MD11G1155800.v1.1

Transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000597
Physical Location & Seq
Reverse (-)
14931465 .. 14932148
684 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1155800.v1.1.491

Sequence Viewer

Length: 534 bp
ATGAAGGGAAAAATGTTCAAGGGACTATGTGTTTGTTATGCAGTAGTGACAATGATTTTCTTCAGTGTTGCCATCTCTGGCTATTGGGCATTTGGCAACCAAGCTGAAGGCCTCATCCTTAGCAACTTCTTGGATGATGGGAAACCTTTGGTGCCAAAGTGGTTCATCTTGATGATCAACCTTTTCACCATACTCCAACTATCAACCGTTGGCGTGTTCTCTGCTCGCAATGTGATCCCAAGGGTAATCACTCGCTCAATGTCTGTCATCTTAGCAACCATCATAGCAGCAATGCTTCCATTTTTCGGGGACATCAATTCGGTTATTGGGGCTTTTGGTTTCATGCCCCTCGACTCCATCTTGCCTGTTGTGTTCTATAACTTGACCTTCAAGCCATCTAAAAGAAGCCCCATTTTTTTGTTAAACACCACTATTGCTGTGGTTTTCTCAATCTTGGGGGTTCTAGCTGCAATTGCTGCTGTAAGACAAATAAGCCTCGATGCCAAAACTTATCGGTTATTTGCTAATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

178

Amino Acids

19.42

Weight (kDa)

9.88

Isoelectric Point (pI)

35.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 4 - 67 5e-09 Transmembrane amino acid transporter protein
Aa_trans PF01490 81 - 163 6.7e-10 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08230 AT1G08230 AT1G08230 AT1G08230 AT1G08230
fragaria_vesca FvH4_3g30140 FvH4_7g06340 FvH4_7g06350 FvH4_7g06350
malus_domestica MD02G1244800.v1.1 MD03G1133300.v1.1 MD07G1072100.v1.1 MD07G1072300.v1.1 MD11G1155800.v1.1 MD11G1156000.v1.1
prunus_persica Prupe.2G090300_v2.0.a1 Prupe.2G090500_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1
pyrus_communis pycom02g21070 pycom03g08970 pycom07g05520
rosa_chinensis RchiOBHm_Chr1g0334311 RchiOBHm_Chr1g0334341 RchiOBHm_Chr1g0334351 RchiOBHm_Chr1g0334371 RchiOBHm_Chr1g0334381 RchiOBHm_Chr1g0334431 RchiOBHm_Chr5g0055491 RchiOBHm_Chr5g0055511
rosa_laevigata RLG00000029454 RLG00000029457 RLG00000029458 RLG00000029459 RLG00000029461 RLG00000034991 RLG00000034993
rosa_multiflora Rmu_sc0001673.1_g000036 Rmu_sc0001673.1_g000040 Rmu_sc0016880.1_g000002 Rmu_ssc0000047.1_g000014 Rmu_ssc0000047.1_g000015 Rmu_ssc0000047.1_g000016 Rmu_ssc0000047.1_g000023
rosa_roxburghii Rroxscaffold_1G00024820 Rroxscaffold_1G00024850 Rroxscaffold_1G00024860 Rroxscaffold_4G00316880 Rroxscaffold_4G00316900
rosa_rugosa Rorug01G0113300.1 Rorug01G0113400 Rorug01G0113500 Rorug05G0293200 Rorug05G0293200 Rorug05G0293400.1
rosa_samantha Rh1AG138200 Rh1AG138300 Rh1AG139000 Rh1BG104900 Rh1CG130400 Rh1CG130500 Rh1CG131000 Rh1DG142700 Rh1DG142800 Rh5AG362800 Rh5AG363000 Rh5BG375000 Rh5BG375200 Rh5CG396900 Rh5CG397100 Rh5DG388300 Rh5DG388400
rosa_wichuraiana Rw0G003720 Rw0G003730 Rw0G003740 Rw1G011440 Rw1G011450 Rw5G034150 Rw5G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 151
AclWI GGATC 1 cut(s) 229
AcuI CTGAAG 2 cut(s) 46, 126
AfiI CCNNNNNNNGG 1 cut(s) 305
AgsI TTSAA 2 cut(s) 19, 391
AluBI AGCT 2 cut(s) 104, 467
AluI AGCT 2 cut(s) 104, 467
AlwI GGATC 1 cut(s) 229
AoxI GGCC 1 cut(s) 109
ApeKI GCWGC 3 cut(s) 287, 467, 476
ArsI GACNNNNNNTTYG 2 cut(s) 15, 47
AsuHPI GGTGA 1 cut(s) 178
BanI GGYRCC 1 cut(s) 151
BbvI GCAGC 3 cut(s) 299, 454, 463
BccI CCATC 5 cut(s) 80, 131, 287, 365, 403
BclI TGATCA 1 cut(s) 174
BfaI CTAG 1 cut(s) 464
BisI GCNGC 3 cut(s) 288, 468, 477
BlsI GCNGC 3 cut(s) 289, 469, 478
BmiI GGNNCC 1 cut(s) 153
BmsI GCATC 1 cut(s) 490
Bpu10I CCTNAGC 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 239
Bsc4I CCNNNNNNNGG 1 cut(s) 305
Bse3DI GCAATG 2 cut(s) 235, 297
BseDI CCNNGG 1 cut(s) 239
BseGI GGATG 2 cut(s) 114, 139
BseLI CCNNNNNNNGG 1 cut(s) 305
BseMI GCAATG 2 cut(s) 235, 297
BseXI GCAGC 3 cut(s) 299, 454, 463
BshFI GGCC 1 cut(s) 111
BshNI GGYRCC 1 cut(s) 151
BslFI GGGAC 2 cut(s) 36, 323
BslI CCNNNNNNNGG 1 cut(s) 305
BsmFI GGGAC 2 cut(s) 36, 323
BsnI GGCC 1 cut(s) 111
Bsp143I GATC 2 cut(s) 174, 234
BspANI GGCC 1 cut(s) 111
BspLI GGNNCC 1 cut(s) 153
BspPI GGATC 1 cut(s) 229
BspT107I GGYRCC 1 cut(s) 151
BsrDI GCAATG 2 cut(s) 235, 297
BssECI CCNNGG 1 cut(s) 239
BssMI GATC 2 cut(s) 174, 234
BssT1I CCWWGG 1 cut(s) 239
Bst4CI ACNGT 1 cut(s) 208
BstAPI GCANNNNNTGC 1 cut(s) 476
BstC8I GCNNGC 1 cut(s) 226
BstDEI CTNAG 2 cut(s) 119, 271
BstF5I GGATG 2 cut(s) 114, 139
BstKTI GATC 2 cut(s) 177, 237
BstMBI GATC 2 cut(s) 174, 234
BstMWI GCNNNNNNNGC 2 cut(s) 473, 476
BstV1I GCAGC 3 cut(s) 299, 454, 463
BsuRI GGCC 1 cut(s) 111
BtsCI GGATG 2 cut(s) 114, 139
BtsIMutI CAGTG 1 cut(s) 70
Cac8I GCNNGC 1 cut(s) 226
CviAII CATG 1 cut(s) 343
CviJI RGCY 8 cut(s) 81, 104, 111, 332, 394, 408, 467, 495
CviKI_1 RGCY 8 cut(s) 81, 104, 111, 332, 394, 408, 467, 495
DdeI CTNAG 2 cut(s) 119, 271
DpnI GATC 2 cut(s) 176, 236
DpnII GATC 2 cut(s) 174, 234
Eco130I CCWWGG 1 cut(s) 239
Eco147I AGGCCT 1 cut(s) 111
Eco57I CTGAAG 2 cut(s) 46, 126
EcoT14I CCWWGG 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 239
FaeI CATG 1 cut(s) 346
FaiI YATR 7 cut(s) 28, 39, 191, 284, 344, 378, 532
FaqI GGGAC 2 cut(s) 36, 323
FatI CATG 1 cut(s) 342
FbaI TGATCA 1 cut(s) 174
Fnu4HI GCNGC 3 cut(s) 288, 468, 477
FokI GGATG 2 cut(s) 101, 146
Fsp4HI GCNGC 3 cut(s) 288, 468, 477
FspBI CTAG 1 cut(s) 464
GluI GCNGC 3 cut(s) 288, 468, 477
HaeIII GGCC 1 cut(s) 111
Hin1II CATG 1 cut(s) 346
HinfI GANTC 1 cut(s) 353
HphI GGTGA 1 cut(s) 178
Hpy188III TCNNGA 1 cut(s) 169
HpyAV CCTTC 2 cut(s) 101, 397
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4V TGCA 2 cut(s) 41, 470
HpyF10VI GCNNNNNNNGC 2 cut(s) 473, 476
HpyF3I CTNAG 2 cut(s) 119, 271
Hsp92II CATG 1 cut(s) 346
Ksp22I TGATCA 1 cut(s) 174
Kzo9I GATC 2 cut(s) 174, 234
LpnPI CCDG 2 cut(s) 63, 378
Lsp1109I GCAGC 3 cut(s) 299, 454, 463
LweI GCATC 1 cut(s) 490
MaeI CTAG 1 cut(s) 464
MaeIII GTNAC 1 cut(s) 46
MalI GATC 2 cut(s) 176, 236
MboI GATC 2 cut(s) 174, 234
MboII GAAGA 1 cut(s) 52
MfeI CAATTG 1 cut(s) 471
MluCI AATT 2 cut(s) 316, 471
MlyI GAGTC 1 cut(s) 347
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 3 cut(s) 122, 359, 506
MseI TTAA 1 cut(s) 422
MslI CAYNNNNRTG 1 cut(s) 170
MunI CAATTG 1 cut(s) 471
MwoI GCNNNNNNNGC 2 cut(s) 473, 476
NdeII GATC 2 cut(s) 174, 234
NlaIII CATG 1 cut(s) 346
NlaIV GGNNCC 1 cut(s) 153
NmuCI GTSAC 1 cut(s) 46
PceI AGGCCT 1 cut(s) 111
PkrI GCNGC 3 cut(s) 289, 469, 478
PleI GAGTC 1 cut(s) 347
PpsI GAGTC 1 cut(s) 347
PspN4I GGNNCC 1 cut(s) 153
RseI CAYNNNNRTG 1 cut(s) 170
SaqAI TTAA 1 cut(s) 422
SatI GCNGC 3 cut(s) 288, 468, 477
Sau3AI GATC 2 cut(s) 174, 234
SchI GAGTC 1 cut(s) 347
SetI ASST 5 cut(s) 106, 148, 183, 389, 469
SfaNI GCATC 1 cut(s) 490
SmiMI CAYNNNNRTG 1 cut(s) 170
Sse9I AATT 2 cut(s) 316, 471
SseBI AGGCCT 1 cut(s) 111
SspMI CTAG 1 cut(s) 464
StuI AGGCCT 1 cut(s) 111
StyI CCWWGG 1 cut(s) 239
TaaI ACNGT 1 cut(s) 208
TaqI TCGA 2 cut(s) 351, 498
TasI AATT 2 cut(s) 316, 471
Tru1I TTAA 1 cut(s) 422
Tru9I TTAA 1 cut(s) 422
TscAI CASTG 1 cut(s) 70
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 3 cut(s) 287, 467, 476
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 3 cut(s) 17, 154, 331
TspRI CASTG 1 cut(s) 70
XcmI CCANNNNNNNNNTGG 1 cut(s) 436
XspI CTAG 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.