Rh1BG104900

GABA transporter 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000597
Physical Location & Seq
Forward (+)
18260019 .. 18264124
4106 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG104900.1

Sequence Viewer

Length: 663 bp
ATGGGAACTGTTGCTGCTCCATACATGATGGAATTAGCATCTGAGGGTGATCAGAAGCAAAATGGTGCCGAGGCGCCCGGCGGCCCTCCGAAAGAGCTTGACGCCGGAGCTCTCTTCGTTCTCAAATCGCAAGGGTCGTGGTTACATGTTGGGTACCACTTGACGACATCTATAGTGGCTCCGGTGCTTCTAAGTCTTCCGTTTGCGATGGCCTTGCTCGGCTGGGTTGGGGGAGTCATTTGTGTAGCCTTGGCAGGTTTGGTCACCTTCTACTCCTACAATCTTCTCTCTTTAGTTCTTGAGCACCAAGAAAAGCTTGGGCATCGTCAACTTCGCTTTCGAGACATGGCCAAAGACATTTTAGGTCCTGCATGGGGCAAATATTTTGTCGGTCCTCTGCAATTTTGGATATGCTATGGTGCAGTCATCGCTTGCACATTACTTGGAGGGCAGAGCCTTAAGTTTATTTACTTGCTCTCTAATCCAGATGGAACAATGAAGCTGTACCAGTTTATTATTATGTTCGGATGCGTCACACTCTTTTTGGCTCAAATGCCATCCTTCCACTCCTTAAGGCATATTAACCTCGTTTCTCTAATCCTTTGTCTTGCATATAGCGCCTGCGTCACTGCTGGCTGCATATACATTGGTAATTATCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

220

Amino Acids

23.97

Weight (kDa)

7.62

Isoelectric Point (pI)

37.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 44 - 210 1.2e-29 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08230 AT1G08230 AT1G08230 AT1G08230 AT1G08230
fragaria_vesca FvH4_3g30140 FvH4_7g06340 FvH4_7g06350 FvH4_7g06350
malus_domestica MD02G1244800.v1.1 MD03G1133300.v1.1 MD07G1072100.v1.1 MD07G1072300.v1.1 MD11G1155800.v1.1 MD11G1156000.v1.1
prunus_persica Prupe.2G090300_v2.0.a1 Prupe.2G090500_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1
pyrus_communis pycom02g21070 pycom03g08970 pycom07g05520
rosa_chinensis RchiOBHm_Chr1g0334311 RchiOBHm_Chr1g0334341 RchiOBHm_Chr1g0334351 RchiOBHm_Chr1g0334371 RchiOBHm_Chr1g0334381 RchiOBHm_Chr1g0334431 RchiOBHm_Chr5g0055491 RchiOBHm_Chr5g0055511
rosa_laevigata RLG00000029454 RLG00000029457 RLG00000029458 RLG00000029459 RLG00000029461 RLG00000034991 RLG00000034993
rosa_multiflora Rmu_sc0001673.1_g000036 Rmu_sc0001673.1_g000040 Rmu_sc0016880.1_g000002 Rmu_ssc0000047.1_g000014 Rmu_ssc0000047.1_g000015 Rmu_ssc0000047.1_g000016 Rmu_ssc0000047.1_g000023
rosa_roxburghii Rroxscaffold_1G00024820 Rroxscaffold_1G00024850 Rroxscaffold_1G00024860 Rroxscaffold_4G00316880 Rroxscaffold_4G00316900
rosa_rugosa Rorug01G0113300.1 Rorug01G0113400 Rorug01G0113500 Rorug05G0293200 Rorug05G0293200 Rorug05G0293400.1
rosa_samantha Rh1AG138200 Rh1AG138300 Rh1AG139000 Rh1BG104900 Rh1CG130400 Rh1CG130500 Rh1CG131000 Rh1DG142700 Rh1DG142800 Rh5AG362800 Rh5AG363000 Rh5BG375000 Rh5BG375200 Rh5CG396900 Rh5CG397100 Rh5DG388300 Rh5DG388400
rosa_wichuraiana Rw0G003720 Rw0G003730 Rw0G003740 Rw1G011440 Rw1G011450 Rw5G034150 Rw5G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 245
Acc65I GGTACC 1 cut(s) 153
AccB1I GGYRCC 3 cut(s) 65, 73, 153
AciI CCGC 1 cut(s) 81
AcoI YGGCCR 1 cut(s) 348
AcyI GRCGYC 2 cut(s) 74, 102
AfaI GTAC 2 cut(s) 155, 506
AfiI CCNNNNNNNGG 1 cut(s) 374
AflII CTTAAG 2 cut(s) 458, 571
AflIII ACRYGT 1 cut(s) 145
AluBI AGCT 4 cut(s) 97, 110, 316, 502
AluI AGCT 4 cut(s) 97, 110, 316, 502
Alw21I GWGCWC 2 cut(s) 112, 306
Alw26I GTCTC 1 cut(s) 336
AoxI GGCC 3 cut(s) 82, 210, 348
ApeKI GCWGC 2 cut(s) 14, 636
ArsI GACNNNNNNTTYG 2 cut(s) 372, 404
Asp718I GGTACC 1 cut(s) 153
AspLEI GCGC 2 cut(s) 76, 620
AspS9I GGNCC 3 cut(s) 83, 365, 392
AsuC2I CCSGG 1 cut(s) 78
AsuHPI GGTGA 2 cut(s) 59, 256
AvaII GGWCC 2 cut(s) 365, 392
BalI TGGCCA 1 cut(s) 350
BanI GGYRCC 3 cut(s) 65, 73, 153
BanII GRGCYC 1 cut(s) 112
BbsI GAAGAC 1 cut(s) 188
Bbv12I GWGCWC 2 cut(s) 112, 306
BbvI GCAGC 1 cut(s) 623
BccI CCATC 4 cut(s) 22, 202, 482, 565
BcgI CGANNNNNNTGC 2 cut(s) 196, 230
BclI TGATCA 1 cut(s) 49
BcnI CCSGG 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 336
BfmI CTRYAG 1 cut(s) 171
BfoI RGCGCY 2 cut(s) 77, 621
BfrI CTTAAG 2 cut(s) 458, 571
BfuAI ACCTGC 1 cut(s) 245
BisI GCNGC 3 cut(s) 15, 82, 637
BlsI GCNGC 3 cut(s) 16, 83, 638
Bme1390I CCNGG 1 cut(s) 78
Bme18I GGWCC 2 cut(s) 365, 392
BmgT120I GGNCC 3 cut(s) 83, 365, 392
BmiI GGNNCC 4 cut(s) 67, 75, 155, 180
BmrFI CCNGG 1 cut(s) 78
BmsI GCATC 3 cut(s) 47, 331, 518
BpiI GAAGAC 1 cut(s) 188
BpuEI CTTGAG 1 cut(s) 320
BpuMI CCSGG 1 cut(s) 78
BsaHI GRCGYC 2 cut(s) 74, 102
BsaJI CCNNGG 2 cut(s) 69, 249
BsaWI WCCGGW 1 cut(s) 181
Bsc4I CCNNNNNNNGG 1 cut(s) 374
Bse1I ACTGG 1 cut(s) 508
BseDI CCNNGG 2 cut(s) 69, 249
BseGI GGATG 2 cut(s) 533, 557
BseLI CCNNNNNNNGG 1 cut(s) 374
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 508
BseXI GCAGC 1 cut(s) 623
BseYI CCCAGC 1 cut(s) 222
BsgI GTGCAG 1 cut(s) 441
BshFI GGCC 3 cut(s) 84, 212, 350
BshNI GGYRCC 3 cut(s) 65, 73, 153
BsiHKAI GWGCWC 2 cut(s) 112, 306
BsiSI CCGG 3 cut(s) 78, 105, 182
BslI CCNNNNNNNGG 1 cut(s) 374
BsmAI GTCTC 1 cut(s) 336
BsnI GGCC 3 cut(s) 84, 212, 350
Bsp1286I GDGCHC 2 cut(s) 112, 306
Bsp143I GATC 1 cut(s) 49
BspACI CCGC 1 cut(s) 81
BspANI GGCC 3 cut(s) 84, 212, 350
BspCNI CTCAG 1 cut(s) 34
BspLI GGNNCC 4 cut(s) 67, 75, 155, 180
BspMI ACCTGC 1 cut(s) 245
BspT107I GGYRCC 3 cut(s) 65, 73, 153
BspTI CTTAAG 2 cut(s) 458, 571
BsrI ACTGG 1 cut(s) 508
BssECI CCNNGG 2 cut(s) 69, 249
BssMI GATC 1 cut(s) 49
BssNI GRCGYC 2 cut(s) 74, 102
BssT1I CCWWGG 1 cut(s) 249
Bst4CI ACNGT 1 cut(s) 10
Bst6I CTCTTC 1 cut(s) 119
BstACI GRCGYC 2 cut(s) 74, 102
BstAFI CTTAAG 2 cut(s) 458, 571
BstC8I GCNNGC 3 cut(s) 433, 622, 634
BstDEI CTNAG 2 cut(s) 42, 191
BstEII GGTNACC 1 cut(s) 262
BstF5I GGATG 2 cut(s) 533, 557
BstH2I RGCGCY 2 cut(s) 77, 621
BstHHI GCGC 2 cut(s) 76, 620
BstKTI GATC 1 cut(s) 52
BstMAI GTCTC 1 cut(s) 336
BstMBI GATC 1 cut(s) 49
BstMWI GCNNNNNNNGC 2 cut(s) 428, 617
BstNSI RCATGY 1 cut(s) 149
BstPI GGTNACC 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 76
BstSFI CTRYAG 1 cut(s) 171
BstV1I GCAGC 1 cut(s) 623
BstV2I GAAGAC 1 cut(s) 188
BsuRI GGCC 3 cut(s) 84, 212, 350
BtgZI GCGATG 2 cut(s) 221, 412
BtsCI GGATG 2 cut(s) 533, 557
BtsI GCAGTG 1 cut(s) 627
BtsIMutI CAGTG 1 cut(s) 627
BveI ACCTGC 1 cut(s) 245
Cac8I GCNNGC 3 cut(s) 433, 622, 634
CfoI GCGC 2 cut(s) 76, 620
Cfr13I GGNCC 3 cut(s) 83, 365, 392
CseI GACGC 3 cut(s) 110, 520, 613
Csp6I GTAC 2 cut(s) 154, 505
CspCI CAANNNNNGTGG 2 cut(s) 119, 154
CviAII CATG 4 cut(s) 25, 146, 346, 372
CviQI GTAC 2 cut(s) 154, 505
DdeI CTNAG 2 cut(s) 42, 191
DinI GGCGCC 1 cut(s) 75
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
EaeI YGGCCR 1 cut(s) 348
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Ecl136II GAGCTC 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 249
Eco24I GRGCYC 1 cut(s) 112
Eco47I GGWCC 2 cut(s) 365, 392
Eco53kI GAGCTC 1 cut(s) 110
Eco91I GGTNACC 1 cut(s) 262
EcoICRI GAGCTC 1 cut(s) 110
EcoO109I RGGNCCY 1 cut(s) 365
EcoO65I GGTNACC 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 249
EcoT38I GRGCYC 1 cut(s) 112
EgeI GGCGCC 1 cut(s) 75
EheI GGCGCC 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 249
FaeI CATG 4 cut(s) 28, 149, 349, 375
FalI AAGNNNNNCTT 2 cut(s) 300, 332
FatI CATG 4 cut(s) 24, 145, 345, 371
FbaI TGATCA 1 cut(s) 49
Fnu4HI GCNGC 3 cut(s) 15, 82, 637
FokI GGATG 2 cut(s) 540, 544
FriOI GRGCYC 1 cut(s) 112
Fsp4HI GCNGC 3 cut(s) 15, 82, 637
GlaI GCGC 2 cut(s) 75, 619
GluI GCNGC 3 cut(s) 15, 82, 637
GsaI CCCAGC 1 cut(s) 226
HaeII RGCGCY 2 cut(s) 77, 621
HaeIII GGCC 3 cut(s) 84, 212, 350
HapII CCGG 3 cut(s) 78, 105, 182
HgaI GACGC 3 cut(s) 110, 520, 613
HhaI GCGC 2 cut(s) 76, 620
Hin1I GRCGYC 2 cut(s) 74, 102
Hin1II CATG 4 cut(s) 28, 149, 349, 375
Hin6I GCGC 2 cut(s) 74, 618
HinP1I GCGC 2 cut(s) 74, 618
HincII GTYRAC 1 cut(s) 329
HindII GTYRAC 1 cut(s) 329
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 1 cut(s) 234
HpaII CCGG 3 cut(s) 78, 105, 182
HphI GGTGA 2 cut(s) 59, 256
Hpy166II GTNNAC 1 cut(s) 329
Hpy188I TCNGA 4 cut(s) 43, 54, 90, 527
Hpy188III TCNNGA 3 cut(s) 299, 341, 485
Hpy8I GTNNAC 1 cut(s) 329
HpyAV CCTTC 2 cut(s) 277, 571
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4V TGCA 6 cut(s) 371, 400, 422, 435, 611, 639
HpyF10VI GCNNNNNNNGC 2 cut(s) 428, 617
HpyF3I CTNAG 2 cut(s) 42, 191
Hsp92I GRCGYC 2 cut(s) 74, 102
Hsp92II CATG 4 cut(s) 28, 149, 349, 375
HspAI GCGC 2 cut(s) 74, 618
KasI GGCGCC 1 cut(s) 73
KpnI GGTACC 1 cut(s) 157
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 1 cut(s) 49
LmnI GCTCC 3 cut(s) 22, 107, 184
Lsp1109I GCAGC 1 cut(s) 623
LweI GCATC 3 cut(s) 47, 331, 518
MaeIII GTNAC 4 cut(s) 141, 262, 532, 625
MalI GATC 1 cut(s) 51
MboI GATC 1 cut(s) 49
MboII GAAGA 3 cut(s) 106, 188, 275
MhlI GDGCHC 2 cut(s) 112, 306
MlsI TGGCCA 1 cut(s) 350
MluCI AATT 3 cut(s) 32, 401, 652
MluNI TGGCCA 1 cut(s) 350
Mly113I GGCGCC 1 cut(s) 74
MlyI GAGTC 1 cut(s) 243
MnlI CCTC 6 cut(s) 37, 64, 96, 405, 440, 596
Mox20I TGGCCA 1 cut(s) 350
MscI TGGCCA 1 cut(s) 350
MseI TTAA 3 cut(s) 459, 572, 582
Msp20I TGGCCA 1 cut(s) 350
MspCI CTTAAG 2 cut(s) 458, 571
MspI CCGG 3 cut(s) 78, 105, 182
MspR9I CCNGG 1 cut(s) 78
MwoI GCNNNNNNNGC 2 cut(s) 428, 617
NarI GGCGCC 1 cut(s) 74
NciI CCSGG 1 cut(s) 78
NdeII GATC 1 cut(s) 49
NlaIII CATG 4 cut(s) 28, 149, 349, 375
NlaIV GGNNCC 4 cut(s) 67, 75, 155, 180
NmeAIII GCCGAG 2 cut(s) 94, 198
NmuCI GTSAC 3 cut(s) 262, 532, 625
NspI RCATGY 1 cut(s) 149
PciI ACATGT 1 cut(s) 145
PcsI WCGNNNNNNNCGW 1 cut(s) 134
PkrI GCNGC 3 cut(s) 16, 83, 638
PleI GAGTC 1 cut(s) 242
PluTI GGCGCC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 242
PpuMI RGGWCCY 1 cut(s) 365
PscI ACATGT 1 cut(s) 145
Psp124BI GAGCTC 1 cut(s) 112
Psp5II RGGWCCY 1 cut(s) 365
PspEI GGTNACC 1 cut(s) 262
PspFI CCCAGC 1 cut(s) 222
PspN4I GGNNCC 4 cut(s) 67, 75, 155, 180
PspPI GGNCC 3 cut(s) 83, 365, 392
PspPPI RGGWCCY 1 cut(s) 365
RsaI GTAC 2 cut(s) 155, 506
RsaNI GTAC 2 cut(s) 154, 505
SacI GAGCTC 1 cut(s) 112
SaqAI TTAA 3 cut(s) 459, 572, 582
SatI GCNGC 3 cut(s) 15, 82, 637
Sau3AI GATC 1 cut(s) 49
Sau96I GGNCC 3 cut(s) 83, 365, 392
SchI GAGTC 1 cut(s) 243
ScrFI CCNGG 1 cut(s) 78
SduI GDGCHC 2 cut(s) 112, 306
SetI ASST 8 cut(s) 99, 112, 259, 269, 318, 367, 504, 588
SfaNI GCATC 3 cut(s) 47, 331, 518
SfcI CTRYAG 1 cut(s) 171
SfoI GGCGCC 1 cut(s) 75
SinI GGWCC 2 cut(s) 365, 392
SmlI CTYRAG 3 cut(s) 299, 458, 571
SmoI CTYRAG 3 cut(s) 299, 458, 571
Sse9I AATT 3 cut(s) 32, 401, 652
SsiI CCGC 1 cut(s) 81
SspDI GGCGCC 1 cut(s) 73
SspI AATATT 1 cut(s) 383
SstI GAGCTC 1 cut(s) 112
StyD4I CCNGG 1 cut(s) 76
StyI CCWWGG 1 cut(s) 249
TaaI ACNGT 1 cut(s) 10
TaqI TCGA 1 cut(s) 340
TaqII GACCGA 1 cut(s) 380
TasI AATT 3 cut(s) 32, 401, 652
TauI GCSGC 1 cut(s) 84
Tru1I TTAA 3 cut(s) 459, 572, 582
Tru9I TTAA 3 cut(s) 459, 572, 582
TscAI CASTG 1 cut(s) 634
TseFI GTSAC 3 cut(s) 262, 532, 625
TseI GCWGC 2 cut(s) 14, 636
Tsp45I GTSAC 3 cut(s) 262, 532, 625
TspDTI ATGAA 1 cut(s) 512
TspGWI ACGGA 1 cut(s) 189
TspRI CASTG 1 cut(s) 634
Vha464I CTTAAG 2 cut(s) 458, 571
VpaK11BI GGWCC 2 cut(s) 365, 392
XceI RCATGY 1 cut(s) 149
XcmI CCANNNNNNNNNTGG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.