGTGCAAGTCTTGGCTGTCACAGTGGTTTACTTGCAACCAACAAATGAAGTGTTTGAGAAGAAATTTGCAGACCCAAAAATGGATCAATTTTCCATCCGTAATGTTGTGCCGCGATTGATTCTCCGGTCCGTCACCGTCGTGGTAGCTACATTTTTTGCTGCGATGTTACCTTTCTTCGGAGATATCATGGCATTGTTTGGGGCGTTTGGATGCATTCCTCTAGATTTCATTTTGCCAATGATATTCTACAATGTGGCTTTCAAGCCCTCAAAGCAAAGCCTCATATTTTGGGTTAACACATTGATAGCAGGAGTATCGTTCTTGTTGGTTGGGGTAGGGGCTGTAGCATCTGTTAGACAGATTGTTCTTGATGCTAAAACATATCGCCTATTTGCTAACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

176

Amino Acids

19.44

Weight (kDa)

9.41

Isoelectric Point (pI)

21.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 1 - 157 1.6e-23 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08230 AT1G08230 AT1G08230 AT1G08230 AT1G08230
fragaria_vesca FvH4_3g30140 FvH4_7g06340 FvH4_7g06350 FvH4_7g06350
malus_domestica MD02G1244800.v1.1 MD03G1133300.v1.1 MD07G1072100.v1.1 MD07G1072300.v1.1 MD11G1155800.v1.1 MD11G1156000.v1.1
prunus_persica Prupe.2G090300_v2.0.a1 Prupe.2G090500_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1
pyrus_communis pycom02g21070 pycom03g08970 pycom07g05520
rosa_chinensis RchiOBHm_Chr1g0334311 RchiOBHm_Chr1g0334341 RchiOBHm_Chr1g0334351 RchiOBHm_Chr1g0334371 RchiOBHm_Chr1g0334381 RchiOBHm_Chr1g0334431 RchiOBHm_Chr5g0055491 RchiOBHm_Chr5g0055511
rosa_laevigata RLG00000029454 RLG00000029457 RLG00000029458 RLG00000029459 RLG00000029461 RLG00000034991 RLG00000034993
rosa_multiflora Rmu_sc0001673.1_g000036 Rmu_sc0001673.1_g000040 Rmu_sc0016880.1_g000002 Rmu_ssc0000047.1_g000014 Rmu_ssc0000047.1_g000015 Rmu_ssc0000047.1_g000016 Rmu_ssc0000047.1_g000023
rosa_roxburghii Rroxscaffold_1G00024820 Rroxscaffold_1G00024850 Rroxscaffold_1G00024860 Rroxscaffold_4G00316880 Rroxscaffold_4G00316900
rosa_rugosa Rorug01G0113300.1 Rorug01G0113400 Rorug01G0113500 Rorug05G0293200 Rorug05G0293200 Rorug05G0293400.1
rosa_samantha Rh1AG138200 Rh1AG138300 Rh1AG139000 Rh1BG104900 Rh1CG130400 Rh1CG130500 Rh1CG131000 Rh1DG142700 Rh1DG142800 Rh5AG362800 Rh5AG363000 Rh5BG375000 Rh5BG375200 Rh5CG396900 Rh5CG397100 Rh5DG388300 Rh5DG388400
rosa_wichuraiana Rw0G003720 Rw0G003730 Rw0G003740 Rw1G011440 Rw1G011450 Rw5G034150 Rw5G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 34
AccII CGCG 1 cut(s) 235
AciI CCGC 1 cut(s) 233
AclWI GGATC 1 cut(s) 213
AcsI RAATTY 1 cut(s) 185
AfiI CCNNNNNNNGG 4 cut(s) 34, 90, 202, 299
AflIII ACRYGT 1 cut(s) 522
AgsI TTSAA 1 cut(s) 385
AjnI CCWGG 1 cut(s) 89
AleI CACNNNNGTG 2 cut(s) 122, 260
AluBI AGCT 3 cut(s) 32, 76, 269
AluI AGCT 3 cut(s) 32, 76, 269
AlwI GGATC 1 cut(s) 213
ApeKI GCWGC 1 cut(s) 281
ApoI RAATTY 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 249
AsuHPI GGTGA 1 cut(s) 247
AvaII GGWCC 1 cut(s) 249
BbvI GCAGC 1 cut(s) 268
BccI CCATC 2 cut(s) 62, 224
BcgI CGANNNNNNTGC 2 cut(s) 420, 454
BciT130I CCWGG 1 cut(s) 91
BfaI CTAG 1 cut(s) 344
BfmI CTRYAG 1 cut(s) 465
BisI GCNGC 2 cut(s) 233, 282
BlsI GCNGC 2 cut(s) 234, 283
Bme1390I CCNGG 1 cut(s) 91
Bme18I GGWCC 1 cut(s) 249
BmgT120I GGNCC 1 cut(s) 249
BmrFI CCNGG 1 cut(s) 91
BmsI GCATC 3 cut(s) 323, 479, 484
BsaWI WCCGGW 1 cut(s) 246
Bsc4I CCNNNNNNNGG 4 cut(s) 34, 90, 202, 299
BseBI CCWGG 1 cut(s) 91
BseGI GGATG 2 cut(s) 216, 338
BseLI CCNNNNNNNGG 4 cut(s) 34, 90, 202, 299
BseXI GCAGC 1 cut(s) 268
Bsh1236I CGCG 1 cut(s) 235
BsiSI CCGG 1 cut(s) 247
BslI CCNNNNNNNGG 4 cut(s) 34, 90, 202, 299
BsmI GAATGC 1 cut(s) 336
Bsp143I GATC 1 cut(s) 205
BspACI CCGC 1 cut(s) 233
BspFNI CGCG 1 cut(s) 235
BspHI TCATGA 1 cut(s) 102
BspPI GGATC 1 cut(s) 213
BssMI GATC 1 cut(s) 205
Bst2UI CCWGG 1 cut(s) 91
Bst4CI ACNGT 3 cut(s) 43, 145, 259
Bst6I CTCTTC 1 cut(s) 119
BstF5I GGATG 2 cut(s) 216, 338
BstFNI CGCG 1 cut(s) 235
BstKTI GATC 1 cut(s) 208
BstMBI GATC 1 cut(s) 205
BstMWI GCNNNNNNNGC 1 cut(s) 394
BstNI CCWGG 1 cut(s) 91
BstNSI RCATGY 1 cut(s) 526
BstSCI CCNGG 1 cut(s) 89
BstSFI CTRYAG 1 cut(s) 465
BstUI CGCG 1 cut(s) 235
BstV1I GCAGC 1 cut(s) 268
BstXI CCANNNNNNTGG 1 cut(s) 58
BtgZI GCGATG 1 cut(s) 299
BtsCI GGATG 2 cut(s) 216, 338
BtsIMutI CAGTG 1 cut(s) 150
CciI TCATGA 1 cut(s) 102
Cfr13I GGNCC 1 cut(s) 249
CpoI CGGWCCG 1 cut(s) 249
CsiI ACCWGGT 1 cut(s) 89
CspI CGGWCCG 1 cut(s) 249
CviAII CATG 3 cut(s) 103, 310, 523
CviJI RGCY 8 cut(s) 32, 76, 137, 269, 380, 388, 402, 464
CviKI_1 RGCY 8 cut(s) 32, 76, 137, 269, 380, 388, 402, 464
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Eco32I GATATC 1 cut(s) 307
Eco47I GGWCC 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 89
EcoRV GATATC 1 cut(s) 307
EcoT22I ATGCAT 1 cut(s) 338
FaeI CATG 3 cut(s) 106, 313, 526
FaiI YATR 7 cut(s) 35, 59, 104, 311, 407, 505, 524
FatI CATG 3 cut(s) 102, 309, 522
Fnu4HI GCNGC 2 cut(s) 233, 282
FokI GGATG 2 cut(s) 203, 345
Fsp4HI GCNGC 2 cut(s) 233, 282
FspBI CTAG 1 cut(s) 344
GluI GCNGC 2 cut(s) 233, 282
HapII CCGG 1 cut(s) 247
Hin1II CATG 3 cut(s) 106, 313, 526
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HindIII AAGCTT 1 cut(s) 74
HinfI GANTC 1 cut(s) 241
HpaI GTTAAC 1 cut(s) 418
HpaII CCGG 1 cut(s) 247
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 2 cut(s) 151, 418
Hpy188I TCNGA 1 cut(s) 302
Hpy188III TCNNGA 3 cut(s) 103, 344, 491
Hpy8I GTNNAC 2 cut(s) 151, 418
Hpy99I CGWCG 1 cut(s) 263
HpyCH4III ACNGT 3 cut(s) 43, 145, 259
HpyCH4V TGCA 4 cut(s) 127, 157, 191, 336
HpyF10VI GCNNNNNNNGC 1 cut(s) 394
Hsp92II CATG 3 cut(s) 106, 313, 526
KspAI GTTAAC 1 cut(s) 418
Kzo9I GATC 1 cut(s) 205
LpnPI CCDG 4 cut(s) 76, 103, 260, 417
Lsp1109I GCAGC 1 cut(s) 268
LweI GCATC 3 cut(s) 323, 479, 484
MabI ACCWGGT 1 cut(s) 89
MaeI CTAG 1 cut(s) 344
MaeIII GTNAC 3 cut(s) 139, 253, 288
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MboII GAAGA 3 cut(s) 106, 193, 289
MluCI AATT 3 cut(s) 52, 185, 209
MnlI CCTC 3 cut(s) 351, 400, 413
Mph1103I ATGCAT 1 cut(s) 338
MseI TTAA 1 cut(s) 417
MslI CAYNNNNRTG 2 cut(s) 122, 260
MspI CCGG 1 cut(s) 247
MspR9I CCNGG 1 cut(s) 91
Mva1269I GAATGC 1 cut(s) 336
MvaI CCWGG 1 cut(s) 91
MvnI CGCG 1 cut(s) 235
MwoI GCNNNNNNNGC 1 cut(s) 394
NdeII GATC 1 cut(s) 205
NlaIII CATG 3 cut(s) 106, 313, 526
NmuCI GTSAC 2 cut(s) 139, 253
NsiI ATGCAT 1 cut(s) 338
NspI RCATGY 1 cut(s) 526
OliI CACNNNNGTG 2 cut(s) 122, 260
PagI TCATGA 1 cut(s) 102
PciI ACATGT 1 cut(s) 522
PctI GAATGC 1 cut(s) 336
PfeI GAWTC 1 cut(s) 241
PflMI CCANNNNNTGG 1 cut(s) 34
PkrI GCNGC 2 cut(s) 234, 283
PscI ACATGT 1 cut(s) 522
Psp6I CCWGG 1 cut(s) 89
PspGI CCWGG 1 cut(s) 89
PspPI GGNCC 1 cut(s) 249
RseI CAYNNNNRTG 2 cut(s) 122, 260
Rsr2I CGGWCCG 1 cut(s) 249
RsrII CGGWCCG 1 cut(s) 249
SaqAI TTAA 1 cut(s) 417
SatI GCNGC 2 cut(s) 233, 282
Sau3AI GATC 1 cut(s) 205
Sau96I GGNCC 1 cut(s) 249
ScrFI CCNGG 1 cut(s) 91
SetI ASST 5 cut(s) 34, 78, 92, 271, 295
SexAI ACCWGGT 1 cut(s) 89
SfaNI GCATC 3 cut(s) 323, 479, 484
SfcI CTRYAG 1 cut(s) 465
SinI GGWCC 1 cut(s) 249
SmiMI CAYNNNNRTG 2 cut(s) 122, 260
Sse9I AATT 3 cut(s) 52, 185, 209
SsiI CCGC 1 cut(s) 233
SspMI CTAG 1 cut(s) 344
StyD4I CCNGG 1 cut(s) 89
TaaI ACNGT 3 cut(s) 43, 145, 259
TasI AATT 3 cut(s) 52, 185, 209
TauI GCSGC 1 cut(s) 235
TfiI GAWTC 1 cut(s) 241
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TscAI CASTG 1 cut(s) 150
TseFI GTSAC 2 cut(s) 139, 253
TseI GCWGC 1 cut(s) 281
Tsp45I GTSAC 2 cut(s) 139, 253
TspDTI ATGAA 2 cut(s) 183, 340
TspGWI ACGGA 2 cut(s) 209, 241
TspRI CASTG 1 cut(s) 150
Van91I CCANNNNNTGG 1 cut(s) 34
VpaK11BI GGWCC 1 cut(s) 249
XapI RAATTY 1 cut(s) 185
XbaI TCTAGA 1 cut(s) 343
XceI RCATGY 1 cut(s) 526
XspI CTAG 1 cut(s) 344
Zsp2I ATGCAT 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.