Rh1CG130500

GABA transporter 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000597
Physical Location & Seq
Forward (+)
28734028 .. 28737719
3692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG130500.1

Sequence Viewer

Length: 1194 bp
ATGGCCTTGCTCGGCTGGGTTGGGGGAGTCATTTGTGTAGCCTTGGCAGGTTTGGTCACCTTCTACTCCTACAATCTTCTCTCTTTAGTTCTTGAGCACCAAGAAAAGCTTGGGCATCGTCAACTTCGCTTTCGAGACATGGCCAAAGACATTTTAGGTCCTGCATGGGGCAAATATTTTGTCGGTCCTCTGCAATTTTGGATATGCTATGGTGCAGTCATCGCTTGCACATTACTTGGAGGGCAGAGCCTTAAGTTTATTTACTTGCTCTCTAATCCAGATGGAACAATGAAGCTGTACCAGTTTATTATTATGTTCGGAGGCGTCACACTCTTTTTGGCTCAAATGCCATCCTTCCACTCCTTAAGGCATATTAACCTCGTTTCTCTAATCCTTTGTCTTGCATATAGCGCCTGCGTCACTGCTGCAGGCTGCATATACGTTGGGCATACGAACAATGCTCCTGTAAAGGACTATTCCATAAAAGGAAGTACAAAAGATCGGTATTTTGGTATCTTTAATGGCATCTCAATCATCGCTACCACATACGCAAGTGGAATAATTCCGGAGATACAGGCAACTTTGGCACCTCCAATAAAAGGCAAGATGTTCAAAGGGCTATGTGTGTGCTATAGTGTGATAGTGACAACCTATTTCAGTGTCGCAATGTCTGGGTATTGGGCGTTTGGCAACCAAGCTATGGGAACAGTTCTTTCCAATTTTATGGGTGTTGATGGGAAGCATTTACTCCCTACCTGGTTTTTGCTCATGACCAACGTCTTCACTCTTGTGCAAGTCTTGGCTGTCACAGTGGTTTACTTGCAACCAACAAATGAAGTGTTTGAGAAGAAATTTGCAGACCCAAAAATGGATCAATTTTCCATCCGTAATGTTGTGCCGCGATTGATTCTCCGGTCGATCACCGTCGTGGTAGCTACATTTTTTGCTGCGATGTTACCTTTCTTCGGAGATATCATGGCATTGTTTGGGGCATTTGGATGCATTCCTCTAGATTTCATTTTGCCAATGATATTCTACAATGTGGCTTTCAAGCCCTCAAAGCAAAGCCTCATATTTTGGGTTAACACATTGATAGCAGGAGTATCGTTCTTGTTGGTTGGGGTAGGGGCTGTAGCATCTGTTAGACAGATTGTTCTTGATGCTAAAACATATCACCTATTTGCTAACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

397

Amino Acids

43.76

Weight (kDa)

9.18

Isoelectric Point (pI)

26.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 1 - 379 3.8e-58 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08230 AT1G08230 AT1G08230 AT1G08230 AT1G08230
fragaria_vesca FvH4_3g30140 FvH4_7g06340 FvH4_7g06350 FvH4_7g06350
malus_domestica MD02G1244800.v1.1 MD03G1133300.v1.1 MD07G1072100.v1.1 MD07G1072300.v1.1 MD11G1155800.v1.1 MD11G1156000.v1.1
prunus_persica Prupe.2G090300_v2.0.a1 Prupe.2G090500_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1
pyrus_communis pycom02g21070 pycom03g08970 pycom07g05520
rosa_chinensis RchiOBHm_Chr1g0334311 RchiOBHm_Chr1g0334341 RchiOBHm_Chr1g0334351 RchiOBHm_Chr1g0334371 RchiOBHm_Chr1g0334381 RchiOBHm_Chr1g0334431 RchiOBHm_Chr5g0055491 RchiOBHm_Chr5g0055511
rosa_laevigata RLG00000029454 RLG00000029457 RLG00000029458 RLG00000029459 RLG00000029461 RLG00000034991 RLG00000034993
rosa_multiflora Rmu_sc0001673.1_g000036 Rmu_sc0001673.1_g000040 Rmu_sc0016880.1_g000002 Rmu_ssc0000047.1_g000014 Rmu_ssc0000047.1_g000015 Rmu_ssc0000047.1_g000016 Rmu_ssc0000047.1_g000023
rosa_roxburghii Rroxscaffold_1G00024820 Rroxscaffold_1G00024850 Rroxscaffold_1G00024860 Rroxscaffold_4G00316880 Rroxscaffold_4G00316900
rosa_rugosa Rorug01G0113300.1 Rorug01G0113400 Rorug01G0113500 Rorug05G0293200 Rorug05G0293200 Rorug05G0293400.1
rosa_samantha Rh1AG138200 Rh1AG138300 Rh1AG139000 Rh1BG104900 Rh1CG130400 Rh1CG130500 Rh1CG131000 Rh1DG142700 Rh1DG142800 Rh5AG362800 Rh5AG363000 Rh5BG375000 Rh5BG375200 Rh5CG396900 Rh5CG397100 Rh5DG388300 Rh5DG388400
rosa_wichuraiana Rw0G003720 Rw0G003730 Rw0G003740 Rw1G011440 Rw1G011450 Rw5G034150 Rw5G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 38
AccB1I GGYRCC 1 cut(s) 586
AccB7I CCANNNNNTGG 1 cut(s) 700
AccII CGCG 1 cut(s) 901
AccIII TCCGGA 1 cut(s) 565
AciI CCGC 1 cut(s) 899
AclWI GGATC 1 cut(s) 879
AcoI YGGCCR 1 cut(s) 141
AcsI RAATTY 1 cut(s) 851
AcyI GRCGYC 1 cut(s) 324
AfaI GTAC 2 cut(s) 299, 493
AfiI CCNNNNNNNGG 5 cut(s) 167, 599, 700, 868, 965
AflII CTTAAG 2 cut(s) 251, 364
AflIII ACRYGT 1 cut(s) 1188
AgsI TTSAA 2 cut(s) 613, 1051
AjnI CCWGG 1 cut(s) 755
AleI CACNNNNGTG 2 cut(s) 788, 926
AluBI AGCT 4 cut(s) 109, 295, 698, 935
AluI AGCT 4 cut(s) 109, 295, 698, 935
Alw21I GWGCWC 1 cut(s) 99
Alw26I GTCTC 1 cut(s) 129
AlwI GGATC 1 cut(s) 879
Aor13HI TCCGGA 1 cut(s) 565
AoxI GGCC 2 cut(s) 3, 141
ApeKI GCWGC 3 cut(s) 425, 432, 947
ApoI RAATTY 1 cut(s) 851
ArsI GACNNNNNNTTYG 2 cut(s) 165, 197
AspLEI GCGC 1 cut(s) 413
AspS9I GGNCC 2 cut(s) 158, 185
AsuHPI GGTGA 3 cut(s) 49, 913, 1166
AvaII GGWCC 2 cut(s) 158, 185
BalI TGGCCA 1 cut(s) 143
BanI GGYRCC 1 cut(s) 586
BbsI GAAGAC 1 cut(s) 772
Bbv12I GWGCWC 1 cut(s) 99
BbvI GCAGC 3 cut(s) 412, 419, 934
BccI CCATC 4 cut(s) 275, 358, 728, 890
BcgI CGANNNNNNTGC 2 cut(s) 1086, 1120
BciT130I CCWGG 1 cut(s) 757
BcoDI GTCTC 1 cut(s) 129
BfaI CTAG 1 cut(s) 1010
BfmI CTRYAG 3 cut(s) 426, 631, 1131
BfoI RGCGCY 1 cut(s) 414
BfrI CTTAAG 2 cut(s) 251, 364
BfuAI ACCTGC 1 cut(s) 38
BisI GCNGC 4 cut(s) 426, 433, 899, 948
BlsI GCNGC 4 cut(s) 427, 434, 900, 949
Bme1390I CCNGG 1 cut(s) 757
Bme18I GGWCC 2 cut(s) 158, 185
BmgT120I GGNCC 2 cut(s) 158, 185
BmiI GGNNCC 1 cut(s) 588
BmrFI CCNGG 1 cut(s) 757
BmsI GCATC 5 cut(s) 124, 534, 989, 1145, 1150
BoxI GACNNNNGTC 1 cut(s) 776
BpiI GAAGAC 1 cut(s) 772
BpuEI CTTGAG 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 324
BsaJI CCNNGG 1 cut(s) 42
BsaWI WCCGGW 2 cut(s) 565, 912
Bsc4I CCNNNNNNNGG 5 cut(s) 167, 599, 700, 868, 965
Bse1I ACTGG 1 cut(s) 301
Bse3DI GCAATG 1 cut(s) 672
BseAI TCCGGA 1 cut(s) 565
BseBI CCWGG 1 cut(s) 757
BseDI CCNNGG 1 cut(s) 42
BseGI GGATG 3 cut(s) 350, 882, 1004
BseLI CCNNNNNNNGG 5 cut(s) 167, 599, 700, 868, 965
BseMI GCAATG 1 cut(s) 672
BseNI ACTGG 1 cut(s) 301
BseXI GCAGC 3 cut(s) 412, 419, 934
BseYI CCCAGC 1 cut(s) 15
BsgI GTGCAG 1 cut(s) 234
Bsh1236I CGCG 1 cut(s) 901
Bsh1285I CGRYCG 1 cut(s) 917
BshFI GGCC 2 cut(s) 5, 143
BshNI GGYRCC 1 cut(s) 586
BsiEI CGRYCG 1 cut(s) 917
BsiHKAI GWGCWC 1 cut(s) 99
BsiSI CCGG 2 cut(s) 566, 913
BslI CCNNNNNNNGG 5 cut(s) 167, 599, 700, 868, 965
BsmAI GTCTC 1 cut(s) 129
BsmI GAATGC 1 cut(s) 1002
BsnI GGCC 2 cut(s) 5, 143
Bsp1286I GDGCHC 1 cut(s) 99
Bsp13I TCCGGA 1 cut(s) 565
Bsp143I GATC 3 cut(s) 499, 871, 918
BspACI CCGC 1 cut(s) 899
BspANI GGCC 2 cut(s) 5, 143
BspEI TCCGGA 1 cut(s) 565
BspFNI CGCG 1 cut(s) 901
BspHI TCATGA 1 cut(s) 768
BspLI GGNNCC 1 cut(s) 588
BspMAI CTGCAG 1 cut(s) 430
BspMI ACCTGC 1 cut(s) 38
BspPI GGATC 1 cut(s) 879
BspT107I GGYRCC 1 cut(s) 586
BspTI CTTAAG 2 cut(s) 251, 364
BsrDI GCAATG 1 cut(s) 672
BsrI ACTGG 1 cut(s) 301
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 3 cut(s) 499, 871, 918
BssNI GRCGYC 1 cut(s) 324
BssT1I CCWWGG 1 cut(s) 42
Bst2UI CCWGG 1 cut(s) 757
Bst4CI ACNGT 3 cut(s) 709, 811, 925
BstACI GRCGYC 1 cut(s) 324
BstAFI CTTAAG 2 cut(s) 251, 364
BstC8I GCNNGC 3 cut(s) 226, 415, 430
BstEII GGTNACC 1 cut(s) 55
BstF5I GGATG 3 cut(s) 350, 882, 1004
BstFNI CGCG 1 cut(s) 901
BstH2I RGCGCY 1 cut(s) 414
BstHHI GCGC 1 cut(s) 413
BstKTI GATC 3 cut(s) 502, 874, 921
BstMAI GTCTC 1 cut(s) 129
BstMBI GATC 3 cut(s) 499, 871, 918
BstMCI CGRYCG 1 cut(s) 917
BstMWI GCNNNNNNNGC 4 cut(s) 221, 410, 584, 1060
BstNI CCWGG 1 cut(s) 757
BstNSI RCATGY 1 cut(s) 1192
BstPAI GACNNNNGTC 1 cut(s) 776
BstPI GGTNACC 1 cut(s) 55
BstSCI CCNGG 1 cut(s) 755
BstSFI CTRYAG 3 cut(s) 426, 631, 1131
BstUI CGCG 1 cut(s) 901
BstV1I GCAGC 3 cut(s) 412, 419, 934
BstV2I GAAGAC 1 cut(s) 772
BstXI CCANNNNNNTGG 1 cut(s) 724
BsuRI GGCC 2 cut(s) 5, 143
BtgZI GCGATG 3 cut(s) 205, 520, 965
BtsCI GGATG 3 cut(s) 350, 882, 1004
BtsI GCAGTG 1 cut(s) 420
BtsIMutI CAGTG 3 cut(s) 420, 664, 816
BveI ACCTGC 1 cut(s) 38
Cac8I GCNNGC 3 cut(s) 226, 415, 430
CciI TCATGA 1 cut(s) 768
CfoI GCGC 1 cut(s) 413
Cfr13I GGNCC 2 cut(s) 158, 185
CseI GACGC 2 cut(s) 313, 406
CsiI ACCWGGT 1 cut(s) 755
Csp6I GTAC 2 cut(s) 298, 492
CviAII CATG 5 cut(s) 139, 165, 769, 976, 1189
CviQI GTAC 2 cut(s) 298, 492
DpnI GATC 3 cut(s) 501, 873, 920
DpnII GATC 3 cut(s) 499, 871, 918
EaeI YGGCCR 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 42
Eco32I GATATC 1 cut(s) 973
Eco47I GGWCC 2 cut(s) 158, 185
Eco91I GGTNACC 1 cut(s) 55
EcoO109I RGGNCCY 1 cut(s) 158
EcoO65I GGTNACC 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 755
EcoRV GATATC 1 cut(s) 973
EcoT14I CCWWGG 1 cut(s) 42
EcoT22I ATGCAT 1 cut(s) 1004
ErhI CCWWGG 1 cut(s) 42
FaeI CATG 5 cut(s) 142, 168, 772, 979, 1192
FalI AAGNNNNNCTT 2 cut(s) 93, 125
FatI CATG 5 cut(s) 138, 164, 768, 975, 1188
Fnu4HI GCNGC 4 cut(s) 426, 433, 899, 948
FokI GGATG 3 cut(s) 337, 869, 1011
Fsp4HI GCNGC 4 cut(s) 426, 433, 899, 948
FspBI CTAG 1 cut(s) 1010
GlaI GCGC 1 cut(s) 412
GluI GCNGC 4 cut(s) 426, 433, 899, 948
GsaI CCCAGC 1 cut(s) 19
HaeII RGCGCY 1 cut(s) 414
HaeIII GGCC 2 cut(s) 5, 143
HapII CCGG 2 cut(s) 566, 913
HgaI GACGC 2 cut(s) 313, 406
HhaI GCGC 1 cut(s) 413
Hin1I GRCGYC 1 cut(s) 324
Hin1II CATG 5 cut(s) 142, 168, 772, 979, 1192
Hin6I GCGC 1 cut(s) 411
HinP1I GCGC 1 cut(s) 411
HincII GTYRAC 2 cut(s) 122, 1084
HindII GTYRAC 2 cut(s) 122, 1084
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 2 cut(s) 27, 907
HpaI GTTAAC 1 cut(s) 1084
HpaII CCGG 2 cut(s) 566, 913
HphI GGTGA 3 cut(s) 49, 913, 1166
Hpy166II GTNNAC 3 cut(s) 122, 817, 1084
Hpy188I TCNGA 2 cut(s) 320, 968
Hpy188III TCNNGA 7 cut(s) 92, 134, 278, 566, 769, 1010, 1157
Hpy8I GTNNAC 3 cut(s) 122, 817, 1084
Hpy99I CGWCG 1 cut(s) 929
HpyAV CCTTC 2 cut(s) 70, 364
HpyCH4III ACNGT 3 cut(s) 709, 811, 925
HpyCH4IV ACGT 2 cut(s) 441, 777
HpyF10VI GCNNNNNNNGC 4 cut(s) 221, 410, 584, 1060
HpySE526I ACGT 2 cut(s) 441, 777
Hsp92I GRCGYC 1 cut(s) 324
Hsp92II CATG 5 cut(s) 142, 168, 772, 979, 1192
HspAI GCGC 1 cut(s) 411
Kpn2I TCCGGA 1 cut(s) 565
KspAI GTTAAC 1 cut(s) 1084
Kzo9I GATC 3 cut(s) 499, 871, 918
LmnI GCTCC 1 cut(s) 466
Lsp1109I GCAGC 3 cut(s) 412, 419, 934
LweI GCATC 5 cut(s) 124, 534, 989, 1145, 1150
MabI ACCWGGT 1 cut(s) 755
MaeI CTAG 1 cut(s) 1010
MaeII ACGT 2 cut(s) 441, 777
MaeIII GTNAC 6 cut(s) 55, 325, 418, 643, 805, 954
MalI GATC 3 cut(s) 501, 873, 920
MboI GATC 3 cut(s) 499, 871, 918
MboII GAAGA 4 cut(s) 68, 772, 859, 955
MhlI GDGCHC 1 cut(s) 99
MlsI TGGCCA 1 cut(s) 143
MluCI AATT 5 cut(s) 194, 561, 718, 851, 875
MluNI TGGCCA 1 cut(s) 143
MlyI GAGTC 1 cut(s) 36
MnlI CCTC 8 cut(s) 198, 233, 314, 389, 600, 1017, 1066, 1079
Mox20I TGGCCA 1 cut(s) 143
Mph1103I ATGCAT 1 cut(s) 1004
MroI TCCGGA 1 cut(s) 565
MscI TGGCCA 1 cut(s) 143
MseI TTAA 5 cut(s) 252, 365, 375, 519, 1083
MslI CAYNNNNRTG 3 cut(s) 788, 926, 997
Msp20I TGGCCA 1 cut(s) 143
MspCI CTTAAG 2 cut(s) 251, 364
MspI CCGG 2 cut(s) 566, 913
MspR9I CCNGG 1 cut(s) 757
Mva1269I GAATGC 1 cut(s) 1002
MvaI CCWGG 1 cut(s) 757
MvnI CGCG 1 cut(s) 901
MwoI GCNNNNNNNGC 4 cut(s) 221, 410, 584, 1060
NdeII GATC 3 cut(s) 499, 871, 918
NlaIII CATG 5 cut(s) 142, 168, 772, 979, 1192
NlaIV GGNNCC 1 cut(s) 588
NmuCI GTSAC 5 cut(s) 55, 325, 418, 643, 805
NsiI ATGCAT 1 cut(s) 1004
NspI RCATGY 1 cut(s) 1192
OliI CACNNNNGTG 2 cut(s) 788, 926
PagI TCATGA 1 cut(s) 768
PciI ACATGT 1 cut(s) 1188
PctI GAATGC 1 cut(s) 1002
PfeI GAWTC 1 cut(s) 907
PflMI CCANNNNNTGG 1 cut(s) 700
PkrI GCNGC 4 cut(s) 427, 434, 900, 949
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
PpuMI RGGWCCY 1 cut(s) 158
PscI ACATGT 1 cut(s) 1188
PshAI GACNNNNGTC 1 cut(s) 776
Psp5II RGGWCCY 1 cut(s) 158
Psp6I CCWGG 1 cut(s) 755
PspEI GGTNACC 1 cut(s) 55
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 1 cut(s) 755
PspN4I GGNNCC 1 cut(s) 588
PspPI GGNCC 2 cut(s) 158, 185
PspPPI RGGWCCY 1 cut(s) 158
PstI CTGCAG 1 cut(s) 430
RsaI GTAC 2 cut(s) 299, 493
RsaNI GTAC 2 cut(s) 298, 492
RseI CAYNNNNRTG 3 cut(s) 788, 926, 997
SaqAI TTAA 5 cut(s) 252, 365, 375, 519, 1083
SatI GCNGC 4 cut(s) 426, 433, 899, 948
Sau3AI GATC 3 cut(s) 499, 871, 918
Sau96I GGNCC 2 cut(s) 158, 185
SchI GAGTC 1 cut(s) 36
ScrFI CCNGG 1 cut(s) 757
SduI GDGCHC 1 cut(s) 99
SexAI ACCWGGT 1 cut(s) 755
SfaNI GCATC 5 cut(s) 124, 534, 989, 1145, 1150
SfcI CTRYAG 3 cut(s) 426, 631, 1131
SinI GGWCC 2 cut(s) 158, 185
SmiMI CAYNNNNRTG 3 cut(s) 788, 926, 997
SmlI CTYRAG 3 cut(s) 92, 251, 364
SmoI CTYRAG 3 cut(s) 92, 251, 364
Sse9I AATT 5 cut(s) 194, 561, 718, 851, 875
SsiI CCGC 1 cut(s) 899
SspI AATATT 1 cut(s) 176
SspMI CTAG 1 cut(s) 1010
StyD4I CCNGG 1 cut(s) 755
StyI CCWWGG 1 cut(s) 42
TaaI ACNGT 3 cut(s) 709, 811, 925
TaiI ACGT 2 cut(s) 444, 780
TaqI TCGA 2 cut(s) 133, 917
TaqII GACCGA 1 cut(s) 173
TasI AATT 5 cut(s) 194, 561, 718, 851, 875
TatI WGTACW 1 cut(s) 491
TauI GCSGC 1 cut(s) 901
TfiI GAWTC 1 cut(s) 907
Tru1I TTAA 5 cut(s) 252, 365, 375, 519, 1083
Tru9I TTAA 5 cut(s) 252, 365, 375, 519, 1083
TscAI CASTG 3 cut(s) 427, 664, 816
TseFI GTSAC 5 cut(s) 55, 325, 418, 643, 805
TseI GCWGC 3 cut(s) 425, 432, 947
Tsp45I GTSAC 5 cut(s) 55, 325, 418, 643, 805
TspDTI ATGAA 3 cut(s) 305, 849, 1006
TspGWI ACGGA 1 cut(s) 875
TspRI CASTG 3 cut(s) 427, 664, 816
Van91I CCANNNNNTGG 1 cut(s) 700
Vha464I CTTAAG 2 cut(s) 251, 364
VpaK11BI GGWCC 2 cut(s) 158, 185
XapI RAATTY 1 cut(s) 851
XbaI TCTAGA 1 cut(s) 1009
XceI RCATGY 1 cut(s) 1192
XcmI CCANNNNNNNNNTGG 1 cut(s) 107
XspI CTAG 1 cut(s) 1010
Zsp2I ATGCAT 1 cut(s) 1004
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.