RchiOBHm_Chr1g0334341

GABA transporter 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000597
Physical Location & Seq
Forward (+)
26515577 .. 26517697
2121 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56307

Sequence Viewer

Length: 786 bp
ATGTCGTCTGAAGGCCTTTTTGGCATAGTCCTTCATGGGGCAAATATTTTGTCGGTCCTCTGCAATTTTGGATATGCTATGGTGCAGTCATCGCTTGCACATTACTTGGAGGGCAGAGCCTTAAGAATTCCCGATGGAACAATGAAGCTGTACCAGTTTATTATTATGTTCGGAAGCGTCACACTCATTTTGGCTCAAATGCCATCCTTCCACTCCTTAAGGCATATTAACCTCGTTTCTCTAATCCTTTGTCTTGCATATAGCGCCTGCGTCACTGCTGGCTGCATATACATTGGGCATACGAACAATGCTCCTGTAAAGGACTATTCCGTAAAAGGCAGTACAAAAGATCGGTATTTTGGTATCTTTAATGGCATCTCAATCATCGCTACCACATACGCAAGTGGAATAATTCCGGAGATAGTTAAGTACGTTGGCTATGTGTGTGCTAGTGTTATAGTGACAACCTATTTCAGTGTCGTAATGTCTGGGTATTGGGCGTTTGGCAACCAAGCTATGGGAACAGTTCTTTCCAATTTTATGGGTGTTGATAGGAAGCCTTTACTCCCTACCTGGGTTTTGCTCATGACCAACGTCTTCACTCTTGTACAAGTCTTGGCTGTCACAGTGGTTTACTTGCAACCAACAACTGAAGTGTTTGAGAAGAAATTTGCAGGCCCAAAAATGGATCAATTTTCCATCCGTAATGTTGTGTCGCTATTGATTCTCCGGTCGGTCACCATTGTGGTAGCTACATTTTTTGTTGCGATGTTACCTTTCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

261

Amino Acids

28.7

Weight (kDa)

9.07

Isoelectric Point (pI)

28.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 38 - 258 3.1e-17 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08230 AT1G08230 AT1G08230 AT1G08230 AT1G08230
fragaria_vesca FvH4_3g30140 FvH4_7g06340 FvH4_7g06350 FvH4_7g06350
malus_domestica MD02G1244800.v1.1 MD03G1133300.v1.1 MD07G1072100.v1.1 MD07G1072300.v1.1 MD11G1155800.v1.1 MD11G1156000.v1.1
prunus_persica Prupe.2G090300_v2.0.a1 Prupe.2G090500_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1
pyrus_communis pycom02g21070 pycom03g08970 pycom07g05520
rosa_chinensis RchiOBHm_Chr1g0334311 RchiOBHm_Chr1g0334341 RchiOBHm_Chr1g0334351 RchiOBHm_Chr1g0334371 RchiOBHm_Chr1g0334381 RchiOBHm_Chr1g0334431 RchiOBHm_Chr5g0055491 RchiOBHm_Chr5g0055511
rosa_laevigata RLG00000029454 RLG00000029457 RLG00000029458 RLG00000029459 RLG00000029461 RLG00000034991 RLG00000034993
rosa_multiflora Rmu_sc0001673.1_g000036 Rmu_sc0001673.1_g000040 Rmu_sc0016880.1_g000002 Rmu_ssc0000047.1_g000014 Rmu_ssc0000047.1_g000015 Rmu_ssc0000047.1_g000016 Rmu_ssc0000047.1_g000023
rosa_roxburghii Rroxscaffold_1G00024820 Rroxscaffold_1G00024850 Rroxscaffold_1G00024860 Rroxscaffold_4G00316880 Rroxscaffold_4G00316900
rosa_rugosa Rorug01G0113300.1 Rorug01G0113400 Rorug01G0113500 Rorug05G0293200 Rorug05G0293200 Rorug05G0293400.1
rosa_samantha Rh1AG138200 Rh1AG138300 Rh1AG139000 Rh1BG104900 Rh1CG130400 Rh1CG130500 Rh1CG131000 Rh1DG142700 Rh1DG142800 Rh5AG362800 Rh5AG363000 Rh5BG375000 Rh5BG375200 Rh5CG396900 Rh5CG397100 Rh5DG388300 Rh5DG388400
rosa_wichuraiana Rw0G003720 Rw0G003730 Rw0G003740 Rw1G011440 Rw1G011450 Rw5G034150 Rw5G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 517
AccIII TCCGGA 1 cut(s) 415
AclWI GGATC 1 cut(s) 696
AcsI RAATTY 2 cut(s) 126, 668
AcuI CTGAAG 2 cut(s) 30, 672
AfaI GTAC 4 cut(s) 152, 343, 431, 609
AfiI CCNNNNNNNGG 4 cut(s) 37, 517, 574, 685
AflII CTTAAG 2 cut(s) 121, 217
AjnI CCWGG 1 cut(s) 572
AjuI GAANNNNNNNTTGG 1 cut(s) 35
AleI CACNNNNGTG 1 cut(s) 743
AluBI AGCT 3 cut(s) 148, 515, 752
AluI AGCT 3 cut(s) 148, 515, 752
AlwI GGATC 1 cut(s) 696
Aor13HI TCCGGA 1 cut(s) 415
AoxI GGCC 2 cut(s) 13, 676
ApeKI GCWGC 1 cut(s) 282
ApoI RAATTY 2 cut(s) 126, 668
ArsI GACNNNNNNTTYG 2 cut(s) 35, 67
AspLEI GCGC 1 cut(s) 266
AspS9I GGNCC 2 cut(s) 55, 677
AsuHPI GGTGA 1 cut(s) 730
AvaII GGWCC 1 cut(s) 55
BbsI GAAGAC 1 cut(s) 589
BbvI GCAGC 1 cut(s) 269
BccI CCATC 3 cut(s) 128, 211, 707
BciT130I CCWGG 1 cut(s) 574
BfaI CTAG 1 cut(s) 450
BfoI RGCGCY 1 cut(s) 267
BfrI CTTAAG 2 cut(s) 121, 217
BglI GCCNNNNNGGC 1 cut(s) 21
BisI GCNGC 1 cut(s) 283
BlsI GCNGC 1 cut(s) 284
Bme1390I CCNGG 1 cut(s) 574
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 2 cut(s) 55, 677
BmrFI CCNGG 1 cut(s) 574
BmsI GCATC 1 cut(s) 384
BoxI GACNNNNGTC 1 cut(s) 593
BpiI GAAGAC 1 cut(s) 589
BsaJI CCNNGG 1 cut(s) 573
BsaWI WCCGGW 2 cut(s) 415, 729
Bsc4I CCNNNNNNNGG 4 cut(s) 37, 517, 574, 685
Bse1I ACTGG 1 cut(s) 154
BseAI TCCGGA 1 cut(s) 415
BseBI CCWGG 1 cut(s) 574
BseDI CCNNGG 1 cut(s) 573
BseGI GGATG 2 cut(s) 203, 699
BseLI CCNNNNNNNGG 4 cut(s) 37, 517, 574, 685
BseNI ACTGG 1 cut(s) 154
BseXI GCAGC 1 cut(s) 269
BsgI GTGCAG 1 cut(s) 104
Bsh1285I CGRYCG 1 cut(s) 734
BshFI GGCC 2 cut(s) 15, 678
BsiEI CGRYCG 1 cut(s) 734
BsiSI CCGG 2 cut(s) 416, 730
BslI CCNNNNNNNGG 4 cut(s) 37, 517, 574, 685
BsnI GGCC 2 cut(s) 15, 678
Bsp13I TCCGGA 1 cut(s) 415
Bsp1407I TGTACA 1 cut(s) 607
Bsp143I GATC 2 cut(s) 349, 688
BspANI GGCC 2 cut(s) 15, 678
BspEI TCCGGA 1 cut(s) 415
BspHI TCATGA 1 cut(s) 585
BspPI GGATC 1 cut(s) 696
BspTI CTTAAG 2 cut(s) 121, 217
BsrGI TGTACA 1 cut(s) 607
BsrI ACTGG 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 573
BssMI GATC 2 cut(s) 349, 688
Bst2UI CCWGG 1 cut(s) 574
Bst4CI ACNGT 2 cut(s) 526, 628
BstAFI CTTAAG 2 cut(s) 121, 217
BstAUI TGTACA 1 cut(s) 607
BstC8I GCNNGC 4 cut(s) 96, 268, 280, 676
BstEII GGTNACC 1 cut(s) 736
BstF5I GGATG 2 cut(s) 203, 699
BstH2I RGCGCY 1 cut(s) 267
BstHHI GCGC 1 cut(s) 266
BstKTI GATC 2 cut(s) 352, 691
BstMBI GATC 2 cut(s) 349, 688
BstMCI CGRYCG 1 cut(s) 734
BstMWI GCNNNNNNNGC 3 cut(s) 21, 91, 263
BstNI CCWGG 1 cut(s) 574
BstPAI GACNNNNGTC 1 cut(s) 593
BstPI GGTNACC 1 cut(s) 736
BstSCI CCNGG 1 cut(s) 572
BstV1I GCAGC 1 cut(s) 269
BstV2I GAAGAC 1 cut(s) 589
BstXI CCANNNNNNTGG 1 cut(s) 541
BsuRI GGCC 2 cut(s) 15, 678
BtgZI GCGATG 3 cut(s) 75, 370, 782
BtsCI GGATG 2 cut(s) 203, 699
BtsI GCAGTG 1 cut(s) 273
BtsIMutI CAGTG 3 cut(s) 273, 481, 633
Cac8I GCNNGC 4 cut(s) 96, 268, 280, 676
CciI TCATGA 1 cut(s) 585
CfoI GCGC 1 cut(s) 266
Cfr13I GGNCC 2 cut(s) 55, 677
CseI GACGC 2 cut(s) 166, 259
Csp6I GTAC 4 cut(s) 151, 342, 430, 608
CviAII CATG 2 cut(s) 35, 586
CviQI GTAC 4 cut(s) 151, 342, 430, 608
DpnI GATC 2 cut(s) 351, 690
DpnII GATC 2 cut(s) 349, 688
Eco147I AGGCCT 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 55
Eco57I CTGAAG 2 cut(s) 30, 672
Eco91I GGTNACC 1 cut(s) 736
EcoO65I GGTNACC 1 cut(s) 736
EcoRI GAATTC 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 572
FaeI CATG 2 cut(s) 38, 589
FatI CATG 2 cut(s) 34, 585
Fnu4HI GCNGC 1 cut(s) 283
FokI GGATG 2 cut(s) 190, 686
Fsp4HI GCNGC 1 cut(s) 283
FspBI CTAG 1 cut(s) 450
GlaI GCGC 1 cut(s) 265
GluI GCNGC 1 cut(s) 283
HaeII RGCGCY 1 cut(s) 267
HaeIII GGCC 2 cut(s) 15, 678
HapII CCGG 2 cut(s) 416, 730
HgaI GACGC 2 cut(s) 166, 259
HhaI GCGC 1 cut(s) 266
Hin1II CATG 2 cut(s) 38, 589
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HinfI GANTC 1 cut(s) 724
HpaII CCGG 2 cut(s) 416, 730
HphI GGTGA 1 cut(s) 730
Hpy166II GTNNAC 1 cut(s) 634
Hpy188I TCNGA 3 cut(s) 10, 173, 785
Hpy188III TCNNGA 3 cut(s) 131, 416, 586
Hpy8I GTNNAC 1 cut(s) 634
HpyAV CCTTC 3 cut(s) 5, 41, 217
HpyCH4III ACNGT 2 cut(s) 526, 628
HpyCH4IV ACGT 2 cut(s) 432, 594
HpyCH4V TGCA 7 cut(s) 63, 85, 98, 257, 285, 640, 674
HpyF10VI GCNNNNNNNGC 3 cut(s) 21, 91, 263
HpySE526I ACGT 2 cut(s) 432, 594
Hsp92II CATG 2 cut(s) 38, 589
HspAI GCGC 1 cut(s) 264
Kpn2I TCCGGA 1 cut(s) 415
Kzo9I GATC 2 cut(s) 349, 688
LmnI GCTCC 1 cut(s) 316
Lsp1109I GCAGC 1 cut(s) 269
LweI GCATC 1 cut(s) 384
MaeI CTAG 1 cut(s) 450
MaeII ACGT 2 cut(s) 432, 594
MaeIII GTNAC 6 cut(s) 178, 271, 460, 622, 736, 771
MalI GATC 2 cut(s) 351, 690
MboI GATC 2 cut(s) 349, 688
MboII GAAGA 3 cut(s) 589, 676, 772
MluCI AATT 6 cut(s) 64, 126, 411, 535, 668, 692
MnlI CCTC 3 cut(s) 68, 103, 242
MroI TCCGGA 1 cut(s) 415
MseI TTAA 5 cut(s) 122, 218, 228, 369, 426
MslI CAYNNNNRTG 1 cut(s) 743
MspCI CTTAAG 2 cut(s) 121, 217
MspI CCGG 2 cut(s) 416, 730
MspR9I CCNGG 1 cut(s) 574
MvaI CCWGG 1 cut(s) 574
MwoI GCNNNNNNNGC 3 cut(s) 21, 91, 263
NdeII GATC 2 cut(s) 349, 688
NlaIII CATG 2 cut(s) 38, 589
NmuCI GTSAC 5 cut(s) 178, 271, 460, 622, 736
OliI CACNNNNGTG 1 cut(s) 743
PagI TCATGA 1 cut(s) 585
PceI AGGCCT 1 cut(s) 15
PfeI GAWTC 1 cut(s) 724
PflMI CCANNNNNTGG 1 cut(s) 517
PkrI GCNGC 1 cut(s) 284
PshAI GACNNNNGTC 1 cut(s) 593
Psp6I CCWGG 1 cut(s) 572
PspEI GGTNACC 1 cut(s) 736
PspGI CCWGG 1 cut(s) 572
PspPI GGNCC 2 cut(s) 55, 677
RsaI GTAC 4 cut(s) 152, 343, 431, 609
RsaNI GTAC 4 cut(s) 151, 342, 430, 608
RseI CAYNNNNRTG 1 cut(s) 743
SaqAI TTAA 5 cut(s) 122, 218, 228, 369, 426
SatI GCNGC 1 cut(s) 283
Sau3AI GATC 2 cut(s) 349, 688
Sau96I GGNCC 2 cut(s) 55, 677
ScrFI CCNGG 1 cut(s) 574
SetI ASST 9 cut(s) 150, 234, 435, 470, 517, 575, 597, 754, 778
SfaNI GCATC 1 cut(s) 384
SinI GGWCC 1 cut(s) 55
SmiMI CAYNNNNRTG 1 cut(s) 743
SmlI CTYRAG 2 cut(s) 121, 217
SmoI CTYRAG 2 cut(s) 121, 217
Sse9I AATT 6 cut(s) 64, 126, 411, 535, 668, 692
SseBI AGGCCT 1 cut(s) 15
SspI AATATT 1 cut(s) 46
SspMI CTAG 1 cut(s) 450
StuI AGGCCT 1 cut(s) 15
StyD4I CCNGG 1 cut(s) 572
TaaI ACNGT 2 cut(s) 526, 628
TaiI ACGT 2 cut(s) 435, 597
TaqII GACCGA 2 cut(s) 43, 724
TasI AATT 6 cut(s) 64, 126, 411, 535, 668, 692
TatI WGTACW 2 cut(s) 341, 607
TfiI GAWTC 1 cut(s) 724
Tru1I TTAA 5 cut(s) 122, 218, 228, 369, 426
Tru9I TTAA 5 cut(s) 122, 218, 228, 369, 426
TscAI CASTG 3 cut(s) 280, 481, 633
TseFI GTSAC 5 cut(s) 178, 271, 460, 622, 736
TseI GCWGC 1 cut(s) 282
Tsp45I GTSAC 5 cut(s) 178, 271, 460, 622, 736
TspDTI ATGAA 2 cut(s) 23, 158
TspGWI ACGGA 2 cut(s) 319, 692
TspRI CASTG 3 cut(s) 280, 481, 633
Van91I CCANNNNNTGG 1 cut(s) 517
Vha464I CTTAAG 2 cut(s) 121, 217
VpaK11BI GGWCC 1 cut(s) 55
XapI RAATTY 2 cut(s) 126, 668
XspI CTAG 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.