Rroxscaffold_1G00024850

Transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000597
Physical Location & Seq
Reverse (-)
30914726 .. 30917816
3091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00024850.1

Sequence Viewer

Length: 1149 bp
ATGGTTCTACAAGGGTGGGGCTTGGATTGGGCTAGTGTGTTAGCTTGCTCTCTTGCAAGGACCTTGGGCCTGTTTTACTTTAGGCGAGAGGTGGGCTTTTTCCAGGTCCGCATACTCGGACCCAAATGGGGTCGCTATTTCGTTGGTCCAATTCAGTTTATGGTATGCTATGGAGCTGTTGTGGCTTGTACTCTTTTGGGAGGGCAATGCATGAAGGCAGTTTACATGCTGACAAACACAAATGGGAGCATGAAACTGTACGAGTTTGTGATCATATTTGGATGCTTCATGCTGATTTTGGCACAAATCCCATCTTTTCACTCACTAAGGCACATCAACCTTGTCTCCATGATCCTTTGCCTAGCCTATAGCGTTTGTGCTACTGCTGCTTGCATCTATATTGGAAATTCTTCAAAAGGACCACCCAAGGACTATTCTTTGAAGGGCAACACCGAGAATCAGATTTTTGGGATATTTAATGCCAATGCCATCATTGCTACGACATACGGCAATGGTATCATTCCAGAAATTCAGGCAACAATCGCAGCACCAGTGAAGGGAAAGATGTTCAAGGGATTGTGTGTTTGTTACACAATAGTCACAATGACTTTCTTCAGCGTTGCGATATCTGGCTATTGGGCATTTGGTAACCAATCTGAAGGCCTCATCCTTAGCAACTTCTTGTCCGATGGCAACCCTTTGGTGCCGAAGTGGTTCATTTTCATGACGAACATTTTCACCATATTCCAACTTTCCGCTGTTGGTGTGGTTTATCTGCAGCCCACAAATGAAGTACTAGAGAGAGCATTTGCAGACCCAACAAGGAAAGAATTTTCAGCTCGAAATGTGATCCCAAGGGTGATCTCTCGATCACTATCTGTCATCACAGCAACAACCGTAGCAGCAATGCTTCCATTTTTTGGGGACATCAATGCAGTTATTGGGGCTTTTGGTTTCATGCCCCTCGACTTCATCTTGCCTGTTGTCTTCTTCAACTTGACCTTTAAGCCATCAAAACGAAGCCTTGTTTTCTGGTTGAACACCACCATTGCTGTGGTTTTTTCAGTCATGGGGGTTTTAGCAGCGATTGCAGCTGTAAGACAAATTAGCTTGGATGCCAGTTCTTACAAGTTATTTGCGAATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

382

Amino Acids

41.97

Weight (kDa)

9.29

Isoelectric Point (pI)

29.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 37 - 368 7.2e-45 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08230 AT1G08230 AT1G08230 AT1G08230 AT1G08230
fragaria_vesca FvH4_3g30140 FvH4_7g06340 FvH4_7g06350 FvH4_7g06350
malus_domestica MD02G1244800.v1.1 MD03G1133300.v1.1 MD07G1072100.v1.1 MD07G1072300.v1.1 MD11G1155800.v1.1 MD11G1156000.v1.1
prunus_persica Prupe.2G090300_v2.0.a1 Prupe.2G090500_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1
pyrus_communis pycom02g21070 pycom03g08970 pycom07g05520
rosa_chinensis RchiOBHm_Chr1g0334311 RchiOBHm_Chr1g0334341 RchiOBHm_Chr1g0334351 RchiOBHm_Chr1g0334371 RchiOBHm_Chr1g0334381 RchiOBHm_Chr1g0334431 RchiOBHm_Chr5g0055491 RchiOBHm_Chr5g0055511
rosa_laevigata RLG00000029454 RLG00000029457 RLG00000029458 RLG00000029459 RLG00000029461 RLG00000034991 RLG00000034993
rosa_multiflora Rmu_sc0001673.1_g000036 Rmu_sc0001673.1_g000040 Rmu_sc0016880.1_g000002 Rmu_ssc0000047.1_g000014 Rmu_ssc0000047.1_g000015 Rmu_ssc0000047.1_g000016 Rmu_ssc0000047.1_g000023
rosa_roxburghii Rroxscaffold_1G00024820 Rroxscaffold_1G00024850 Rroxscaffold_1G00024860 Rroxscaffold_4G00316880 Rroxscaffold_4G00316900
rosa_rugosa Rorug01G0113300.1 Rorug01G0113400 Rorug01G0113500 Rorug05G0293200 Rorug05G0293200 Rorug05G0293400.1
rosa_samantha Rh1AG138200 Rh1AG138300 Rh1AG139000 Rh1BG104900 Rh1CG130400 Rh1CG130500 Rh1CG131000 Rh1DG142700 Rh1DG142800 Rh5AG362800 Rh5AG363000 Rh5BG375000 Rh5BG375200 Rh5CG396900 Rh5CG397100 Rh5DG388300 Rh5DG388400
rosa_wichuraiana Rw0G003720 Rw0G003730 Rw0G003740 Rw1G011440 Rw1G011450 Rw5G034150 Rw5G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 703
AccB7I CCANNNNNTGG 1 cut(s) 920
AciI CCGC 2 cut(s) 109, 756
AclWI GGATC 2 cut(s) 346, 844
AcsI RAATTY 3 cut(s) 406, 528, 830
AcuI CTGAAG 2 cut(s) 598, 678
AfaI GTAC 3 cut(s) 190, 260, 795
AfiI CCNNNNNNNGG 3 cut(s) 128, 557, 920
AgsI TTSAA 5 cut(s) 414, 442, 571, 994, 1039
AjnI CCWGG 1 cut(s) 102
AluBI AGCT 5 cut(s) 44, 176, 839, 1094, 1110
AluI AGCT 5 cut(s) 44, 176, 839, 1094, 1110
Alw26I GTCTC 1 cut(s) 349
AlwI GGATC 2 cut(s) 346, 844
AoxI GGCC 2 cut(s) 67, 661
ApeKI GCWGC 6 cut(s) 386, 545, 778, 902, 1082, 1091
ApoI RAATTY 3 cut(s) 406, 528, 830
Asp700I GAANNNNTTC 3 cut(s) 409, 713, 734
AspS9I GGNCC 6 cut(s) 60, 67, 106, 119, 146, 419
AsuHPI GGTGA 2 cut(s) 730, 871
AvaII GGWCC 5 cut(s) 60, 106, 119, 146, 419
BanI GGYRCC 1 cut(s) 703
BarI GAAGNNNNNNTAC 2 cut(s) 206, 238
BbsI GAAGAC 1 cut(s) 979
BbvI GCAGC 6 cut(s) 373, 557, 790, 914, 1094, 1103
BccI CCATC 4 cut(s) 319, 497, 683, 1018
BceAI ACGGC 1 cut(s) 523
BciT130I CCWGG 1 cut(s) 104
BclI TGATCA 1 cut(s) 270
BcoDI GTCTC 1 cut(s) 349
BfaI CTAG 3 cut(s) 33, 362, 797
BfmI CTRYAG 2 cut(s) 367, 776
BisI GCNGC 6 cut(s) 387, 546, 779, 903, 1083, 1092
BlsI GCNGC 6 cut(s) 388, 547, 780, 904, 1084, 1093
BmcAI AGTACT 1 cut(s) 795
Bme1390I CCNGG 1 cut(s) 104
Bme18I GGWCC 5 cut(s) 60, 106, 119, 146, 419
BmgT120I GGNCC 6 cut(s) 60, 67, 106, 119, 146, 419
BmiI GGNNCC 2 cut(s) 121, 705
BmrFI CCNGG 1 cut(s) 104
BmsI GCATC 3 cut(s) 272, 402, 1105
BpiI GAAGAC 1 cut(s) 979
Bpu10I CCTNAGC 1 cut(s) 671
BsaBI GATNNNNATC 1 cut(s) 874
BsaJI CCNNGG 3 cut(s) 63, 426, 854
BsaXI ACNNNNNCTCC 4 cut(s) 165, 195, 329, 359
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 557, 920
Bse1I ACTGG 2 cut(s) 551, 1119
Bse3DI GCAATG 5 cut(s) 212, 492, 517, 912, 1047
Bse8I GATNNNNATC 1 cut(s) 874
BseBI CCWGG 1 cut(s) 104
BseDI CCNNGG 3 cut(s) 63, 426, 854
BseGI GGATG 3 cut(s) 287, 666, 1120
BseJI GATNNNNATC 1 cut(s) 874
BseLI CCNNNNNNNGG 3 cut(s) 128, 557, 920
BseMI GCAATG 5 cut(s) 212, 492, 517, 912, 1047
BseNI ACTGG 2 cut(s) 551, 1119
BseXI GCAGC 6 cut(s) 373, 557, 790, 914, 1094, 1103
BshFI GGCC 2 cut(s) 69, 663
BshNI GGYRCC 1 cut(s) 703
BslFI GGGAC 1 cut(s) 938
BslI CCNNNNNNNGG 3 cut(s) 128, 557, 920
BsmAI GTCTC 1 cut(s) 349
BsmFI GGGAC 1 cut(s) 938
BsnI GGCC 2 cut(s) 69, 663
Bsp143I GATC 5 cut(s) 270, 351, 849, 861, 869
BspACI CCGC 2 cut(s) 109, 756
BspANI GGCC 2 cut(s) 69, 663
BspHI TCATGA 1 cut(s) 723
BspLI GGNNCC 2 cut(s) 121, 705
BspMAI CTGCAG 1 cut(s) 780
BspPI GGATC 2 cut(s) 346, 844
BspT107I GGYRCC 1 cut(s) 703
BsrDI GCAATG 5 cut(s) 212, 492, 517, 912, 1047
BsrI ACTGG 2 cut(s) 551, 1119
BssECI CCNNGG 3 cut(s) 63, 426, 854
BssMI GATC 5 cut(s) 270, 351, 849, 861, 869
BssT1I CCWWGG 3 cut(s) 63, 426, 854
Bst2UI CCWGG 1 cut(s) 104
Bst4CI ACNGT 2 cut(s) 258, 898
BstAPI GCANNNNNTGC 1 cut(s) 1088
BstC8I GCNNGC 2 cut(s) 46, 391
BstDEI CTNAG 2 cut(s) 326, 671
BstEII GGTNACC 1 cut(s) 647
BstF5I GGATG 3 cut(s) 287, 666, 1120
BstKTI GATC 5 cut(s) 273, 354, 852, 864, 872
BstMAI GTCTC 1 cut(s) 349
BstMBI GATC 5 cut(s) 270, 351, 849, 861, 869
BstMWI GCNNNNNNNGC 6 cut(s) 182, 386, 494, 542, 1088, 1091
BstNI CCWGG 1 cut(s) 104
BstNSI RCATGY 1 cut(s) 229
BstPI GGTNACC 1 cut(s) 647
BstSCI CCNGG 1 cut(s) 102
BstSFI CTRYAG 2 cut(s) 367, 776
BstV1I GCAGC 6 cut(s) 373, 557, 790, 914, 1094, 1103
BstV2I GAAGAC 1 cut(s) 979
BstXI CCANNNNNNTGG 1 cut(s) 1054
BsuRI GGCC 2 cut(s) 69, 663
BtsCI GGATG 3 cut(s) 287, 666, 1120
BtsIMutI CAGTG 1 cut(s) 558
Cac8I GCNNGC 2 cut(s) 46, 391
CciI TCATGA 1 cut(s) 723
Cfr13I GGNCC 6 cut(s) 60, 67, 106, 119, 146, 419
Csp6I GTAC 3 cut(s) 189, 259, 794
CviAII CATG 8 cut(s) 211, 226, 250, 289, 349, 724, 958, 1069
CviQI GTAC 3 cut(s) 189, 259, 794
DdeI CTNAG 2 cut(s) 326, 671
DpnI GATC 5 cut(s) 272, 353, 851, 863, 871
DpnII GATC 5 cut(s) 270, 351, 849, 861, 869
Eco130I CCWWGG 3 cut(s) 63, 426, 854
Eco147I AGGCCT 1 cut(s) 663
Eco32I GATATC 1 cut(s) 627
Eco47I GGWCC 5 cut(s) 60, 106, 119, 146, 419
Eco57I CTGAAG 2 cut(s) 598, 678
Eco91I GGTNACC 1 cut(s) 647
EcoO109I RGGNCCY 1 cut(s) 60
EcoO65I GGTNACC 1 cut(s) 647
EcoRII CCWGG 1 cut(s) 102
EcoRV GATATC 1 cut(s) 627
EcoT14I CCWWGG 3 cut(s) 63, 426, 854
EcoT22I ATGCAT 1 cut(s) 212
ErhI CCWWGG 3 cut(s) 63, 426, 854
FaeI CATG 8 cut(s) 214, 229, 253, 292, 352, 727, 961, 1072
FaqI GGGAC 1 cut(s) 938
FatI CATG 8 cut(s) 210, 225, 249, 288, 348, 723, 957, 1068
FbaI TGATCA 1 cut(s) 270
Fnu4HI GCNGC 6 cut(s) 387, 546, 779, 903, 1083, 1092
FokI GGATG 3 cut(s) 294, 653, 1127
Fsp4HI GCNGC 6 cut(s) 387, 546, 779, 903, 1083, 1092
FspBI CTAG 3 cut(s) 33, 362, 797
GluI GCNGC 6 cut(s) 387, 546, 779, 903, 1083, 1092
HaeIII GGCC 2 cut(s) 69, 663
Hin1II CATG 8 cut(s) 214, 229, 253, 292, 352, 727, 961, 1072
HinfI GANTC 1 cut(s) 457
HphI GGTGA 2 cut(s) 730, 871
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 4 cut(s) 119, 462, 658, 688
Hpy188III TCNNGA 3 cut(s) 524, 724, 867
Hpy8I GTNNAC 1 cut(s) 223
HpyAV CCTTC 4 cut(s) 208, 436, 550, 653
HpyCH4III ACNGT 2 cut(s) 258, 898
HpyCH4V TGCA 7 cut(s) 56, 210, 393, 778, 812, 935, 1091
HpyF10VI GCNNNNNNNGC 6 cut(s) 182, 386, 494, 542, 1088, 1091
HpyF3I CTNAG 2 cut(s) 326, 671
Hsp92II CATG 8 cut(s) 214, 229, 253, 292, 352, 727, 961, 1072
Ksp22I TGATCA 1 cut(s) 270
Kzo9I GATC 5 cut(s) 270, 351, 849, 861, 869
LmnI GCTCC 2 cut(s) 173, 246
Lsp1109I GCAGC 6 cut(s) 373, 557, 790, 914, 1094, 1103
LweI GCATC 3 cut(s) 272, 402, 1105
MaeI CTAG 3 cut(s) 33, 362, 797
MaeIII GTNAC 3 cut(s) 587, 598, 647
MalI GATC 5 cut(s) 272, 353, 851, 863, 871
MboI GATC 5 cut(s) 270, 351, 849, 861, 869
MboII GAAGA 4 cut(s) 402, 604, 979, 982
MluCI AATT 5 cut(s) 150, 406, 528, 830, 1104
MmeI TCCRAC 1 cut(s) 772
MnlI CCTC 4 cut(s) 82, 194, 674, 974
Mph1103I ATGCAT 1 cut(s) 212
MroXI GAANNNNTTC 3 cut(s) 409, 713, 734
MseI TTAA 2 cut(s) 477, 1005
MslI CAYNNNNRTG 2 cut(s) 722, 1052
MspA1I CMGCKG 2 cut(s) 758, 1094
MspR9I CCNGG 1 cut(s) 104
MvaI CCWGG 1 cut(s) 104
MwoI GCNNNNNNNGC 6 cut(s) 182, 386, 494, 542, 1088, 1091
NdeII GATC 5 cut(s) 270, 351, 849, 861, 869
NlaIII CATG 8 cut(s) 214, 229, 253, 292, 352, 727, 961, 1072
NlaIV GGNNCC 2 cut(s) 121, 705
NmuCI GTSAC 1 cut(s) 598
NsiI ATGCAT 1 cut(s) 212
NspI RCATGY 1 cut(s) 229
PagI TCATGA 1 cut(s) 723
PceI AGGCCT 1 cut(s) 663
PdmI GAANNNNTTC 3 cut(s) 409, 713, 734
PfeI GAWTC 1 cut(s) 457
PflMI CCANNNNNTGG 1 cut(s) 920
PkrI GCNGC 6 cut(s) 388, 547, 780, 904, 1084, 1093
PpuMI RGGWCCY 1 cut(s) 60
Psp5II RGGWCCY 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 102
PspEI GGTNACC 1 cut(s) 647
PspGI CCWGG 1 cut(s) 102
PspN4I GGNNCC 2 cut(s) 121, 705
PspPI GGNCC 6 cut(s) 60, 67, 106, 119, 146, 419
PspPPI RGGWCCY 1 cut(s) 60
PstI CTGCAG 1 cut(s) 780
PvuII CAGCTG 1 cut(s) 1094
RsaI GTAC 3 cut(s) 190, 260, 795
RsaNI GTAC 3 cut(s) 189, 259, 794
RseI CAYNNNNRTG 2 cut(s) 722, 1052
SaqAI TTAA 2 cut(s) 477, 1005
SatI GCNGC 6 cut(s) 387, 546, 779, 903, 1083, 1092
Sau3AI GATC 5 cut(s) 270, 351, 849, 861, 869
Sau96I GGNCC 6 cut(s) 60, 67, 106, 119, 146, 419
ScaI AGTACT 1 cut(s) 795
ScrFI CCNGG 1 cut(s) 104
SfaNI GCATC 3 cut(s) 272, 402, 1105
SfcI CTRYAG 2 cut(s) 367, 776
SinI GGWCC 5 cut(s) 60, 106, 119, 146, 419
SmiMI CAYNNNNRTG 2 cut(s) 722, 1052
Sse9I AATT 5 cut(s) 150, 406, 528, 830, 1104
SseBI AGGCCT 1 cut(s) 663
SsiI CCGC 2 cut(s) 109, 756
SspMI CTAG 3 cut(s) 33, 362, 797
StuI AGGCCT 1 cut(s) 663
StyD4I CCNGG 1 cut(s) 102
StyI CCWWGG 3 cut(s) 63, 426, 854
TaaI ACNGT 2 cut(s) 258, 898
TaqI TCGA 3 cut(s) 841, 868, 966
TasI AATT 5 cut(s) 150, 406, 528, 830, 1104
TatI WGTACW 2 cut(s) 188, 793
TfiI GAWTC 1 cut(s) 457
Tru1I TTAA 2 cut(s) 477, 1005
Tru9I TTAA 2 cut(s) 477, 1005
TscAI CASTG 1 cut(s) 558
TseFI GTSAC 1 cut(s) 598
TseI GCWGC 6 cut(s) 386, 545, 778, 902, 1082, 1091
Tsp45I GTSAC 1 cut(s) 598
TspDTI ATGAA 8 cut(s) 227, 266, 277, 706, 712, 804, 946, 961
TspRI CASTG 1 cut(s) 558
Van91I CCANNNNNTGG 1 cut(s) 920
VpaK11BI GGWCC 5 cut(s) 60, 106, 119, 146, 419
XapI RAATTY 3 cut(s) 406, 528, 830
XceI RCATGY 1 cut(s) 229
XcmI CCANNNNNNNNNTGG 1 cut(s) 1051
XmnI GAANNNNTTC 3 cut(s) 409, 713, 734
XspI CTAG 3 cut(s) 33, 362, 797
ZrmI AGTACT 1 cut(s) 795
Zsp2I ATGCAT 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.