pycom03g08970

Transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000597
Physical Location & Seq
Reverse (-)
7389475 .. 7401712
12238 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g08970.1

Sequence Viewer

Length: 1095 bp
ATGTTCGTCGAAGGGACCGCTTTGACTGTATGGGCTACGCAGAGAGAGATGGGGACGCTGCCACCAACATCGGTAGTAGTAGATGATGATCGATTAGATGATGCAAAAGTTGGCCGCGAAGAAGATGATCATGATCACGAACAGAAGCAACTCGATGCCGGTGCTCGTTTTGTTCTCAAATCCAAAGGATCATGGGTGCACTGCGGTTATCACTTGACAACATCGATTGTTGCTCCGGCACTCCTGAGTTTGCCGTACGCTTTCACCTTCCTCGGATGGGAGGCCGGAATTTTGTGTTTAGTCATCGGAGCATTAGTTACTTTCTATTCGTACAATTTAATCTCTTTGGTTCTTGAACACTATGCTCAATTGGGTCATCGCCATCTACGATTCAGAGACATGGCTCATGACATTTTAGGTCCGAGATGGAGTCGTTATTTTGTCGGACCAATTCAATTCCTAGTATGCTATGGCGCTGTTGTGGCCTGTACTCTTTTGGGAGGACAATGCATGAAGGCAGTTTACTTGCTGACCAACGCAAATGGGACTATGAAGCTATACGAGTTTGTGATCATATTTGGGTGCTTAATGCTGCTTTTGGCTCAAATCCCATCTTTTCACTCTCTCAGGCACATCAACTTGGTGTCTGTCTTTCTTTGCCTAGCATATAGTGCTTGTACCACTGCTGCCTGCATCTACATTGGAAGTTCTTCCAAGGGACCGCATAAGAACTACTCCTTGAATGGCAACAGTCAAAGTCGAGTTTTTGGGGTCTTTAATGCTAATGCCATCATTGCTACAACATTTGGCAACGGTATCATTCCAGAAATTCAGGCAACAATAGCACCACCAGTGAAGGGAAAGATGTTCAAGGGACTCTGTGTTTGTTATGCAGTTGTGACGATGACTTTCTTCAGTGTTACCATCTCTGGTTATTGGGCATTTGGCAACCAATCTGAAGGGCTCATCCTTAGCAACTTCTTGGATGATGGCAAACCTTTGGTGCCCAAGTGGTTTATCTTCATGATCAACCGTTATTTTCATCATACTCCAACTATCAGCGGTTGGTGTGGTTTATCTCCAGCCCACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

365

Amino Acids

40.22

Weight (kDa)

8.21

Isoelectric Point (pI)

35.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 62 - 341 3.4e-45 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08230 AT1G08230 AT1G08230 AT1G08230 AT1G08230
fragaria_vesca FvH4_3g30140 FvH4_7g06340 FvH4_7g06350 FvH4_7g06350
malus_domestica MD02G1244800.v1.1 MD03G1133300.v1.1 MD07G1072100.v1.1 MD07G1072300.v1.1 MD11G1155800.v1.1 MD11G1156000.v1.1
prunus_persica Prupe.2G090300_v2.0.a1 Prupe.2G090500_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1
pyrus_communis pycom02g21070 pycom03g08970 pycom07g05520
rosa_chinensis RchiOBHm_Chr1g0334311 RchiOBHm_Chr1g0334341 RchiOBHm_Chr1g0334351 RchiOBHm_Chr1g0334371 RchiOBHm_Chr1g0334381 RchiOBHm_Chr1g0334431 RchiOBHm_Chr5g0055491 RchiOBHm_Chr5g0055511
rosa_laevigata RLG00000029454 RLG00000029457 RLG00000029458 RLG00000029459 RLG00000029461 RLG00000034991 RLG00000034993
rosa_multiflora Rmu_sc0001673.1_g000036 Rmu_sc0001673.1_g000040 Rmu_sc0016880.1_g000002 Rmu_ssc0000047.1_g000014 Rmu_ssc0000047.1_g000015 Rmu_ssc0000047.1_g000016 Rmu_ssc0000047.1_g000023
rosa_roxburghii Rroxscaffold_1G00024820 Rroxscaffold_1G00024850 Rroxscaffold_1G00024860 Rroxscaffold_4G00316880 Rroxscaffold_4G00316900
rosa_rugosa Rorug01G0113300.1 Rorug01G0113400 Rorug01G0113500 Rorug05G0293200 Rorug05G0293200 Rorug05G0293400.1
rosa_samantha Rh1AG138200 Rh1AG138300 Rh1AG139000 Rh1BG104900 Rh1CG130400 Rh1CG130500 Rh1CG131000 Rh1DG142700 Rh1DG142800 Rh5AG362800 Rh5AG363000 Rh5BG375000 Rh5BG375200 Rh5CG396900 Rh5CG397100 Rh5DG388300 Rh5DG388400
rosa_wichuraiana Rw0G003720 Rw0G003730 Rw0G003740 Rw1G011440 Rw1G011450 Rw5G034150 Rw5G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1003
AccII CGCG 1 cut(s) 117
AciI CCGC 5 cut(s) 18, 115, 204, 722, 1062
AclWI GGATC 1 cut(s) 196
AcoI YGGCCR 1 cut(s) 112
AcsI RAATTY 2 cut(s) 288, 828
AcuI CTGAAG 2 cut(s) 898, 978
AfaI GTAC 4 cut(s) 257, 332, 490, 679
AfiI CCNNNNNNNGG 2 cut(s) 277, 857
AgsI TTSAA 4 cut(s) 356, 455, 742, 871
AluBI AGCT 1 cut(s) 556
AluI AGCT 1 cut(s) 556
Alw21I GWGCWC 2 cut(s) 166, 201
Alw26I GTCTC 1 cut(s) 390
Alw44I GTGCAC 1 cut(s) 197
AlwI GGATC 1 cut(s) 196
AoxI GGCC 3 cut(s) 112, 282, 483
ApaLI GTGCAC 1 cut(s) 197
ApeKI GCWGC 3 cut(s) 58, 592, 686
ApoI RAATTY 2 cut(s) 288, 828
ArsI GACNNNNNNTTYG 2 cut(s) 867, 899
Asp700I GAANNNNTTC 1 cut(s) 709
AspLEI GCGC 1 cut(s) 476
AspS9I GGNCC 4 cut(s) 15, 419, 446, 719
AsuHPI GGTGA 1 cut(s) 256
AvaII GGWCC 4 cut(s) 15, 419, 446, 719
BaeGI GKGCMC 2 cut(s) 201, 1008
BanI GGYRCC 1 cut(s) 1003
BanII GRGCYC 1 cut(s) 966
BarI GAAGNNNNNNTAC 2 cut(s) 506, 538
Bbv12I GWGCWC 2 cut(s) 166, 201
BbvI GCAGC 3 cut(s) 45, 579, 673
BccI CCATC 8 cut(s) 43, 270, 390, 420, 619, 797, 932, 983
BceAI ACGGC 1 cut(s) 238
BcgI CGANNNNNNTGC 2 cut(s) 143, 177
BclI TGATCA 4 cut(s) 127, 133, 570, 1026
BcoDI GTCTC 1 cut(s) 390
BfaI CTAG 2 cut(s) 461, 662
BfoI RGCGCY 1 cut(s) 477
BisI GCNGC 4 cut(s) 59, 115, 593, 687
BlsI GCNGC 4 cut(s) 60, 116, 594, 688
Bme18I GGWCC 4 cut(s) 15, 419, 446, 719
BmgT120I GGNCC 4 cut(s) 15, 419, 446, 719
BmiI GGNNCC 3 cut(s) 16, 720, 1005
BmsI GCATC 3 cut(s) 91, 145, 702
BpmI CTGGAG 1 cut(s) 1065
Bpu10I CCTNAGC 1 cut(s) 971
Bsa29I ATCGAT 2 cut(s) 91, 224
BsaBI GATNNNNATC 2 cut(s) 87, 132
BsaJI CCNNGG 2 cut(s) 271, 714
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
Bsc4I CCNNNNNNNGG 2 cut(s) 277, 857
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 851
Bse3DI GCAATG 1 cut(s) 792
Bse8I GATNNNNATC 2 cut(s) 87, 132
BseCI ATCGAT 2 cut(s) 91, 224
BseDI CCNNGG 2 cut(s) 271, 714
BseGI GGATG 3 cut(s) 281, 966, 991
BseJI GATNNNNATC 2 cut(s) 87, 132
BseLI CCNNNNNNNGG 2 cut(s) 277, 857
BseMI GCAATG 1 cut(s) 792
BseMII CTCAG 2 cut(s) 236, 640
BseNI ACTGG 1 cut(s) 851
BseSI GKGCMC 2 cut(s) 201, 1008
BseXI GCAGC 3 cut(s) 45, 579, 673
Bsh1236I CGCG 1 cut(s) 117
BshFI GGCC 3 cut(s) 114, 284, 485
BshNI GGYRCC 1 cut(s) 1003
BshVI ATCGAT 2 cut(s) 91, 224
BsiHKAI GWGCWC 2 cut(s) 166, 201
BsiSI CCGG 3 cut(s) 159, 236, 285
BsiWI CGTACG 1 cut(s) 255
BslFI GGGAC 5 cut(s) 28, 67, 559, 732, 888
BslI CCNNNNNNNGG 2 cut(s) 277, 857
BsmAI GTCTC 1 cut(s) 390
BsmFI GGGAC 5 cut(s) 28, 67, 559, 732, 888
BsnI GGCC 3 cut(s) 114, 284, 485
Bsp1286I GDGCHC 4 cut(s) 166, 201, 966, 1008
Bsp143I GATC 6 cut(s) 88, 127, 133, 188, 570, 1026
BspACI CCGC 5 cut(s) 18, 115, 204, 722, 1062
BspANI GGCC 3 cut(s) 114, 284, 485
BspCNI CTCAG 2 cut(s) 237, 639
BspDI ATCGAT 2 cut(s) 91, 224
BspFNI CGCG 1 cut(s) 117
BspHI TCATGA 3 cut(s) 130, 406, 1023
BspLI GGNNCC 3 cut(s) 16, 720, 1005
BspPI GGATC 1 cut(s) 196
BspT107I GGYRCC 1 cut(s) 1003
BsrDI GCAATG 1 cut(s) 792
BsrFI RCCGGY 1 cut(s) 158
BsrI ACTGG 1 cut(s) 851
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 2 cut(s) 271, 714
BssMI GATC 6 cut(s) 88, 127, 133, 188, 570, 1026
BssT1I CCWWGG 1 cut(s) 714
Bst4CI ACNGT 4 cut(s) 28, 752, 815, 1034
BstAPI GCANNNNNTGC 1 cut(s) 671
BstC8I GCNNGC 1 cut(s) 691
BstDEI CTNAG 3 cut(s) 245, 626, 971
BstF5I GGATG 3 cut(s) 281, 966, 991
BstFNI CGCG 1 cut(s) 117
BstH2I RGCGCY 1 cut(s) 477
BstHHI GCGC 1 cut(s) 476
BstKTI GATC 6 cut(s) 91, 130, 136, 191, 573, 1029
BstMAI GTCTC 1 cut(s) 390
BstMBI GATC 6 cut(s) 88, 127, 133, 188, 570, 1026
BstMWI GCNNNNNNNGC 4 cut(s) 482, 671, 794, 842
BstSLI GKGCMC 2 cut(s) 201, 1008
BstUI CGCG 1 cut(s) 117
BstV1I GCAGC 3 cut(s) 45, 579, 673
Bsu15I ATCGAT 2 cut(s) 91, 224
BsuRI GGCC 3 cut(s) 114, 284, 485
BsuTUI ATCGAT 2 cut(s) 91, 224
BtgZI GCGATG 1 cut(s) 362
BtsCI GGATG 3 cut(s) 281, 966, 991
BtsI GCAGTG 2 cut(s) 199, 681
BtsIMutI CAGTG 4 cut(s) 199, 681, 858, 922
Cac8I GCNNGC 1 cut(s) 691
CciI TCATGA 3 cut(s) 130, 406, 1023
CfoI GCGC 1 cut(s) 476
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 4 cut(s) 15, 419, 446, 719
ClaI ATCGAT 2 cut(s) 91, 224
CseI GACGC 1 cut(s) 64
Csp6I GTAC 4 cut(s) 256, 331, 489, 678
CviAII CATG 6 cut(s) 131, 192, 400, 407, 511, 1024
CviJI RGCY 9 cut(s) 35, 114, 284, 404, 485, 556, 602, 964, 1085
CviKI_1 RGCY 9 cut(s) 35, 114, 284, 404, 485, 556, 602, 964, 1085
CviQI GTAC 4 cut(s) 256, 331, 489, 678
DdeI CTNAG 3 cut(s) 245, 626, 971
DpnI GATC 6 cut(s) 90, 129, 135, 190, 572, 1028
DpnII GATC 6 cut(s) 88, 127, 133, 188, 570, 1026
EaeI YGGCCR 1 cut(s) 112
Eco130I CCWWGG 1 cut(s) 714
Eco24I GRGCYC 1 cut(s) 966
Eco47I GGWCC 4 cut(s) 15, 419, 446, 719
Eco57I CTGAAG 2 cut(s) 898, 978
EcoT14I CCWWGG 1 cut(s) 714
EcoT22I ATGCAT 1 cut(s) 512
EcoT38I GRGCYC 1 cut(s) 966
ErhI CCWWGG 1 cut(s) 714
FaeI CATG 6 cut(s) 134, 195, 403, 410, 514, 1027
FaqI GGGAC 5 cut(s) 28, 67, 559, 732, 888
FatI CATG 6 cut(s) 130, 191, 399, 406, 510, 1023
FbaI TGATCA 4 cut(s) 127, 133, 570, 1026
Fnu4HI GCNGC 4 cut(s) 59, 115, 593, 687
FokI GGATG 3 cut(s) 288, 953, 998
FriOI GRGCYC 1 cut(s) 966
Fsp4HI GCNGC 4 cut(s) 59, 115, 593, 687
FspBI CTAG 2 cut(s) 461, 662
GlaI GCGC 1 cut(s) 475
GluI GCNGC 4 cut(s) 59, 115, 593, 687
GsuI CTGGAG 1 cut(s) 1065
HaeII RGCGCY 1 cut(s) 477
HaeIII GGCC 3 cut(s) 114, 284, 485
HapII CCGG 3 cut(s) 159, 236, 285
HgaI GACGC 1 cut(s) 64
HhaI GCGC 1 cut(s) 476
Hin1II CATG 6 cut(s) 134, 195, 403, 410, 514, 1027
Hin6I GCGC 1 cut(s) 474
HinP1I GCGC 1 cut(s) 474
HinfI GANTC 3 cut(s) 390, 430, 876
HpaII CCGG 3 cut(s) 159, 236, 285
HphI GGTGA 1 cut(s) 256
Hpy166II GTNNAC 2 cut(s) 199, 523
Hpy188I TCNGA 6 cut(s) 275, 308, 395, 423, 446, 958
Hpy188III TCNNGA 7 cut(s) 131, 137, 244, 353, 407, 824, 1024
Hpy8I GTNNAC 2 cut(s) 199, 523
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 5 cut(s) 5, 277, 508, 850, 953
HpyCH4III ACNGT 4 cut(s) 28, 752, 815, 1034
HpyCH4V TGCA 5 cut(s) 104, 199, 510, 693, 893
HpyF10VI GCNNNNNNNGC 4 cut(s) 482, 671, 794, 842
HpyF3I CTNAG 3 cut(s) 245, 626, 971
Hsp92II CATG 6 cut(s) 134, 195, 403, 410, 514, 1027
HspAI GCGC 1 cut(s) 474
Ksp22I TGATCA 4 cut(s) 127, 133, 570, 1026
Kzo9I GATC 6 cut(s) 88, 127, 133, 188, 570, 1026
LmnI GCTCC 2 cut(s) 238, 308
Lsp1109I GCAGC 3 cut(s) 45, 579, 673
LweI GCATC 3 cut(s) 91, 145, 702
MaeI CTAG 2 cut(s) 461, 662
MaeIII GTNAC 3 cut(s) 316, 898, 919
MalI GATC 6 cut(s) 90, 129, 135, 190, 572, 1028
MboI GATC 6 cut(s) 88, 127, 133, 188, 570, 1026
MboII GAAGA 5 cut(s) 131, 134, 702, 904, 1012
MfeI CAATTG 1 cut(s) 368
MhlI GDGCHC 4 cut(s) 166, 201, 966, 1008
MluCI AATT 6 cut(s) 288, 334, 368, 450, 455, 828
MlyI GAGTC 2 cut(s) 439, 870
MmeI TCCRAC 2 cut(s) 424, 1076
MnlI CCTC 3 cut(s) 274, 281, 494
Mph1103I ATGCAT 1 cut(s) 512
MroXI GAANNNNTTC 1 cut(s) 709
MseI TTAA 3 cut(s) 338, 587, 777
MspA1I CMGCKG 1 cut(s) 1062
MspI CCGG 3 cut(s) 159, 236, 285
MunI CAATTG 1 cut(s) 368
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 4 cut(s) 482, 671, 794, 842
NdeII GATC 6 cut(s) 88, 127, 133, 188, 570, 1026
NlaIII CATG 6 cut(s) 134, 195, 403, 410, 514, 1027
NlaIV GGNNCC 3 cut(s) 16, 720, 1005
NmuCI GTSAC 1 cut(s) 898
NsiI ATGCAT 1 cut(s) 512
PagI TCATGA 3 cut(s) 130, 406, 1023
PcsI WCGNNNNNNNCGW 1 cut(s) 385
PdmI GAANNNNTTC 1 cut(s) 709
PfeI GAWTC 1 cut(s) 390
Pfl23II CGTACG 1 cut(s) 255
PkrI GCNGC 4 cut(s) 60, 116, 594, 688
PleI GAGTC 2 cut(s) 438, 870
PpsI GAGTC 2 cut(s) 438, 870
PspLI CGTACG 1 cut(s) 255
PspN4I GGNNCC 3 cut(s) 16, 720, 1005
PspPI GGNCC 4 cut(s) 15, 419, 446, 719
RsaI GTAC 4 cut(s) 257, 332, 490, 679
RsaNI GTAC 4 cut(s) 256, 331, 489, 678
SaqAI TTAA 3 cut(s) 338, 587, 777
SatI GCNGC 4 cut(s) 59, 115, 593, 687
Sau3AI GATC 6 cut(s) 88, 127, 133, 188, 570, 1026
Sau96I GGNCC 4 cut(s) 15, 419, 446, 719
SchI GAGTC 2 cut(s) 439, 870
SduI GDGCHC 4 cut(s) 166, 201, 966, 1008
SetI ASST 4 cut(s) 269, 421, 558, 1000
SfaNI GCATC 3 cut(s) 91, 145, 702
SinI GGWCC 4 cut(s) 15, 419, 446, 719
Sse9I AATT 6 cut(s) 288, 334, 368, 450, 455, 828
SsiI CCGC 5 cut(s) 18, 115, 204, 722, 1062
SspMI CTAG 2 cut(s) 461, 662
StyI CCWWGG 1 cut(s) 714
TaaI ACNGT 4 cut(s) 28, 752, 815, 1034
TaqI TCGA 5 cut(s) 9, 91, 153, 224, 760
TasI AATT 6 cut(s) 288, 334, 368, 450, 455, 828
TatI WGTACW 1 cut(s) 488
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 1 cut(s) 390
Tru1I TTAA 3 cut(s) 338, 587, 777
Tru9I TTAA 3 cut(s) 338, 587, 777
TscAI CASTG 4 cut(s) 206, 688, 858, 922
TseFI GTSAC 1 cut(s) 898
TseI GCWGC 3 cut(s) 58, 592, 686
Tsp45I GTSAC 1 cut(s) 898
TspDTI ATGAA 4 cut(s) 527, 566, 1012, 1031
TspRI CASTG 4 cut(s) 206, 688, 858, 922
VneI GTGCAC 1 cut(s) 197
VpaK11BI GGWCC 4 cut(s) 15, 419, 446, 719
XapI RAATTY 2 cut(s) 288, 828
XmnI GAANNNNTTC 1 cut(s) 709
XspI CTAG 2 cut(s) 461, 662
Zsp2I ATGCAT 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.