MD07G1072100.v1.1

GABA transporter 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000597
Physical Location & Seq
Forward (+)
6824513 .. 6827647
3135 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1072100.v1.1.491

Sequence Viewer

Length: 1383 bp
ATGGAGTCAGTTCTTCCCAGTTCAAATACTGATTTATCAGCAGAAAATAAGGAAGATGAAGAAGTCAACATTTCAAAGGAGCTTGATGCTGGAGCTTTATTTGTGCTCAAATCCAGAGGGTCATGGTTGCATTGTGGATATCACCTGACAACTTCAATTGTAGCCCCTGCCCTTCTAAGTCTTCCCTATGCACTTTCCTTGATGGGTTGGTTTGCTGGGGCTTTATGCCTCACCATTTCAGCTCTTGTAACGTTCTACTCCTACAACCTTCTGTCCTTGGTTTTAGAACACCATGACCAGCTTGGCATGCGCCAGCTTCGATTCCGAGACATGGCCAGAGATATTTTGGGACCAGGGTGGGGAAGATACTTTGTTGGTCCAATTCAATTTGGCTTGTGCTATGGTGCAGTTATAGCTTGCATTCTTCTGGGAGGGCAGAGCCTTAAGTATATATATTTGCTTTCTAGTTCAAGACCAGAAGCCATGCAACTCTACCAATTTGTTATTATTTTTGGTGTCCTGATGCTGGTGTTGGCACAAATTCCATCCTTCCACTCCTTGAGGCATATCAACCTTGTCTCTCTAATCCTTTGTCTTGCATATAGCATCTGTGCCACAGCTGGTTCCGTATATATCGGAAATTCGACTAATGCTCCTAGGAAGGACTACTCTTTAAATGGAAGTGGACAGAATCGTGTTTTTGGATCCTTCAACGCTATTTCAATCATCGCAACCACGTATGGAAATGGCATTATTCCAGAAATACAGGCAACAATAGCACCTCCAGTTAAAGGGAAAATGTTCAAAGGATTATGCGTATGCTATGCTGTTGTACTTTCGACATTTTTCAGTGTTGGTATCTCGGGTTATTGGGCGTTTGGAAATCAGGCCAAAGGAACAATTCTGCTCAATTTTTTAGTTGATGGAAAGCCTCTGTTGCCAACTTGGGTTCTATTGATGACCAATGTTTTCACCTTCTTGCAAGTATCAGCTGTTAGTGTGGTTTACTTACAACCAACAAATGAAGTACTTGAACGCAAGTTTGCGAATGCAAAGGTTGATCAATTCTCTGTTCGCAATGTTGTGCCAAGGTTGGTTTATCGATCTCTGTCTGTGGTCATAGCCACAACTGTTGCAGCTATGTTTCCATTCTTTGGCGACATCAACGCTCTGATTGGAGCATTTGGATGCATTCCTCTGGACTTCATTTTGCCAATGGTGTTCTACAATGTTGTGTTCAAGCCCTCCAAGTACAGCTTACTTTTCTGGGGAAACACAATCATTGCCACAACATTTTCTGCTCTAGGACTGTTGGGTGCAATATCTTCAATCCGACAGATCGTTCTTGATTCTAACACGTACAGTTTTTTTGCTAACATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

461

Amino Acids

50.35

Weight (kDa)

8.75

Isoelectric Point (pI)

27.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 39 - 448 2.5e-67 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08230 AT1G08230 AT1G08230 AT1G08230 AT1G08230
fragaria_vesca FvH4_3g30140 FvH4_7g06340 FvH4_7g06350 FvH4_7g06350
malus_domestica MD02G1244800.v1.1 MD03G1133300.v1.1 MD07G1072100.v1.1 MD07G1072300.v1.1 MD11G1155800.v1.1 MD11G1156000.v1.1
prunus_persica Prupe.2G090300_v2.0.a1 Prupe.2G090500_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1
pyrus_communis pycom02g21070 pycom03g08970 pycom07g05520
rosa_chinensis RchiOBHm_Chr1g0334311 RchiOBHm_Chr1g0334341 RchiOBHm_Chr1g0334351 RchiOBHm_Chr1g0334371 RchiOBHm_Chr1g0334381 RchiOBHm_Chr1g0334431 RchiOBHm_Chr5g0055491 RchiOBHm_Chr5g0055511
rosa_laevigata RLG00000029454 RLG00000029457 RLG00000029458 RLG00000029459 RLG00000029461 RLG00000034991 RLG00000034993
rosa_multiflora Rmu_sc0001673.1_g000036 Rmu_sc0001673.1_g000040 Rmu_sc0016880.1_g000002 Rmu_ssc0000047.1_g000014 Rmu_ssc0000047.1_g000015 Rmu_ssc0000047.1_g000016 Rmu_ssc0000047.1_g000023
rosa_roxburghii Rroxscaffold_1G00024820 Rroxscaffold_1G00024850 Rroxscaffold_1G00024860 Rroxscaffold_4G00316880 Rroxscaffold_4G00316900
rosa_rugosa Rorug01G0113300.1 Rorug01G0113400 Rorug01G0113500 Rorug05G0293200 Rorug05G0293200 Rorug05G0293400.1
rosa_samantha Rh1AG138200 Rh1AG138300 Rh1AG139000 Rh1BG104900 Rh1CG130400 Rh1CG130500 Rh1CG131000 Rh1DG142700 Rh1DG142800 Rh5AG362800 Rh5AG363000 Rh5BG375000 Rh5BG375200 Rh5CG396900 Rh5CG397100 Rh5DG388300 Rh5DG388400
rosa_wichuraiana Rw0G003720 Rw0G003730 Rw0G003740 Rw1G011440 Rw1G011450 Rw5G034150 Rw5G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1154
AclI AACGTT 1 cut(s) 251
AclWI GGATC 2 cut(s) 699, 712
AcoI YGGCCR 1 cut(s) 333
AcsI RAATTY 2 cut(s) 540, 640
AfaI GTAC 4 cut(s) 834, 1029, 1253, 1361
AfiI CCNNNNNNNGG 5 cut(s) 331, 359, 526, 791, 1154
AflII CTTAAG 1 cut(s) 443
AflIII ACRYGT 1 cut(s) 1356
AjnI CCWGG 1 cut(s) 352
Alw21I GWGCWC 1 cut(s) 108
Alw26I GTCTC 2 cut(s) 321, 583
AlwI GGATC 2 cut(s) 699, 712
Ama87I CYCGRG 1 cut(s) 862
AoxI GGCC 2 cut(s) 333, 888
ApeKI GCWGC 1 cut(s) 1136
ApoI RAATTY 2 cut(s) 540, 640
Asp700I GAANNNNTTC 1 cut(s) 800
AspA2I CCTAGG 1 cut(s) 656
AspLEI GCGC 1 cut(s) 312
AspS9I GGNCC 2 cut(s) 350, 377
AsuHPI GGTGA 3 cut(s) 134, 223, 964
AvaI CYCGRG 1 cut(s) 862
AvaII GGWCC 2 cut(s) 350, 377
AvrII CCTAGG 1 cut(s) 656
BalI TGGCCA 1 cut(s) 335
BamHI GGATCC 1 cut(s) 704
BbsI GAAGAC 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 1148
BccI CCATC 3 cut(s) 196, 553, 917
BciT130I CCWGG 1 cut(s) 354
BclI TGATCA 1 cut(s) 1060
BcoDI GTCTC 2 cut(s) 321, 583
BfaI CTAG 3 cut(s) 465, 657, 1304
BfrI CTTAAG 1 cut(s) 443
BisI GCNGC 1 cut(s) 1137
BlnI CCTAGG 1 cut(s) 656
BlsI GCNGC 1 cut(s) 1138
BmcAI AGTACT 1 cut(s) 1029
Bme1390I CCNGG 1 cut(s) 354
Bme18I GGWCC 2 cut(s) 350, 377
BmeT110I CYCGRG 1 cut(s) 862
BmgT120I GGNCC 2 cut(s) 350, 377
BmiI GGNNCC 3 cut(s) 351, 625, 706
BmrFI CCNGG 1 cut(s) 354
BmrI ACTGGG 1 cut(s) 12
BmsI GCATC 4 cut(s) 76, 513, 615, 1178
BmuI ACTGGG 1 cut(s) 12
BpiI GAAGAC 1 cut(s) 173
BpmI CTGGAG 2 cut(s) 111, 768
BpuEI CTTGAG 1 cut(s) 580
Bsa29I ATCGAT 1 cut(s) 1102
BsaAI YACGTR 2 cut(s) 738, 1359
BsaJI CCNNGG 4 cut(s) 276, 353, 656, 1088
BsaXI ACNNNNNCTCC 2 cut(s) 637, 667
Bsc4I CCNNNNNNNGG 5 cut(s) 331, 359, 526, 791, 1154
Bse1I ACTGG 2 cut(s) 18, 785
Bse3DI GCAATG 2 cut(s) 1084, 1281
BseBI CCWGG 1 cut(s) 354
BseCI ATCGAT 1 cut(s) 1102
BseDI CCNNGG 4 cut(s) 276, 353, 656, 1088
BseGI GGATG 2 cut(s) 545, 1193
BseLI CCNNNNNNNGG 5 cut(s) 331, 359, 526, 791, 1154
BseMI GCAATG 2 cut(s) 1084, 1281
BseNI ACTGG 2 cut(s) 18, 785
BseXI GCAGC 1 cut(s) 1148
BseYI CCCAGC 1 cut(s) 215
BsgI GTGCAG 1 cut(s) 426
BshFI GGCC 2 cut(s) 335, 890
BshVI ATCGAT 1 cut(s) 1102
BsiHKAI GWGCWC 1 cut(s) 108
BsiHKCI CYCGRG 1 cut(s) 862
BslFI GGGAC 1 cut(s) 363
BslI CCNNNNNNNGG 5 cut(s) 331, 359, 526, 791, 1154
BsmAI GTCTC 2 cut(s) 321, 583
BsmFI GGGAC 1 cut(s) 363
BsmI GAATGC 3 cut(s) 420, 1054, 1191
BsnI GGCC 2 cut(s) 335, 890
BsoBI CYCGRG 1 cut(s) 862
Bsp1286I GDGCHC 1 cut(s) 108
Bsp143I GATC 4 cut(s) 704, 1060, 1103, 1338
BspANI GGCC 2 cut(s) 335, 890
BspDI ATCGAT 1 cut(s) 1102
BspLI GGNNCC 3 cut(s) 351, 625, 706
BspPI GGATC 2 cut(s) 699, 712
BspTI CTTAAG 1 cut(s) 443
BsrDI GCAATG 2 cut(s) 1084, 1281
BsrI ACTGG 2 cut(s) 18, 785
BssECI CCNNGG 4 cut(s) 276, 353, 656, 1088
BssMI GATC 4 cut(s) 704, 1060, 1103, 1338
BssT1I CCWWGG 3 cut(s) 276, 656, 1088
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 3 cut(s) 1132, 1311, 1364
BstAFI CTTAAG 1 cut(s) 443
BstBAI YACGTR 2 cut(s) 738, 1359
BstC8I GCNNGC 3 cut(s) 308, 314, 418
BstDEI CTNAG 1 cut(s) 176
BstF5I GGATG 2 cut(s) 545, 1193
BstHHI GCGC 1 cut(s) 312
BstKTI GATC 4 cut(s) 707, 1063, 1106, 1341
BstMAI GTCTC 2 cut(s) 321, 583
BstMBI GATC 4 cut(s) 704, 1060, 1103, 1338
BstMWI GCNNNNNNNGC 4 cut(s) 307, 413, 776, 937
BstNI CCWGG 1 cut(s) 354
BstNSI RCATGY 1 cut(s) 310
BstSCI CCNGG 1 cut(s) 352
BstV1I GCAGC 1 cut(s) 1148
BstV2I GAAGAC 1 cut(s) 173
BstX2I RGATCY 1 cut(s) 704
BstYI RGATCY 1 cut(s) 704
Bsu15I ATCGAT 1 cut(s) 1102
BsuRI GGCC 2 cut(s) 335, 890
BsuTUI ATCGAT 1 cut(s) 1102
BtgZI GCGATG 1 cut(s) 712
BtsCI GGATG 2 cut(s) 545, 1193
BtsIMutI CAGTG 1 cut(s) 856
Cac8I GCNNGC 3 cut(s) 308, 314, 418
CfoI GCGC 1 cut(s) 312
Cfr13I GGNCC 2 cut(s) 350, 377
ClaI ATCGAT 1 cut(s) 1102
Csp6I GTAC 4 cut(s) 833, 1028, 1252, 1360
CspCI CAANNNNNGTGG 2 cut(s) 1114, 1149
CviAII CATG 5 cut(s) 123, 293, 307, 331, 484
CviQI GTAC 4 cut(s) 833, 1028, 1252, 1360
DdeI CTNAG 1 cut(s) 176
DpnI GATC 4 cut(s) 706, 1062, 1105, 1340
DpnII GATC 4 cut(s) 704, 1060, 1103, 1338
DraI TTTAAA 1 cut(s) 675
EaeI YGGCCR 1 cut(s) 333
Eco130I CCWWGG 3 cut(s) 276, 656, 1088
Eco32I GATATC 1 cut(s) 140
Eco47I GGWCC 2 cut(s) 350, 377
Eco88I CYCGRG 1 cut(s) 862
EcoRII CCWGG 1 cut(s) 352
EcoRV GATATC 1 cut(s) 140
EcoT14I CCWWGG 3 cut(s) 276, 656, 1088
EcoT22I ATGCAT 1 cut(s) 1193
ErhI CCWWGG 3 cut(s) 276, 656, 1088
FaeI CATG 5 cut(s) 126, 296, 310, 334, 487
FalI AAGNNNNNCTT 2 cut(s) 1241, 1273
FaqI GGGAC 1 cut(s) 363
FatI CATG 5 cut(s) 122, 292, 306, 330, 483
FbaI TGATCA 1 cut(s) 1060
Fnu4HI GCNGC 1 cut(s) 1137
FokI GGATG 2 cut(s) 532, 1200
Fsp4HI GCNGC 1 cut(s) 1137
FspBI CTAG 3 cut(s) 465, 657, 1304
GlaI GCGC 1 cut(s) 311
GluI GCNGC 1 cut(s) 1137
GsaI CCCAGC 1 cut(s) 219
GsuI CTGGAG 2 cut(s) 111, 768
HaeIII GGCC 2 cut(s) 335, 890
HhaI GCGC 1 cut(s) 312
Hin1II CATG 5 cut(s) 126, 296, 310, 334, 487
Hin6I GCGC 1 cut(s) 310
HinP1I GCGC 1 cut(s) 310
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HinfI GANTC 4 cut(s) 5, 321, 691, 1349
HphI GGTGA 3 cut(s) 134, 223, 964
Hpy166II GTNNAC 3 cut(s) 67, 686, 1006
Hpy188I TCNGA 4 cut(s) 326, 638, 1173, 1334
Hpy188III TCNNGA 6 cut(s) 114, 471, 520, 758, 1199, 1346
Hpy8I GTNNAC 3 cut(s) 67, 686, 1006
HpyAV CCTTC 6 cut(s) 182, 278, 559, 655, 718, 985
HpyCH4III ACNGT 3 cut(s) 1132, 1311, 1364
HpyCH4IV ACGT 3 cut(s) 251, 737, 1358
HpyF10VI GCNNNNNNNGC 4 cut(s) 307, 413, 776, 937
HpyF3I CTNAG 1 cut(s) 176
HpySE526I ACGT 3 cut(s) 251, 737, 1358
Hsp92II CATG 5 cut(s) 126, 296, 310, 334, 487
HspAI GCGC 1 cut(s) 310
Ksp22I TGATCA 1 cut(s) 1060
Kzo9I GATC 4 cut(s) 704, 1060, 1103, 1338
LmnI GCTCC 4 cut(s) 79, 92, 658, 1178
Lsp1109I GCAGC 1 cut(s) 1148
LweI GCATC 4 cut(s) 76, 513, 615, 1178
MaeI CTAG 3 cut(s) 465, 657, 1304
MaeII ACGT 3 cut(s) 251, 737, 1358
MaeIII GTNAC 1 cut(s) 247
MalI GATC 4 cut(s) 706, 1062, 1105, 1340
MboI GATC 4 cut(s) 704, 1060, 1103, 1338
MboII GAAGA 7 cut(s) 5, 65, 71, 173, 375, 416, 1317
MfeI CAATTG 1 cut(s) 156
MflI RGATCY 1 cut(s) 704
MhlI GDGCHC 1 cut(s) 108
MlsI TGGCCA 1 cut(s) 335
MluCI AATT 9 cut(s) 156, 381, 386, 497, 540, 640, 900, 910, 1064
MluNI TGGCCA 1 cut(s) 335
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 1357
MnlI CCTC 8 cut(s) 110, 239, 425, 555, 792, 942, 1206, 1255
Mox20I TGGCCA 1 cut(s) 335
Mph1103I ATGCAT 1 cut(s) 1193
MroXI GAANNNNTTC 1 cut(s) 800
MscI TGGCCA 1 cut(s) 335
MseI TTAA 3 cut(s) 444, 674, 789
MslI CAYNNNNRTG 1 cut(s) 1186
Msp20I TGGCCA 1 cut(s) 335
MspA1I CMGCKG 2 cut(s) 620, 992
MspCI CTTAAG 1 cut(s) 443
MspR9I CCNGG 1 cut(s) 354
MunI CAATTG 1 cut(s) 156
Mva1269I GAATGC 3 cut(s) 420, 1054, 1191
MvaI CCWGG 1 cut(s) 354
MwoI GCNNNNNNNGC 4 cut(s) 307, 413, 776, 937
NdeII GATC 4 cut(s) 704, 1060, 1103, 1338
NlaIII CATG 5 cut(s) 126, 296, 310, 334, 487
NlaIV GGNNCC 3 cut(s) 351, 625, 706
NsiI ATGCAT 1 cut(s) 1193
NspI RCATGY 1 cut(s) 310
PaeI GCATGC 1 cut(s) 310
PctI GAATGC 3 cut(s) 420, 1054, 1191
PdmI GAANNNNTTC 1 cut(s) 800
PfeI GAWTC 3 cut(s) 321, 691, 1349
PflMI CCANNNNNTGG 1 cut(s) 1154
PkrI GCNGC 1 cut(s) 1138
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Ppu21I YACGTR 2 cut(s) 738, 1359
Psp1406I AACGTT 1 cut(s) 251
Psp6I CCWGG 1 cut(s) 352
PspFI CCCAGC 1 cut(s) 215
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 3 cut(s) 351, 625, 706
PspPI GGNCC 2 cut(s) 350, 377
PsuI RGATCY 1 cut(s) 704
PvuII CAGCTG 2 cut(s) 620, 992
RsaI GTAC 4 cut(s) 834, 1029, 1253, 1361
RsaNI GTAC 4 cut(s) 833, 1028, 1252, 1360
RseI CAYNNNNRTG 1 cut(s) 1186
SaqAI TTAA 3 cut(s) 444, 674, 789
SatI GCNGC 1 cut(s) 1137
Sau3AI GATC 4 cut(s) 704, 1060, 1103, 1338
Sau96I GGNCC 2 cut(s) 350, 377
ScaI AGTACT 1 cut(s) 1029
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 354
SduI GDGCHC 1 cut(s) 108
SfaNI GCATC 4 cut(s) 76, 513, 615, 1178
SinI GGWCC 2 cut(s) 350, 377
SmiMI CAYNNNNRTG 1 cut(s) 1186
SmlI CTYRAG 2 cut(s) 443, 559
SmoI CTYRAG 2 cut(s) 443, 559
SphI GCATGC 1 cut(s) 310
Sse9I AATT 9 cut(s) 156, 381, 386, 497, 540, 640, 900, 910, 1064
SspMI CTAG 3 cut(s) 465, 657, 1304
StyD4I CCNGG 1 cut(s) 352
StyI CCWWGG 3 cut(s) 276, 656, 1088
TaaI ACNGT 3 cut(s) 1132, 1311, 1364
TaiI ACGT 3 cut(s) 254, 740, 1361
TaqI TCGA 4 cut(s) 319, 644, 839, 1102
TasI AATT 9 cut(s) 156, 381, 386, 497, 540, 640, 900, 910, 1064
TatI WGTACW 3 cut(s) 832, 1027, 1251
TfiI GAWTC 3 cut(s) 321, 691, 1349
Tru1I TTAA 3 cut(s) 444, 674, 789
Tru9I TTAA 3 cut(s) 444, 674, 789
TscAI CASTG 1 cut(s) 856
TseI GCWGC 1 cut(s) 1136
TspDTI ATGAA 3 cut(s) 72, 1038, 1195
TspGWI ACGGA 1 cut(s) 616
TspRI CASTG 1 cut(s) 856
Van91I CCANNNNNTGG 1 cut(s) 1154
Vha464I CTTAAG 1 cut(s) 443
VpaK11BI GGWCC 2 cut(s) 350, 377
XapI RAATTY 2 cut(s) 540, 640
XceI RCATGY 1 cut(s) 310
XcmI CCANNNNNNNNNTGG 2 cut(s) 299, 343
XmaJI CCTAGG 1 cut(s) 656
XmnI GAANNNNTTC 1 cut(s) 800
XspI CTAG 3 cut(s) 465, 657, 1304
ZrmI AGTACT 1 cut(s) 1029
Zsp2I ATGCAT 1 cut(s) 1193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.