Prupe.2G090500_v2.0.a1

GABA transporter 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000597
Physical Location & Seq
Forward (+)
14302373 .. 14306482
4110 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G090500.1

Sequence Viewer

Length: 1395 bp
ATGGGAACGGTGGCTCCAAACTTGATGGAAGTATCTGCAACTGCAACTGCAAGTGTTCATAAGGAAAACGGTGTGGTTGCCAACCCTCCAAAAGAGCTTGATGCCGGAGCCTTGTTCGTCCTCAAATCTCAAGGGTCGTGGTTGCATTGTGGGTATCACTTGACGACATCCATAGTGGCTCCCGTGCTTCTAAGTCTTCCCTTTGCGCTCACCTTGCTAGGCTGGGTTGGAGGACTCATTTGCCTTGCCTTGGCTGGTTTGGTCACTTTCTATTCCTACAATCTTTTATCTCTGGTTCTGGAGCACCAAGAAAAGCTTGGACATCGTCAGCTTCGCTTTCGAGACATGGCCAGAGACATTTTAGGTCCTGGATGGGGCAAATATTTTGTTGGTCCTTTGCAATTTTGGATATGTTATGGTGCTGTTATTGCTTGCACTCTACTTGGAGGGCAGAGCCTTAAGTTTATTTACCTGCTTTCCAACCCAGATGGGAAAATGAAGCTCTACCAATTTATAACTATGTTTGGAGGCGTGACACTACTTTTGGCTCAAATGCCATCCTTCCACTCCCTAAGGCACATAAACCTTGTATCTCTTATCCTTTGCCTTGCATTCAGCGCTTGCGTCACGGCTGGTTCTATATACATTGGACATTCTAATAAGGCTCCTGTAAGGGACTATACCGTGAAAGGAAGTGCAAAAGACCGCAGTTTTGGTATCTTCAATGCCATTTCAATCATCGCTACTACATATGCAAGTGGAATAATTCCTGAAATACAGGCAACTTTAGCTCCTCCGGTGAAAGGCAAGATGTTCAAAGGCCTATGTGTTTGCTATAGTGTGATAGTGACGACATATTTCAGTGTGGCAATCTCTGGGTACTGGGCGTTTGGAAATCAAGCAATGGGAACAGTTCTTTCTAATTTTATGGGTGATGAGAAGCCTTTACTGCCTACCTGGTTTTTGCTCATGACCAATGTCTTCACTCTTTCGCAAGTTTCTGCTGTCACAGTGGTTTACTTGCAGCCAACAAATGAAGTGTTTGAGAAAAAATTTGCAGACCCAAAGATGCCTCAATTTTCCATCCGTAATGTTGTGCCGAGATTGATTCTCCGGTCACTGTCCGTCGTGGTAGCTACAATATTTGCTGCAATGTTGCCTTTCTTTGGAGATATCATGGCCTTGTTTGGGGCATTTGGATGCATTCCTCTAGACTTCATTTTGCCAATGATTTTCTACAACGTAACTTTCAAACCCTCCAAACAGAGCCTTATTTTTTGGGTGAACACATTGATAGCAGGAGCTTCCTTCTTGTTGGTCGGGGTAGGGGCAGTGGCATCTGTTCGACAAATAGTTCTTGATGCCAAAACATATCGCTTATTTGCTAACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

465

Amino Acids

50.61

Weight (kDa)

9.29

Isoelectric Point (pI)

30.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08230 AT1G08230 AT1G08230 AT1G08230 AT1G08230
fragaria_vesca FvH4_3g30140 FvH4_7g06340 FvH4_7g06350 FvH4_7g06350
malus_domestica MD02G1244800.v1.1 MD03G1133300.v1.1 MD07G1072100.v1.1 MD07G1072300.v1.1 MD11G1155800.v1.1 MD11G1156000.v1.1
prunus_persica Prupe.2G090300_v2.0.a1 Prupe.2G090500_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1
pyrus_communis pycom02g21070 pycom03g08970 pycom07g05520
rosa_chinensis RchiOBHm_Chr1g0334311 RchiOBHm_Chr1g0334341 RchiOBHm_Chr1g0334351 RchiOBHm_Chr1g0334371 RchiOBHm_Chr1g0334381 RchiOBHm_Chr1g0334431 RchiOBHm_Chr5g0055491 RchiOBHm_Chr5g0055511
rosa_laevigata RLG00000029454 RLG00000029457 RLG00000029458 RLG00000029459 RLG00000029461 RLG00000034991 RLG00000034993
rosa_multiflora Rmu_sc0001673.1_g000036 Rmu_sc0001673.1_g000040 Rmu_sc0016880.1_g000002 Rmu_ssc0000047.1_g000014 Rmu_ssc0000047.1_g000015 Rmu_ssc0000047.1_g000016 Rmu_ssc0000047.1_g000023
rosa_roxburghii Rroxscaffold_1G00024820 Rroxscaffold_1G00024850 Rroxscaffold_1G00024860 Rroxscaffold_4G00316880 Rroxscaffold_4G00316900
rosa_rugosa Rorug01G0113300.1 Rorug01G0113400 Rorug01G0113500 Rorug05G0293200 Rorug05G0293200 Rorug05G0293400.1
rosa_samantha Rh1AG138200 Rh1AG138300 Rh1AG139000 Rh1BG104900 Rh1CG130400 Rh1CG130500 Rh1CG131000 Rh1DG142700 Rh1DG142800 Rh5AG362800 Rh5AG363000 Rh5BG375000 Rh5BG375200 Rh5CG396900 Rh5CG397100 Rh5DG388300 Rh5DG388400
rosa_wichuraiana Rw0G003720 Rw0G003730 Rw0G003740 Rw1G011440 Rw1G011450 Rw5G034150 Rw5G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 515
Acc36I ACCTGC 1 cut(s) 480
AciI CCGC 1 cut(s) 706
AcoI YGGCCR 1 cut(s) 348
AcsI RAATTY 1 cut(s) 1052
AfaI GTAC 1 cut(s) 881
AfeI AGCGCT 1 cut(s) 619
AfiI CCNNNNNNNGG 5 cut(s) 250, 374, 803, 1166, 1188
AflII CTTAAG 1 cut(s) 458
AflIII ACRYGT 1 cut(s) 1389
AgsI TTSAA 4 cut(s) 724, 735, 817, 1252
AjnI CCWGG 2 cut(s) 367, 956
AloI GAACNNNNNNTCC 1 cut(s) 30
AluBI AGCT 7 cut(s) 97, 316, 331, 502, 791, 1136, 1304
AluI AGCT 7 cut(s) 97, 316, 331, 502, 791, 1136, 1304
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 2 cut(s) 336, 348
Aor51HI AGCGCT 1 cut(s) 619
AoxI GGCC 3 cut(s) 348, 820, 1179
ApeKI GCWGC 2 cut(s) 1024, 1148
ApoI RAATTY 1 cut(s) 1052
ArsI GACNNNNNNTTYG 4 cut(s) 526, 558, 695, 727
AspLEI GCGC 2 cut(s) 208, 620
AspS9I GGNCC 2 cut(s) 365, 392
AsuHPI GGTGA 4 cut(s) 202, 811, 944, 1294
AvaII GGWCC 2 cut(s) 365, 392
AxyI CCTNAGG 1 cut(s) 572
BalI TGGCCA 1 cut(s) 350
BbsI GAAGAC 2 cut(s) 188, 973
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 2 cut(s) 1036, 1135
BccI CCATC 5 cut(s) 19, 366, 482, 565, 1091
BceAI ACGGC 1 cut(s) 645
BciT130I CCWGG 2 cut(s) 369, 958
BcoDI GTCTC 2 cut(s) 336, 348
BfaI CTAG 2 cut(s) 218, 1211
BfmI CTRYAG 1 cut(s) 835
BfoI RGCGCY 1 cut(s) 621
BfrI CTTAAG 1 cut(s) 458
BfuAI ACCTGC 1 cut(s) 480
BisI GCNGC 2 cut(s) 1025, 1149
BlsI GCNGC 2 cut(s) 1026, 1150
Bme1390I CCNGG 2 cut(s) 369, 958
Bme18I GGWCC 2 cut(s) 365, 392
BmgT120I GGNCC 2 cut(s) 365, 392
BmiI GGNNCC 4 cut(s) 15, 109, 180, 666
BmrFI CCNGG 2 cut(s) 369, 958
BmrI ACTGGG 1 cut(s) 892
BmsI GCATC 5 cut(s) 91, 1059, 1190, 1346, 1351
BmuI ACTGGG 1 cut(s) 892
BoxI GACNNNNGTC 1 cut(s) 977
BpiI GAAGAC 2 cut(s) 188, 973
BpmI CTGGAG 1 cut(s) 320
BpuEI CTTGAG 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 249
BsaWI WCCGGW 2 cut(s) 796, 1113
BsaXI ACNNNNNCTCC 3 cut(s) 28, 775, 805
Bsc4I CCNNNNNNNGG 5 cut(s) 250, 374, 803, 1166, 1188
Bse1I ACTGG 1 cut(s) 887
Bse21I CCTNAGG 1 cut(s) 572
Bse3DI GCAATG 2 cut(s) 909, 1158
BseBI CCWGG 2 cut(s) 369, 958
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 5 cut(s) 167, 377, 557, 1083, 1205
BseLI CCNNNNNNNGG 5 cut(s) 250, 374, 803, 1166, 1188
BseMI GCAATG 2 cut(s) 909, 1158
BseNI ACTGG 1 cut(s) 887
BseRI GAGGAG 1 cut(s) 783
BseXI GCAGC 2 cut(s) 1036, 1135
BseYI CCCAGC 1 cut(s) 222
BshFI GGCC 3 cut(s) 350, 822, 1181
BsiHKAI GWGCWC 1 cut(s) 306
BsiSI CCGG 3 cut(s) 105, 797, 1114
BslFI GGGAC 1 cut(s) 689
BslI CCNNNNNNNGG 5 cut(s) 250, 374, 803, 1166, 1188
BsmAI GTCTC 2 cut(s) 336, 348
BsmFI GGGAC 1 cut(s) 689
BsmI GAATGC 2 cut(s) 611, 1203
BsnI GGCC 3 cut(s) 350, 822, 1181
Bsp1286I GDGCHC 1 cut(s) 306
BspACI CCGC 1 cut(s) 706
BspANI GGCC 3 cut(s) 350, 822, 1181
BspHI TCATGA 1 cut(s) 969
BspLI GGNNCC 4 cut(s) 15, 109, 180, 666
BspMI ACCTGC 1 cut(s) 480
BspTI CTTAAG 1 cut(s) 458
BsrDI GCAATG 2 cut(s) 909, 1158
BsrI ACTGG 1 cut(s) 887
BssECI CCNNGG 1 cut(s) 249
BssT1I CCWWGG 1 cut(s) 249
Bst2UI CCWGG 2 cut(s) 369, 958
Bst4CI ACNGT 6 cut(s) 10, 71, 685, 913, 1012, 1122
BstAFI CTTAAG 1 cut(s) 458
BstC8I GCNNGC 2 cut(s) 433, 622
BstDEI CTNAG 2 cut(s) 191, 572
BstF5I GGATG 5 cut(s) 167, 377, 557, 1083, 1205
BstH2I RGCGCY 1 cut(s) 621
BstHHI GCGC 2 cut(s) 208, 620
BstMAI GTCTC 2 cut(s) 336, 348
BstMWI GCNNNNNNNGC 5 cut(s) 214, 428, 617, 788, 949
BstNI CCWGG 2 cut(s) 369, 958
BstNSI RCATGY 1 cut(s) 1393
BstPAI GACNNNNGTC 1 cut(s) 977
BstSCI CCNGG 2 cut(s) 367, 956
BstSFI CTRYAG 1 cut(s) 835
BstV1I GCAGC 2 cut(s) 1036, 1135
BstV2I GAAGAC 2 cut(s) 188, 973
Bsu36I CCTNAGG 1 cut(s) 572
BsuRI GGCC 3 cut(s) 350, 822, 1181
BtgZI GCGATG 1 cut(s) 724
BtsCI GGATG 5 cut(s) 167, 377, 557, 1083, 1205
BtsI GCAGTG 1 cut(s) 1338
BtsIMutI CAGTG 4 cut(s) 868, 1017, 1118, 1338
BveI ACCTGC 1 cut(s) 480
Cac8I GCNNGC 2 cut(s) 433, 622
CciI TCATGA 1 cut(s) 969
CfoI GCGC 2 cut(s) 208, 620
Cfr13I GGNCC 2 cut(s) 365, 392
CseI GACGC 1 cut(s) 613
CsiI ACCWGGT 1 cut(s) 956
Csp6I GTAC 1 cut(s) 880
CspCI CAANNNNNGTGG 2 cut(s) 119, 154
CviAII CATG 4 cut(s) 346, 970, 1177, 1390
CviQI GTAC 1 cut(s) 880
DdeI CTNAG 2 cut(s) 191, 572
EaeI YGGCCR 1 cut(s) 348
Eco130I CCWWGG 1 cut(s) 249
Eco147I AGGCCT 1 cut(s) 822
Eco32I GATATC 1 cut(s) 1174
Eco47I GGWCC 2 cut(s) 365, 392
Eco47III AGCGCT 1 cut(s) 619
Eco81I CCTNAGG 1 cut(s) 572
EcoO109I RGGNCCY 1 cut(s) 365
EcoRII CCWGG 2 cut(s) 367, 956
EcoRV GATATC 1 cut(s) 1174
EcoT14I CCWWGG 1 cut(s) 249
EcoT22I ATGCAT 1 cut(s) 1205
ErhI CCWWGG 1 cut(s) 249
FaeI CATG 4 cut(s) 349, 973, 1180, 1393
FalI AAGNNNNNCTT 2 cut(s) 300, 332
FaqI GGGAC 1 cut(s) 689
FatI CATG 4 cut(s) 345, 969, 1176, 1389
FauNDI CATATG 1 cut(s) 751
Fnu4HI GCNGC 2 cut(s) 1025, 1149
FokI GGATG 5 cut(s) 154, 384, 544, 1070, 1212
Fsp4HI GCNGC 2 cut(s) 1025, 1149
FspBI CTAG 2 cut(s) 218, 1211
GlaI GCGC 2 cut(s) 207, 619
GluI GCNGC 2 cut(s) 1025, 1149
GsaI CCCAGC 1 cut(s) 226
GsuI CTGGAG 1 cut(s) 320
HaeII RGCGCY 1 cut(s) 621
HaeIII GGCC 3 cut(s) 350, 822, 1181
HapII CCGG 3 cut(s) 105, 797, 1114
HgaI GACGC 1 cut(s) 613
HhaI GCGC 2 cut(s) 208, 620
Hin1II CATG 4 cut(s) 349, 973, 1180, 1393
Hin6I GCGC 2 cut(s) 206, 618
HinP1I GCGC 2 cut(s) 206, 618
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 2 cut(s) 234, 1108
HpaII CCGG 3 cut(s) 105, 797, 1114
HphI GGTGA 4 cut(s) 202, 811, 944, 1294
Hpy166II GTNNAC 2 cut(s) 1018, 1285
Hpy188III TCNNGA 6 cut(s) 299, 341, 770, 970, 1211, 1358
Hpy8I GTNNAC 2 cut(s) 1018, 1285
Hpy99I CGWCG 1 cut(s) 1130
HpyAV CCTTC 2 cut(s) 571, 1318
HpyCH4III ACNGT 6 cut(s) 10, 71, 685, 913, 1012, 1122
HpyCH4IV ACGT 1 cut(s) 1242
HpyF10VI GCNNNNNNNGC 5 cut(s) 214, 428, 617, 788, 949
HpyF3I CTNAG 2 cut(s) 191, 572
HpySE526I ACGT 1 cut(s) 1242
Hsp92II CATG 4 cut(s) 349, 973, 1180, 1393
HspAI GCGC 2 cut(s) 206, 618
LmnI GCTCC 7 cut(s) 19, 107, 184, 301, 670, 796, 1301
Lsp1109I GCAGC 2 cut(s) 1036, 1135
LweI GCATC 5 cut(s) 91, 1059, 1190, 1346, 1351
MabI ACCWGGT 1 cut(s) 956
MaeI CTAG 2 cut(s) 218, 1211
MaeII ACGT 1 cut(s) 1242
MaeIII GTNAC 7 cut(s) 262, 532, 625, 847, 1006, 1116, 1243
MboII GAAGA 3 cut(s) 188, 712, 973
MhlI GDGCHC 1 cut(s) 306
MlsI TGGCCA 1 cut(s) 350
MluCI AATT 6 cut(s) 401, 509, 765, 922, 1052, 1076
MluNI TGGCCA 1 cut(s) 350
MlyI GAGTC 1 cut(s) 228
MmeI TCCRAC 2 cut(s) 208, 504
MnlI CCTC 9 cut(s) 96, 131, 224, 440, 521, 804, 1083, 1218, 1267
Mox20I TGGCCA 1 cut(s) 350
Mph1103I ATGCAT 1 cut(s) 1205
MscI TGGCCA 1 cut(s) 350
MseI TTAA 1 cut(s) 459
MslI CAYNNNNRTG 1 cut(s) 1198
Msp20I TGGCCA 1 cut(s) 350
MspCI CTTAAG 1 cut(s) 458
MspI CCGG 3 cut(s) 105, 797, 1114
MspR9I CCNGG 2 cut(s) 369, 958
Mva1269I GAATGC 2 cut(s) 611, 1203
MvaI CCWGG 2 cut(s) 369, 958
MwoI GCNNNNNNNGC 5 cut(s) 214, 428, 617, 788, 949
NdeI CATATG 1 cut(s) 751
NlaIII CATG 4 cut(s) 349, 973, 1180, 1393
NlaIV GGNNCC 4 cut(s) 15, 109, 180, 666
NmeAIII GCCGAG 1 cut(s) 1125
NmuCI GTSAC 6 cut(s) 262, 532, 625, 847, 1006, 1116
NsiI ATGCAT 1 cut(s) 1205
NspI RCATGY 1 cut(s) 1393
PagI TCATGA 1 cut(s) 969
PceI AGGCCT 1 cut(s) 822
PciI ACATGT 1 cut(s) 1389
PctI GAATGC 2 cut(s) 611, 1203
PfeI GAWTC 1 cut(s) 1108
PflFI GACNNNGTC 1 cut(s) 324
PfoI TCCNGGA 1 cut(s) 367
PkrI GCNGC 2 cut(s) 1026, 1150
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
PpuMI RGGWCCY 1 cut(s) 365
PscI ACATGT 1 cut(s) 1389
PshAI GACNNNNGTC 1 cut(s) 977
PsiI TTATAA 1 cut(s) 515
Psp5II RGGWCCY 1 cut(s) 365
Psp6I CCWGG 2 cut(s) 367, 956
PspFI CCCAGC 1 cut(s) 222
PspGI CCWGG 2 cut(s) 367, 956
PspN4I GGNNCC 4 cut(s) 15, 109, 180, 666
PspPI GGNCC 2 cut(s) 365, 392
PspPPI RGGWCCY 1 cut(s) 365
PsyI GACNNNGTC 1 cut(s) 324
RsaI GTAC 1 cut(s) 881
RsaNI GTAC 1 cut(s) 880
RseI CAYNNNNRTG 1 cut(s) 1198
SaqAI TTAA 1 cut(s) 459
SatI GCNGC 2 cut(s) 1025, 1149
Sau96I GGNCC 2 cut(s) 365, 392
SchI GAGTC 1 cut(s) 228
ScrFI CCNGG 2 cut(s) 369, 958
SduI GDGCHC 1 cut(s) 306
SexAI ACCWGGT 1 cut(s) 956
SfaNI GCATC 5 cut(s) 91, 1059, 1190, 1346, 1351
SfcI CTRYAG 1 cut(s) 835
SinI GGWCC 2 cut(s) 365, 392
SmiMI CAYNNNNRTG 1 cut(s) 1198
SmlI CTYRAG 2 cut(s) 129, 458
SmoI CTYRAG 2 cut(s) 129, 458
Sse9I AATT 6 cut(s) 401, 509, 765, 922, 1052, 1076
SseBI AGGCCT 1 cut(s) 822
SsiI CCGC 1 cut(s) 706
SspI AATATT 2 cut(s) 383, 1143
SspMI CTAG 2 cut(s) 218, 1211
StuI AGGCCT 1 cut(s) 822
StyD4I CCNGG 2 cut(s) 367, 956
StyI CCWWGG 1 cut(s) 249
TaaI ACNGT 6 cut(s) 10, 71, 685, 913, 1012, 1122
TaiI ACGT 1 cut(s) 1245
TaqI TCGA 2 cut(s) 340, 1345
TasI AATT 6 cut(s) 401, 509, 765, 922, 1052, 1076
TfiI GAWTC 1 cut(s) 1108
Tru1I TTAA 1 cut(s) 459
Tru9I TTAA 1 cut(s) 459
TscAI CASTG 4 cut(s) 868, 1017, 1125, 1338
TseFI GTSAC 6 cut(s) 262, 532, 625, 847, 1006, 1116
TseI GCWGC 2 cut(s) 1024, 1148
Tsp45I GTSAC 6 cut(s) 262, 532, 625, 847, 1006, 1116
TspDTI ATGAA 4 cut(s) 47, 512, 1050, 1207
TspGWI ACGGA 2 cut(s) 1076, 1114
TspRI CASTG 4 cut(s) 868, 1017, 1125, 1338
Tth111I GACNNNGTC 1 cut(s) 324
Vha464I CTTAAG 1 cut(s) 458
VpaK11BI GGWCC 2 cut(s) 365, 392
XapI RAATTY 1 cut(s) 1052
XbaI TCTAGA 1 cut(s) 1210
XceI RCATGY 1 cut(s) 1393
XcmI CCANNNNNNNNNTGG 1 cut(s) 314
XspI CTAG 2 cut(s) 218, 1211
Zsp2I ATGCAT 1 cut(s) 1205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.