Rorug01G0113400

GABA transporter 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000597
Physical Location & Seq
Reverse (-)
20127827 .. 20128635
809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0113400.1

Sequence Viewer

Length: 720 bp
ATGGAACCACGAACTCTGCAACTGATGGAGCTACAAACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACAGATTTCTGGCGAAGCCGTGCCAGGTGGGTTCCTACTCCAGATCAAATAAGGATCCTCAAGGATCTTTACTACGACAAGGGAGTTAAGCGCCCAACTACAGAGCATATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGACATGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAATGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATTGATCTCAATTTTGGGCCAGCTGGTTCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTAATCTCAACTTTGGTTCCACTGATTCTACTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGATTGAAACCCTTCCATTGTTCCCCATGCATGGTGAGGACATCTTGGGCATCATGAAGACTACTTCCGAGAGAGGTAGCGGTTATGGCGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTCAACTCCTACAGAGATGCAGACATGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

239

Amino Acids

25.95

Weight (kDa)

5.34

Isoelectric Point (pI)

51.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 38 - 99 1.1e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08230 AT1G08230 AT1G08230 AT1G08230 AT1G08230
fragaria_vesca FvH4_3g30140 FvH4_7g06340 FvH4_7g06350 FvH4_7g06350
malus_domestica MD02G1244800.v1.1 MD03G1133300.v1.1 MD07G1072100.v1.1 MD07G1072300.v1.1 MD11G1155800.v1.1 MD11G1156000.v1.1
prunus_persica Prupe.2G090300_v2.0.a1 Prupe.2G090500_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1
pyrus_communis pycom02g21070 pycom03g08970 pycom07g05520
rosa_chinensis RchiOBHm_Chr1g0334311 RchiOBHm_Chr1g0334341 RchiOBHm_Chr1g0334351 RchiOBHm_Chr1g0334371 RchiOBHm_Chr1g0334381 RchiOBHm_Chr1g0334431 RchiOBHm_Chr5g0055491 RchiOBHm_Chr5g0055511
rosa_laevigata RLG00000029454 RLG00000029457 RLG00000029458 RLG00000029459 RLG00000029461 RLG00000034991 RLG00000034993
rosa_multiflora Rmu_sc0001673.1_g000036 Rmu_sc0001673.1_g000040 Rmu_sc0016880.1_g000002 Rmu_ssc0000047.1_g000014 Rmu_ssc0000047.1_g000015 Rmu_ssc0000047.1_g000016 Rmu_ssc0000047.1_g000023
rosa_roxburghii Rroxscaffold_1G00024820 Rroxscaffold_1G00024850 Rroxscaffold_1G00024860 Rroxscaffold_4G00316880 Rroxscaffold_4G00316900
rosa_rugosa Rorug01G0113300.1 Rorug01G0113400 Rorug01G0113500 Rorug05G0293200 Rorug05G0293200 Rorug05G0293400.1
rosa_samantha Rh1AG138200 Rh1AG138300 Rh1AG139000 Rh1BG104900 Rh1CG130400 Rh1CG130500 Rh1CG131000 Rh1DG142700 Rh1DG142800 Rh5AG362800 Rh5AG363000 Rh5BG375000 Rh5BG375200 Rh5CG396900 Rh5CG397100 Rh5DG388300 Rh5DG388400
rosa_wichuraiana Rw0G003720 Rw0G003730 Rw0G003740 Rw1G011440 Rw1G011450 Rw5G034150 Rw5G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 437
AciI CCGC 2 cut(s) 648, 657
AfaI GTAC 1 cut(s) 352
AfiI CCNNNNNNNGG 3 cut(s) 353, 437, 599
AflIII ACRYGT 1 cut(s) 238
AgsI TTSAA 1 cut(s) 575
AhlI ACTAGT 2 cut(s) 338, 467
AjnI CCWGG 3 cut(s) 116, 346, 564
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AloI GAACNNNNNNTCC 2 cut(s) 328, 360
AluBI AGCT 5 cut(s) 31, 223, 386, 434, 682
AluI AGCT 5 cut(s) 31, 223, 386, 434, 682
Alw21I GWGCWC 1 cut(s) 684
Alw26I GTCTC 1 cut(s) 221
Ama87I CYCGRG 1 cut(s) 285
AoxI GGCC 2 cut(s) 380, 428
ApeKI GCWGC 2 cut(s) 74, 317
ArsI GACNNNNNNTTYG 4 cut(s) 407, 439, 440, 472
AseI ATTAAT 1 cut(s) 495
Asp700I GAANNNNTTC 2 cut(s) 340, 579
AspLEI GCGC 1 cut(s) 186
AspS9I GGNCC 3 cut(s) 380, 428, 462
AsuC2I CCSGG 1 cut(s) 79
AsuHPI GGTGA 2 cut(s) 554, 614
AvaI CYCGRG 1 cut(s) 285
AvaII GGWCC 1 cut(s) 462
BaeGI GKGCMC 1 cut(s) 330
BamHI GGATCC 4 cut(s) 147, 359, 407, 440
BanII GRGCYC 2 cut(s) 286, 684
BauI CACGAG 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 632
Bbv12I GWGCWC 1 cut(s) 684
BbvI GCAGC 2 cut(s) 86, 304
BccI CCATC 4 cut(s) 19, 50, 419, 476
BceAI ACGGC 1 cut(s) 96
BciT130I CCWGG 3 cut(s) 118, 348, 566
BcnI CCSGG 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 221
BcuI ACTAGT 2 cut(s) 338, 467
BfaI CTAG 2 cut(s) 339, 468
BfmI CTRYAG 2 cut(s) 192, 697
BfoI RGCGCY 1 cut(s) 187
BglII AGATCT 1 cut(s) 210
BisI GCNGC 2 cut(s) 75, 318
BlpI GCTNAGC 1 cut(s) 683
BlsI GCNGC 2 cut(s) 76, 319
Bme1390I CCNGG 4 cut(s) 79, 118, 348, 566
Bme18I GGWCC 1 cut(s) 462
BmeT110I CYCGRG 1 cut(s) 285
BmgT120I GGNCC 3 cut(s) 380, 428, 462
BmiI GGNNCC 9 cut(s) 6, 126, 149, 269, 361, 409, 442, 463, 511
BmrFI CCNGG 4 cut(s) 79, 118, 348, 566
BmsI GCATC 2 cut(s) 627, 694
BpiI GAAGAC 1 cut(s) 632
BpmI CTGGAG 3 cut(s) 117, 203, 546
Bpu1102I GCTNAGC 1 cut(s) 683
BpuEI CTTGAG 3 cut(s) 137, 306, 698
BpuMI CCSGG 1 cut(s) 79
BsaJI CCNNGG 1 cut(s) 330
BsaXI ACNNNNNCTCC 2 cut(s) 328, 358
Bsc4I CCNNNNNNNGG 3 cut(s) 353, 437, 599
Bse1I ACTGG 4 cut(s) 229, 358, 400, 529
BseBI CCWGG 3 cut(s) 118, 348, 566
BseDI CCNNGG 1 cut(s) 330
BseGI GGATG 2 cut(s) 61, 536
BseLI CCNNNNNNNGG 3 cut(s) 353, 437, 599
BseMII CTCAG 1 cut(s) 697
BseNI ACTGG 4 cut(s) 229, 358, 400, 529
BseRI GAGGAG 2 cut(s) 567, 570
BseSI GKGCMC 1 cut(s) 330
BseXI GCAGC 2 cut(s) 86, 304
BseYI CCCAGC 1 cut(s) 39
BshFI GGCC 2 cut(s) 382, 430
BsiHKAI GWGCWC 1 cut(s) 684
BsiHKCI CYCGRG 1 cut(s) 285
BsiSI CCGG 1 cut(s) 78
BslI CCNNNNNNNGG 3 cut(s) 353, 437, 599
BsmAI GTCTC 1 cut(s) 221
BsnI GGCC 2 cut(s) 382, 430
BsoBI CYCGRG 1 cut(s) 285
Bsp1286I GDGCHC 3 cut(s) 286, 330, 684
Bsp1720I GCTNAGC 1 cut(s) 683
Bsp19I CCATGG 1 cut(s) 330
BspACI CCGC 2 cut(s) 648, 657
BspANI GGCC 2 cut(s) 382, 430
BspCNI CTCAG 1 cut(s) 696
BspHI TCATGA 1 cut(s) 621
BspLI GGNNCC 9 cut(s) 6, 126, 149, 269, 361, 409, 442, 463, 511
BsrI ACTGG 4 cut(s) 229, 358, 400, 529
BssECI CCNNGG 1 cut(s) 330
BssSI CACGAG 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 330
Bst2BI CACGAG 1 cut(s) 206
Bst2UI CCWGG 3 cut(s) 118, 348, 566
Bst6I CTCTTC 1 cut(s) 296
BstC8I GCNNGC 2 cut(s) 384, 432
BstDEI CTNAG 2 cut(s) 683, 717
BstDSI CCRYGG 1 cut(s) 330
BstF5I GGATG 2 cut(s) 61, 536
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 1 cut(s) 186
BstMAI GTCTC 1 cut(s) 221
BstMWI GCNNNNNNNGC 2 cut(s) 654, 713
BstNI CCWGG 3 cut(s) 118, 348, 566
BstNSI RCATGY 1 cut(s) 242
BstSCI CCNGG 4 cut(s) 77, 116, 346, 564
BstSFI CTRYAG 2 cut(s) 192, 697
BstSLI GKGCMC 1 cut(s) 330
BstV1I GCAGC 2 cut(s) 86, 304
BstV2I GAAGAC 1 cut(s) 632
BstX2I RGATCY 7 cut(s) 147, 157, 210, 359, 407, 440, 488
BstYI RGATCY 7 cut(s) 147, 157, 210, 359, 407, 440, 488
BsuRI GGCC 2 cut(s) 382, 430
BtgI CCRYGG 1 cut(s) 330
BtsCI GGATG 2 cut(s) 61, 536
BtsIMutI CAGTG 1 cut(s) 513
Cac8I GCNNGC 2 cut(s) 384, 432
CciI TCATGA 1 cut(s) 621
CfoI GCGC 1 cut(s) 186
Cfr13I GGNCC 3 cut(s) 380, 428, 462
Csp6I GTAC 1 cut(s) 351
CviAII CATG 6 cut(s) 239, 331, 595, 599, 622, 712
CviQI GTAC 1 cut(s) 351
DdeI CTNAG 2 cut(s) 683, 717
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
Ecl136II GAGCTC 1 cut(s) 682
Eco130I CCWWGG 1 cut(s) 330
Eco24I GRGCYC 2 cut(s) 286, 684
Eco47I GGWCC 1 cut(s) 462
Eco53kI GAGCTC 1 cut(s) 682
Eco88I CYCGRG 1 cut(s) 285
EcoICRI GAGCTC 1 cut(s) 682
EcoRII CCWGG 3 cut(s) 116, 346, 564
EcoT14I CCWWGG 1 cut(s) 330
EcoT22I ATGCAT 1 cut(s) 600
EcoT38I GRGCYC 2 cut(s) 286, 684
ErhI CCWWGG 1 cut(s) 330
FaeI CATG 6 cut(s) 242, 334, 598, 602, 625, 715
FaiI YATR 9 cut(s) 201, 234, 240, 332, 596, 600, 623, 654, 713
FatI CATG 6 cut(s) 238, 330, 594, 598, 621, 711
Fnu4HI GCNGC 2 cut(s) 75, 318
FokI GGATG 2 cut(s) 68, 523
FriOI GRGCYC 2 cut(s) 286, 684
Fsp4HI GCNGC 2 cut(s) 75, 318
FspBI CTAG 2 cut(s) 339, 468
GlaI GCGC 1 cut(s) 185
GluI GCNGC 2 cut(s) 75, 318
GsaI CCCAGC 1 cut(s) 43
GsuI CTGGAG 3 cut(s) 117, 203, 546
HaeII RGCGCY 1 cut(s) 187
HaeIII GGCC 2 cut(s) 382, 430
HapII CCGG 1 cut(s) 78
HhaI GCGC 1 cut(s) 186
Hin1II CATG 6 cut(s) 242, 334, 598, 602, 625, 715
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HinfI GANTC 1 cut(s) 518
HpaII CCGG 1 cut(s) 78
HphI GGTGA 2 cut(s) 554, 614
Hpy166II GTNNAC 1 cut(s) 465
Hpy188I TCNGA 1 cut(s) 637
Hpy188III TCNNGA 5 cut(s) 134, 206, 271, 287, 622
Hpy8I GTNNAC 1 cut(s) 465
HpyAV CCTTC 1 cut(s) 590
HpyCH4V TGCA 5 cut(s) 19, 309, 544, 598, 707
HpyF10VI GCNNNNNNNGC 2 cut(s) 654, 713
HpyF3I CTNAG 2 cut(s) 683, 717
Hsp92II CATG 6 cut(s) 242, 334, 598, 602, 625, 715
HspAI GCGC 1 cut(s) 184
LmnI GCTCC 1 cut(s) 28
Lsp1109I GCAGC 2 cut(s) 86, 304
LweI GCATC 2 cut(s) 627, 694
MaeI CTAG 2 cut(s) 339, 468
MboII GAAGA 2 cut(s) 313, 637
MflI RGATCY 7 cut(s) 147, 157, 210, 359, 407, 440, 488
MhlI GDGCHC 3 cut(s) 286, 330, 684
MluCI AATT 3 cut(s) 373, 421, 454
Mph1103I ATGCAT 1 cut(s) 600
MroXI GAANNNNTTC 2 cut(s) 340, 579
MseI TTAA 2 cut(s) 180, 495
MspA1I CMGCKG 3 cut(s) 223, 386, 434
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 4 cut(s) 79, 118, 348, 566
MvaI CCWGG 3 cut(s) 118, 348, 566
MwoI GCNNNNNNNGC 2 cut(s) 654, 713
NciI CCSGG 1 cut(s) 79
NcoI CCATGG 1 cut(s) 330
NlaIII CATG 6 cut(s) 242, 334, 598, 602, 625, 715
NlaIV GGNNCC 9 cut(s) 6, 126, 149, 269, 361, 409, 442, 463, 511
NsiI ATGCAT 1 cut(s) 600
NspI RCATGY 1 cut(s) 242
PaeR7I CTCGAG 1 cut(s) 285
PagI TCATGA 1 cut(s) 621
PciI ACATGT 1 cut(s) 238
PdmI GAANNNNTTC 2 cut(s) 340, 579
PfeI GAWTC 1 cut(s) 518
PflMI CCANNNNNTGG 1 cut(s) 437
PkrI GCNGC 2 cut(s) 76, 319
PscI ACATGT 1 cut(s) 238
PshBI ATTAAT 1 cut(s) 495
Psp124BI GAGCTC 1 cut(s) 684
Psp6I CCWGG 3 cut(s) 116, 346, 564
PspFI CCCAGC 1 cut(s) 39
PspGI CCWGG 3 cut(s) 116, 346, 564
PspN4I GGNNCC 9 cut(s) 6, 126, 149, 269, 361, 409, 442, 463, 511
PspPI GGNCC 3 cut(s) 380, 428, 462
PsuI RGATCY 7 cut(s) 147, 157, 210, 359, 407, 440, 488
PvuII CAGCTG 3 cut(s) 223, 386, 434
RsaI GTAC 1 cut(s) 352
RsaNI GTAC 1 cut(s) 351
SacI GAGCTC 1 cut(s) 684
SaqAI TTAA 2 cut(s) 180, 495
SatI GCNGC 2 cut(s) 75, 318
Sau96I GGNCC 3 cut(s) 380, 428, 462
ScrFI CCNGG 4 cut(s) 79, 118, 348, 566
SduI GDGCHC 3 cut(s) 286, 330, 684
SetI ASST 8 cut(s) 33, 122, 225, 308, 388, 436, 646, 684
SfaNI GCATC 2 cut(s) 627, 694
SfcI CTRYAG 2 cut(s) 192, 697
Sfr274I CTCGAG 1 cut(s) 285
SinI GGWCC 1 cut(s) 462
SlaI CTCGAG 1 cut(s) 285
SmlI CTYRAG 4 cut(s) 152, 285, 321, 677
SmoI CTYRAG 4 cut(s) 152, 285, 321, 677
SpeI ACTAGT 2 cut(s) 338, 467
Sse9I AATT 3 cut(s) 373, 421, 454
SsiI CCGC 2 cut(s) 648, 657
SspMI CTAG 2 cut(s) 339, 468
SstI GAGCTC 1 cut(s) 684
StyD4I CCNGG 4 cut(s) 77, 116, 346, 564
StyI CCWWGG 1 cut(s) 330
TaqI TCGA 3 cut(s) 51, 286, 414
TasI AATT 3 cut(s) 373, 421, 454
TfiI GAWTC 1 cut(s) 518
Tru1I TTAA 2 cut(s) 180, 495
Tru9I TTAA 2 cut(s) 180, 495
TscAI CASTG 1 cut(s) 520
TseI GCWGC 2 cut(s) 74, 317
TspDTI ATGAA 2 cut(s) 314, 638
TspRI CASTG 1 cut(s) 520
Van91I CCANNNNNTGG 1 cut(s) 437
VpaK11BI GGWCC 1 cut(s) 462
VspI ATTAAT 1 cut(s) 495
XceI RCATGY 1 cut(s) 242
XhoI CTCGAG 1 cut(s) 285
XmnI GAANNNNTTC 2 cut(s) 340, 579
XspI CTAG 2 cut(s) 339, 468
Zsp2I ATGCAT 1 cut(s) 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.