RchiOBHm_Chr1g0334431

GABA transporter 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000597
Physical Location & Seq
Forward (+)
26642954 .. 26643543
590 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56315

Sequence Viewer

Length: 471 bp
ATGTTAAAGGGATTATGTGTATGTTATGCTGTTGTACTTTCAATATTTTTCAGTGCTGCTATATCGGGATATTGGGCATTTGGTAATCAGGCCAAAGGTACAATTTTACTCAACTTTCTAGTTGATGAGAAGCCTCTGTTGCCGACTTGGGTTCTCTTGAGGACTAATGTCTTCACCTTCTTGCAAGTAGCAGCTGTTAGTGTGGTTTACTCACAACCAACAAATGAAGTACTGGAACGCAAGTTTGTAAACGCCGAGATTGATCAGTTCTCTGTTCGAAATGTAGTACCAAAGTTGGTTTATCGATCATTGTCTGTCGTGATAGCCACAACAGTTGCAGCTATGTGTCCTTTCTTTGGAGACATCAATGCTTTAATCGGAGCATTTGGTTGCATTCCTCTCGACTTCATTTTGCCAATGGTGTTCCACAATGATGTATTCAAGCCATCCAAGTACAGCCTTCTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

156

Amino Acids

17.33

Weight (kDa)

8.37

Isoelectric Point (pI)

15.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 3 - 153 1.3e-24 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08230 AT1G08230 AT1G08230 AT1G08230 AT1G08230
fragaria_vesca FvH4_3g30140 FvH4_7g06340 FvH4_7g06350 FvH4_7g06350
malus_domestica MD02G1244800.v1.1 MD03G1133300.v1.1 MD07G1072100.v1.1 MD07G1072300.v1.1 MD11G1155800.v1.1 MD11G1156000.v1.1
prunus_persica Prupe.2G090300_v2.0.a1 Prupe.2G090500_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1
pyrus_communis pycom02g21070 pycom03g08970 pycom07g05520
rosa_chinensis RchiOBHm_Chr1g0334311 RchiOBHm_Chr1g0334341 RchiOBHm_Chr1g0334351 RchiOBHm_Chr1g0334371 RchiOBHm_Chr1g0334381 RchiOBHm_Chr1g0334431 RchiOBHm_Chr5g0055491 RchiOBHm_Chr5g0055511
rosa_laevigata RLG00000029454 RLG00000029457 RLG00000029458 RLG00000029459 RLG00000029461 RLG00000034991 RLG00000034993
rosa_multiflora Rmu_sc0001673.1_g000036 Rmu_sc0001673.1_g000040 Rmu_sc0016880.1_g000002 Rmu_ssc0000047.1_g000014 Rmu_ssc0000047.1_g000015 Rmu_ssc0000047.1_g000016 Rmu_ssc0000047.1_g000023
rosa_roxburghii Rroxscaffold_1G00024820 Rroxscaffold_1G00024850 Rroxscaffold_1G00024860 Rroxscaffold_4G00316880 Rroxscaffold_4G00316900
rosa_rugosa Rorug01G0113300.1 Rorug01G0113400 Rorug01G0113500 Rorug05G0293200 Rorug05G0293200 Rorug05G0293400.1
rosa_samantha Rh1AG138200 Rh1AG138300 Rh1AG139000 Rh1BG104900 Rh1CG130400 Rh1CG130500 Rh1CG131000 Rh1DG142700 Rh1DG142800 Rh5AG362800 Rh5AG363000 Rh5BG375000 Rh5BG375200 Rh5CG396900 Rh5CG397100 Rh5DG388300 Rh5DG388400
rosa_wichuraiana Rw0G003720 Rw0G003730 Rw0G003740 Rw1G011440 Rw1G011450 Rw5G034150 Rw5G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 5 cut(s) 36, 100, 231, 288, 455
AfiI CCNNNNNNNGG 1 cut(s) 356
AgsI TTSAA 2 cut(s) 42, 442
AluBI AGCT 2 cut(s) 194, 341
AluI AGCT 2 cut(s) 194, 341
Alw26I GTCTC 1 cut(s) 354
AoxI GGCC 1 cut(s) 90
ApeKI GCWGC 3 cut(s) 56, 191, 338
AsuHPI GGTGA 1 cut(s) 166
AsuII TTCGAA 1 cut(s) 277
BbsI GAAGAC 1 cut(s) 163
BbvI GCAGC 3 cut(s) 43, 203, 350
BccI CCATC 1 cut(s) 454
BcgI CGANNNNNNTGC 2 cut(s) 382, 416
BclI TGATCA 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 354
BfaI CTAG 1 cut(s) 119
BisI GCNGC 3 cut(s) 57, 192, 339
BlsI GCNGC 3 cut(s) 58, 193, 340
BmcAI AGTACT 1 cut(s) 231
BoxI GACNNNNGTC 1 cut(s) 167
BpiI GAAGAC 1 cut(s) 163
Bpu14I TTCGAA 1 cut(s) 277
BpuEI CTTGAG 1 cut(s) 178
Bsa29I ATCGAT 1 cut(s) 304
Bsc4I CCNNNNNNNGG 1 cut(s) 356
Bse1I ACTGG 1 cut(s) 237
BseCI ATCGAT 1 cut(s) 304
BseGI GGATG 1 cut(s) 446
BseLI CCNNNNNNNGG 1 cut(s) 356
BseNI ACTGG 1 cut(s) 237
BseXI GCAGC 3 cut(s) 43, 203, 350
BshFI GGCC 1 cut(s) 92
BshVI ATCGAT 1 cut(s) 304
BslI CCNNNNNNNGG 1 cut(s) 356
BsmAI GTCTC 1 cut(s) 354
BsmI GAATGC 1 cut(s) 393
BsnI GGCC 1 cut(s) 92
Bsp119I TTCGAA 1 cut(s) 277
Bsp143I GATC 2 cut(s) 262, 305
BspANI GGCC 1 cut(s) 92
BspDI ATCGAT 1 cut(s) 304
BspT104I TTCGAA 1 cut(s) 277
BsrI ACTGG 1 cut(s) 237
BssMI GATC 2 cut(s) 262, 305
Bst4CI ACNGT 1 cut(s) 334
BstBI TTCGAA 1 cut(s) 277
BstF5I GGATG 1 cut(s) 446
BstKTI GATC 2 cut(s) 265, 308
BstMAI GTCTC 1 cut(s) 354
BstMBI GATC 2 cut(s) 262, 305
BstMWI GCNNNNNNNGC 1 cut(s) 139
BstPAI GACNNNNGTC 1 cut(s) 167
BstV1I GCAGC 3 cut(s) 43, 203, 350
BstV2I GAAGAC 1 cut(s) 163
Bsu15I ATCGAT 1 cut(s) 304
BsuRI GGCC 1 cut(s) 92
BsuTUI ATCGAT 1 cut(s) 304
BtsCI GGATG 1 cut(s) 446
BtsIMutI CAGTG 1 cut(s) 58
ClaI ATCGAT 1 cut(s) 304
Csp6I GTAC 5 cut(s) 35, 99, 230, 287, 454
CspCI CAANNNNNGTGG 2 cut(s) 316, 351
CviJI RGCY 7 cut(s) 92, 133, 194, 326, 341, 445, 459
CviKI_1 RGCY 7 cut(s) 92, 133, 194, 326, 341, 445, 459
CviQI GTAC 5 cut(s) 35, 99, 230, 287, 454
DpnI GATC 2 cut(s) 264, 307
DpnII GATC 2 cut(s) 262, 305
FaiI YATR 5 cut(s) 16, 22, 27, 62, 344
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 3 cut(s) 57, 192, 339
FokI GGATG 1 cut(s) 433
Fsp4HI GCNGC 3 cut(s) 57, 192, 339
FspBI CTAG 1 cut(s) 119
GluI GCNGC 3 cut(s) 57, 192, 339
HaeIII GGCC 1 cut(s) 92
HphI GGTGA 1 cut(s) 166
Hpy166II GTNNAC 2 cut(s) 208, 250
Hpy188I TCNGA 2 cut(s) 380, 470
Hpy188III TCNNGA 4 cut(s) 66, 157, 319, 401
Hpy8I GTNNAC 2 cut(s) 208, 250
HpyAV CCTTC 2 cut(s) 187, 470
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4V TGCA 3 cut(s) 184, 338, 393
HpyF10VI GCNNNNNNNGC 1 cut(s) 139
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 2 cut(s) 262, 305
LmnI GCTCC 1 cut(s) 380
LpnPI CCDG 2 cut(s) 74, 218
Lsp1109I GCAGC 3 cut(s) 43, 203, 350
MaeI CTAG 1 cut(s) 119
MalI GATC 2 cut(s) 264, 307
MboI GATC 2 cut(s) 262, 305
MboII GAAGA 1 cut(s) 163
MluCI AATT 1 cut(s) 102
MnlI CCTC 3 cut(s) 144, 153, 408
MseI TTAA 2 cut(s) 5, 374
MslI CAYNNNNRTG 1 cut(s) 432
MspA1I CMGCKG 1 cut(s) 194
Mva1269I GAATGC 1 cut(s) 393
MwoI GCNNNNNNNGC 1 cut(s) 139
NdeII GATC 2 cut(s) 262, 305
NmeAIII GCCGAG 1 cut(s) 280
NspV TTCGAA 1 cut(s) 277
PctI GAATGC 1 cut(s) 393
PkrI GCNGC 3 cut(s) 58, 193, 340
PshAI GACNNNNGTC 1 cut(s) 167
PvuII CAGCTG 1 cut(s) 194
RsaI GTAC 5 cut(s) 36, 100, 231, 288, 455
RsaNI GTAC 5 cut(s) 35, 99, 230, 287, 454
RseI CAYNNNNRTG 1 cut(s) 432
SaqAI TTAA 2 cut(s) 5, 374
SatI GCNGC 3 cut(s) 57, 192, 339
Sau3AI GATC 2 cut(s) 262, 305
ScaI AGTACT 1 cut(s) 231
SetI ASST 4 cut(s) 100, 179, 196, 343
SfuI TTCGAA 1 cut(s) 277
SmiMI CAYNNNNRTG 1 cut(s) 432
SmlI CTYRAG 1 cut(s) 157
SmoI CTYRAG 1 cut(s) 157
Sse9I AATT 1 cut(s) 102
SspI AATATT 1 cut(s) 45
SspMI CTAG 1 cut(s) 119
TaaI ACNGT 1 cut(s) 334
TaqI TCGA 3 cut(s) 277, 304, 402
TasI AATT 1 cut(s) 102
TatI WGTACW 3 cut(s) 34, 229, 453
Tru1I TTAA 2 cut(s) 5, 374
Tru9I TTAA 2 cut(s) 5, 374
TscAI CASTG 1 cut(s) 58
TseI GCWGC 3 cut(s) 56, 191, 338
TspDTI ATGAA 2 cut(s) 240, 397
TspRI CASTG 1 cut(s) 58
XspI CTAG 1 cut(s) 119
ZrmI AGTACT 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.