Prupe.6G118000_v2.0.a1

Transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000597
Physical Location & Seq
Reverse (-)
8648013 .. 8653336
5324 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G118000.3

Sequence Viewer

Length: 1308 bp
ATGAGGACGCTGCCGGTGCCACCAAGCTCAGAGGAGGCAGAGGTTATTGGCCAAGAAGAAGCTCATGACCAGGAGAAGCAACTTGATGCTGGTGCTCTTTTTGTTCTTAAATCCAAAGGATCATGGGTGCACTGCGGTTATCACTTGACAACCTCAATAGTTGCTCCAGCGCTGCTGAGTCTGCCGTATGCTTTCACCTTCCTTGGATGGGCGGCTGGGATTTTTTGTTTGGTCATCGGAGCAATCGTGACCTATTCATACAATTTACTCTCTTTGGTTCTTGAACATTATGCTAAATTGGGTCATCGCCATCTCCGATTCAGAGACATGGCTCATGACATTCTAGTTCCTCTTTTGGGAGGACAATGCATGAAGGCAGTTTACTTGCTGTCAAACCCAACTGGGACTATGAAGCTTTACGAGTTTGTGATCATATTTGGATGCTTGATGCTGTTTTTGGCACAAATTCCATCTTTTCACTCACTGAGGCACATCAACTTGGTGTCTGTTGTTCTTTGCTTAGCCTATAGCGTTTGTACCGCTGCTGCTTGCATCTACATTGGAAGTTCTTCCAAAGGGCCGCATAAGGACTATTCCTTGAAGGGCAACACTCAAAATCGTGTTTTTGGGGTCTTTAATGCCAATGCCATCATTGCTACAACATTTGGCAATGGCATCATTCCAGAAATTCAGGCAACAATAGCACCACCAGTGAAGGGAAAGATGTTCAAGGGATTATGTCTTTGTTATGCAGTAGTTATAATGACTTTTTCCAGTGTTGCTATCTCTGGCTATTGGGCATTTGGTAACCAAGCTGAAGGCCTCATACTTAGCAACTTCTTGGATGATGGCAAACCTTTGGTGCCAAAGTGGTTCATTTTCATGACCAACATTTTCACCATACTCCAACTATCAGCTGTTGGCGTGGTTTATCTGCAGCCAACAAATGAAGTGCTTGAACGAGCATTTGTGGATCCAACGAGCAAAGAGTTCTCTACTCGCAATGTGATCCCGAGGGTAATCTTTCGCTCGCTGTCTGTCGTCGTAGCAACAACCATAGCAGCAATGCTTCCATTTTTTGGGGACATCAATTCAGTTATTGGGGCTTTTGGTTTCATACCCCTTGACTTCATCTTGCCTGTTGTGTTCTACAACTTGACCTTTAAGCCCTCTAAAAAGAGCCCCATTTTCTTGTTAAACACCACTATTGCTGTGGTTTTCTCAATCTTGGGCGTTATAGCTGCAATTGCTGCTGTAAGACAAATAAGCCTCGATGCCAAGAGTTATCGGTTATTTGCTAATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

436

Amino Acids

47.56

Weight (kDa)

8.85

Isoelectric Point (pI)

33.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08230 AT1G08230 AT1G08230 AT1G08230 AT1G08230
fragaria_vesca FvH4_3g30140 FvH4_7g06340 FvH4_7g06350 FvH4_7g06350
malus_domestica MD02G1244800.v1.1 MD03G1133300.v1.1 MD07G1072100.v1.1 MD07G1072300.v1.1 MD11G1155800.v1.1 MD11G1156000.v1.1
prunus_persica Prupe.2G090300_v2.0.a1 Prupe.2G090500_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1
pyrus_communis pycom02g21070 pycom03g08970 pycom07g05520
rosa_chinensis RchiOBHm_Chr1g0334311 RchiOBHm_Chr1g0334341 RchiOBHm_Chr1g0334351 RchiOBHm_Chr1g0334371 RchiOBHm_Chr1g0334381 RchiOBHm_Chr1g0334431 RchiOBHm_Chr5g0055491 RchiOBHm_Chr5g0055511
rosa_laevigata RLG00000029454 RLG00000029457 RLG00000029458 RLG00000029459 RLG00000029461 RLG00000034991 RLG00000034993
rosa_multiflora Rmu_sc0001673.1_g000036 Rmu_sc0001673.1_g000040 Rmu_sc0016880.1_g000002 Rmu_ssc0000047.1_g000014 Rmu_ssc0000047.1_g000015 Rmu_ssc0000047.1_g000016 Rmu_ssc0000047.1_g000023
rosa_roxburghii Rroxscaffold_1G00024820 Rroxscaffold_1G00024850 Rroxscaffold_1G00024860 Rroxscaffold_4G00316880 Rroxscaffold_4G00316900
rosa_rugosa Rorug01G0113300.1 Rorug01G0113400 Rorug01G0113500 Rorug05G0293200 Rorug05G0293200 Rorug05G0293400.1
rosa_samantha Rh1AG138200 Rh1AG138300 Rh1AG139000 Rh1BG104900 Rh1CG130400 Rh1CG130500 Rh1CG131000 Rh1DG142700 Rh1DG142800 Rh5AG362800 Rh5AG363000 Rh5BG375000 Rh5BG375200 Rh5CG396900 Rh5CG397100 Rh5DG388300 Rh5DG388400
rosa_wichuraiana Rw0G003720 Rw0G003730 Rw0G003740 Rw1G011440 Rw1G011450 Rw5G034150 Rw5G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 761
AccB1I GGYRCC 2 cut(s) 16, 862
AccB7I CCANNNNNTGG 1 cut(s) 1079
AciI CCGC 4 cut(s) 135, 212, 540, 581
AclWI GGATC 4 cut(s) 127, 968, 981, 1003
AcoI YGGCCR 1 cut(s) 49
AcsI RAATTY 2 cut(s) 465, 687
AcuI CTGAAG 1 cut(s) 837
AfaI GTAC 1 cut(s) 538
AfeI AGCGCT 1 cut(s) 171
AfiI CCNNNNNNNGG 4 cut(s) 208, 356, 716, 1079
AgsI TTSAA 4 cut(s) 284, 601, 730, 959
AjnI CCWGG 1 cut(s) 69
AluBI AGCT 6 cut(s) 27, 62, 415, 815, 917, 1241
AluI AGCT 6 cut(s) 27, 62, 415, 815, 917, 1241
Alw21I GWGCWC 2 cut(s) 97, 132
Alw26I GTCTC 1 cut(s) 318
Alw44I GTGCAC 1 cut(s) 128
AlwI GGATC 4 cut(s) 127, 968, 981, 1003
Ama87I CYCGRG 1 cut(s) 1012
Aor51HI AGCGCT 1 cut(s) 171
AoxI GGCC 3 cut(s) 49, 578, 820
ApaLI GTGCAC 1 cut(s) 128
ApeKI GCWGC 8 cut(s) 10, 172, 542, 545, 937, 1061, 1241, 1250
ApoI RAATTY 2 cut(s) 465, 687
Asp700I GAANNNNTTC 1 cut(s) 568
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 1 cut(s) 578
AsuHPI GGTGA 2 cut(s) 187, 889
AvaI CYCGRG 1 cut(s) 1012
BaeGI GKGCMC 1 cut(s) 132
BalI TGGCCA 1 cut(s) 51
BamHI GGATCC 1 cut(s) 973
BanI GGYRCC 2 cut(s) 16, 862
BanII GRGCYC 1 cut(s) 1184
BarI GAAGNNNNNNTAC 4 cut(s) 365, 397, 810, 842
Bbv12I GWGCWC 2 cut(s) 97, 132
BbvI GCAGC 7 cut(s) 159, 529, 532, 949, 1073, 1228, 1237
BccI CCATC 5 cut(s) 201, 318, 478, 656, 842
BceAI ACGGC 1 cut(s) 169
BciT130I CCWGG 1 cut(s) 71
BclI TGATCA 1 cut(s) 429
BcoDI GTCTC 1 cut(s) 318
BfaI CTAG 1 cut(s) 344
BfmI CTRYAG 2 cut(s) 526, 935
BfoI RGCGCY 1 cut(s) 173
BlpI GCTNAGC 1 cut(s) 520
Bme1390I CCNGG 1 cut(s) 71
BmeT110I CYCGRG 1 cut(s) 1012
BmgT120I GGNCC 1 cut(s) 578
BmiI GGNNCC 3 cut(s) 18, 864, 975
BmrFI CCNGG 1 cut(s) 71
BmrI ACTGGG 1 cut(s) 411
BmsI GCATC 6 cut(s) 76, 431, 438, 561, 684, 1264
BmuI ACTGGG 1 cut(s) 411
BpmI CTGGAG 1 cut(s) 150
Bpu1102I GCTNAGC 1 cut(s) 520
BsaJI CCNNGG 2 cut(s) 202, 1013
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bsc4I CCNNNNNNNGG 4 cut(s) 208, 356, 716, 1079
Bse118I RCCGGY 1 cut(s) 13
Bse1I ACTGG 3 cut(s) 406, 710, 774
Bse3DI GCAATG 4 cut(s) 651, 676, 1009, 1071
BseBI CCWGG 1 cut(s) 71
BseDI CCNNGG 2 cut(s) 202, 1013
BseGI GGATG 3 cut(s) 212, 446, 850
BseLI CCNNNNNNNGG 4 cut(s) 208, 356, 716, 1079
BseMI GCAATG 4 cut(s) 651, 676, 1009, 1071
BseMII CTCAG 3 cut(s) 42, 167, 476
BseNI ACTGG 3 cut(s) 406, 710, 774
BseRI GAGGAG 1 cut(s) 47
BseSI GKGCMC 1 cut(s) 132
BseXI GCAGC 7 cut(s) 159, 529, 532, 949, 1073, 1228, 1237
BseYI CCCAGC 1 cut(s) 215
BshFI GGCC 3 cut(s) 51, 580, 822
BshNI GGYRCC 2 cut(s) 16, 862
BsiHKAI GWGCWC 2 cut(s) 97, 132
BsiHKCI CYCGRG 1 cut(s) 1012
BsiSI CCGG 1 cut(s) 14
BslFI GGGAC 2 cut(s) 418, 1097
BslI CCNNNNNNNGG 4 cut(s) 208, 356, 716, 1079
BsmAI GTCTC 1 cut(s) 318
BsmFI GGGAC 2 cut(s) 418, 1097
BsnI GGCC 3 cut(s) 51, 580, 822
BsoBI CYCGRG 1 cut(s) 1012
Bsp1286I GDGCHC 3 cut(s) 97, 132, 1184
Bsp143I GATC 4 cut(s) 119, 429, 973, 1008
Bsp1720I GCTNAGC 1 cut(s) 520
BspACI CCGC 4 cut(s) 135, 212, 540, 581
BspANI GGCC 3 cut(s) 51, 580, 822
BspCNI CTCAG 3 cut(s) 41, 168, 477
BspHI TCATGA 3 cut(s) 64, 334, 882
BspLI GGNNCC 3 cut(s) 18, 864, 975
BspMAI CTGCAG 1 cut(s) 939
BspPI GGATC 4 cut(s) 127, 968, 981, 1003
BspT107I GGYRCC 2 cut(s) 16, 862
BsrDI GCAATG 4 cut(s) 651, 676, 1009, 1071
BsrFI RCCGGY 1 cut(s) 13
BsrI ACTGG 3 cut(s) 406, 710, 774
BssAI RCCGGY 1 cut(s) 13
BssECI CCNNGG 2 cut(s) 202, 1013
BssMI GATC 4 cut(s) 119, 429, 973, 1008
BssT1I CCWWGG 1 cut(s) 202
Bst2UI CCWGG 1 cut(s) 71
BstAPI GCANNNNNTGC 1 cut(s) 1250
BstC8I GCNNGC 2 cut(s) 550, 1031
BstDEI CTNAG 5 cut(s) 28, 176, 485, 520, 830
BstEII GGTNACC 1 cut(s) 806
BstF5I GGATG 3 cut(s) 212, 446, 850
BstH2I RGCGCY 1 cut(s) 173
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 4 cut(s) 122, 432, 976, 1011
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 4 cut(s) 119, 429, 973, 1008
BstMWI GCNNNNNNNGC 6 cut(s) 16, 181, 653, 701, 1247, 1250
BstNI CCWGG 1 cut(s) 71
BstPI GGTNACC 1 cut(s) 806
BstSCI CCNGG 1 cut(s) 69
BstSFI CTRYAG 2 cut(s) 526, 935
BstSLI GKGCMC 1 cut(s) 132
BstV1I GCAGC 7 cut(s) 159, 529, 532, 949, 1073, 1228, 1237
BstX2I RGATCY 1 cut(s) 973
BstYI RGATCY 1 cut(s) 973
BsuRI GGCC 3 cut(s) 51, 580, 822
BtgZI GCGATG 1 cut(s) 290
BtsCI GGATG 3 cut(s) 212, 446, 850
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 4 cut(s) 130, 482, 717, 781
Cac8I GCNNGC 2 cut(s) 550, 1031
CciI TCATGA 3 cut(s) 64, 334, 882
CfoI GCGC 1 cut(s) 172
Cfr10I RCCGGY 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 578
CseI GACGC 1 cut(s) 16
Csp6I GTAC 1 cut(s) 537
CviAII CATG 6 cut(s) 65, 123, 328, 335, 370, 883
CviQI GTAC 1 cut(s) 537
DdeI CTNAG 5 cut(s) 28, 176, 485, 520, 830
DpnI GATC 4 cut(s) 121, 431, 975, 1010
DpnII GATC 4 cut(s) 119, 429, 973, 1008
EaeI YGGCCR 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 202
Eco147I AGGCCT 1 cut(s) 822
Eco24I GRGCYC 1 cut(s) 1184
Eco47III AGCGCT 1 cut(s) 171
Eco57I CTGAAG 1 cut(s) 837
Eco88I CYCGRG 1 cut(s) 1012
Eco91I GGTNACC 1 cut(s) 806
EcoO65I GGTNACC 1 cut(s) 806
EcoRII CCWGG 1 cut(s) 69
EcoT14I CCWWGG 1 cut(s) 202
EcoT22I ATGCAT 1 cut(s) 371
EcoT38I GRGCYC 1 cut(s) 1184
ErhI CCWWGG 1 cut(s) 202
FaeI CATG 6 cut(s) 68, 126, 331, 338, 373, 886
FaqI GGGAC 2 cut(s) 418, 1097
FatI CATG 6 cut(s) 64, 122, 327, 334, 369, 882
FbaI TGATCA 1 cut(s) 429
FokI GGATG 3 cut(s) 219, 453, 857
FriOI GRGCYC 1 cut(s) 1184
FspBI CTAG 1 cut(s) 344
GlaI GCGC 1 cut(s) 171
GsaI CCCAGC 1 cut(s) 219
GsuI CTGGAG 1 cut(s) 150
HaeII RGCGCY 1 cut(s) 173
HaeIII GGCC 3 cut(s) 51, 580, 822
HapII CCGG 1 cut(s) 14
HgaI GACGC 1 cut(s) 16
HhaI GCGC 1 cut(s) 172
Hin1II CATG 6 cut(s) 68, 126, 331, 338, 373, 886
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HindIII AAGCTT 1 cut(s) 413
HinfI GANTC 2 cut(s) 178, 318
HpaII CCGG 1 cut(s) 14
HphI GGTGA 2 cut(s) 187, 889
Hpy166II GTNNAC 2 cut(s) 130, 382
Hpy188I TCNGA 4 cut(s) 31, 239, 317, 323
Hpy188III TCNNGA 7 cut(s) 65, 247, 281, 335, 683, 883, 1012
Hpy8I GTNNAC 2 cut(s) 130, 382
Hpy99I CGWCG 1 cut(s) 1046
HpyAV CCTTC 5 cut(s) 208, 367, 595, 709, 812
HpyCH4V TGCA 6 cut(s) 130, 369, 552, 752, 937, 1244
HpyF10VI GCNNNNNNNGC 6 cut(s) 16, 181, 653, 701, 1247, 1250
HpyF3I CTNAG 5 cut(s) 28, 176, 485, 520, 830
Hsp92II CATG 6 cut(s) 68, 126, 331, 338, 373, 886
HspAI GCGC 1 cut(s) 170
Ksp22I TGATCA 1 cut(s) 429
Kzo9I GATC 4 cut(s) 119, 429, 973, 1008
LmnI GCTCC 2 cut(s) 169, 239
Lsp1109I GCAGC 7 cut(s) 159, 529, 532, 949, 1073, 1228, 1237
LweI GCATC 6 cut(s) 76, 431, 438, 561, 684, 1264
MaeI CTAG 1 cut(s) 344
MaeIII GTNAC 2 cut(s) 247, 806
MalI GATC 4 cut(s) 121, 431, 975, 1010
MboI GATC 4 cut(s) 119, 429, 973, 1008
MboII GAAGA 2 cut(s) 68, 561
MfeI CAATTG 1 cut(s) 1245
MflI RGATCY 1 cut(s) 973
MhlI GDGCHC 3 cut(s) 97, 132, 1184
MlsI TGGCCA 1 cut(s) 51
MluCI AATT 6 cut(s) 262, 296, 465, 687, 1090, 1245
MluNI TGGCCA 1 cut(s) 51
MlyI GAGTC 1 cut(s) 187
MmeI TCCRAC 2 cut(s) 931, 1001
Mox20I TGGCCA 1 cut(s) 51
Mph1103I ATGCAT 1 cut(s) 371
MroXI GAANNNNTTC 1 cut(s) 568
MscI TGGCCA 1 cut(s) 51
MseI TTAA 4 cut(s) 108, 636, 1164, 1196
MslI CAYNNNNRTG 1 cut(s) 881
Msp20I TGGCCA 1 cut(s) 51
MspA1I CMGCKG 2 cut(s) 542, 917
MspI CCGG 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 71
MunI CAATTG 1 cut(s) 1245
MvaI CCWGG 1 cut(s) 71
MwoI GCNNNNNNNGC 6 cut(s) 16, 181, 653, 701, 1247, 1250
NdeII GATC 4 cut(s) 119, 429, 973, 1008
NlaIII CATG 6 cut(s) 68, 126, 331, 338, 373, 886
NlaIV GGNNCC 3 cut(s) 18, 864, 975
NmuCI GTSAC 1 cut(s) 247
NsiI ATGCAT 1 cut(s) 371
PagI TCATGA 3 cut(s) 64, 334, 882
PceI AGGCCT 1 cut(s) 822
PcsI WCGNNNNNNNCGW 2 cut(s) 243, 313
PdmI GAANNNNTTC 1 cut(s) 568
PfeI GAWTC 1 cut(s) 318
PflMI CCANNNNNTGG 1 cut(s) 1079
PleI GAGTC 1 cut(s) 186
PpsI GAGTC 1 cut(s) 186
PsiI TTATAA 1 cut(s) 761
Psp6I CCWGG 1 cut(s) 69
PspEI GGTNACC 1 cut(s) 806
PspFI CCCAGC 1 cut(s) 215
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 3 cut(s) 18, 864, 975
PspPI GGNCC 1 cut(s) 578
PstI CTGCAG 1 cut(s) 939
PsuI RGATCY 1 cut(s) 973
PvuII CAGCTG 1 cut(s) 917
RsaI GTAC 1 cut(s) 538
RsaNI GTAC 1 cut(s) 537
RseI CAYNNNNRTG 1 cut(s) 881
SaqAI TTAA 4 cut(s) 108, 636, 1164, 1196
Sau3AI GATC 4 cut(s) 119, 429, 973, 1008
Sau96I GGNCC 1 cut(s) 578
SchI GAGTC 1 cut(s) 187
ScrFI CCNGG 1 cut(s) 71
SduI GDGCHC 3 cut(s) 97, 132, 1184
SfaNI GCATC 6 cut(s) 76, 431, 438, 561, 684, 1264
SfcI CTRYAG 2 cut(s) 526, 935
SmiMI CAYNNNNRTG 1 cut(s) 881
Sse9I AATT 6 cut(s) 262, 296, 465, 687, 1090, 1245
SseBI AGGCCT 1 cut(s) 822
SsiI CCGC 4 cut(s) 135, 212, 540, 581
SspMI CTAG 1 cut(s) 344
StuI AGGCCT 1 cut(s) 822
StyD4I CCNGG 1 cut(s) 69
StyI CCWWGG 1 cut(s) 202
TaqI TCGA 1 cut(s) 1272
TasI AATT 6 cut(s) 262, 296, 465, 687, 1090, 1245
TauI GCSGC 2 cut(s) 215, 583
TfiI GAWTC 1 cut(s) 318
Tru1I TTAA 4 cut(s) 108, 636, 1164, 1196
Tru9I TTAA 4 cut(s) 108, 636, 1164, 1196
TscAI CASTG 4 cut(s) 137, 489, 717, 781
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 8 cut(s) 10, 172, 542, 545, 937, 1061, 1241, 1250
Tsp45I GTSAC 1 cut(s) 247
TspDTI ATGAA 8 cut(s) 246, 386, 425, 865, 871, 963, 1105, 1120
TspRI CASTG 4 cut(s) 137, 489, 717, 781
Van91I CCANNNNNTGG 1 cut(s) 1079
VneI GTGCAC 1 cut(s) 128
XapI RAATTY 2 cut(s) 465, 687
XcmI CCANNNNNNNNNTGG 1 cut(s) 1210
XmnI GAANNNNTTC 1 cut(s) 568
XspI CTAG 1 cut(s) 344
Zsp2I ATGCAT 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.